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[+] Show/hide bicluster #160 rows and columns.
bicluster 160
Mycobacterium tuberculosis H37Rv
17x234
[+] Show/hide bicluster #160 rows (genes).
bicluster 160 genes
Mycobacterium tuberculosis H37Rv
17
[+] Show/hide bicluster #160 rows (short gene names).
bicluster 160 short names
Mycobacterium tuberculosis H37Rv
17
short_name
[+] Show/hide bicluster #160 rows (long gene names).
bicluster 160 long names
Mycobacterium tuberculosis H37Rv
17
long_name
[+] Show/hide bicluster #160 rows (NCBI RefSeq gene IDs).
bicluster 160 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
30
[+] Show/hide bicluster #160 gene upstream sequences.
bicluster 160 upstream sequences
Mycobacterium tuberculosis H37Rv
16
upstream
[+] Show/hide bicluster #160 columns (arrays; conditions).
bicluster 160 arrays
Mycobacterium tuberculosis H37Rv
234
[+] Show/hide bicluster #160 ratios.
bicluster 160 ratios
Mycobacterium tuberculosis H37Rv
17x234
GENES 2867:::H37Ra..7H9.shake.replicate.3 2867:::H37Ra..Sauton.s.media.replicate.3 2885:::Strain.M3061a..replicate.3 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.2 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.3 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.4 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.4 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.2 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.4 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.6 4082:::H37Rv.wild.type.Vs.Rv3676.null.2 4082:::H37Rv.wild.type.Vs.Rv3676.null.3 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.7 4082:::Rv3676.null.Vs.H37Rv.wild.type.2 4082:::Rv3676.null.Vs.H37Rv.wild.type.3 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.7 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2b 4084:::High.iron.wt.vs.low.iron.wt.1a 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1 4101:::NRP.Day14..3 4107:::DIPED..50ug.mL..DMSO..12h 4107:::DIPED.10ug.mL.vs.DMSO.12h.2 4107:::pH5.2vspH6.8..5h. 4107:::pH5.6vspH6.8..16h. 4107:::pH5.6vspH6.8..5h. 4107:::Rif.5ug.mL.vsDMSO.2.5h 4107:::UV.40J.vs.ctrl.12h.1 4107:::UV.60J.vs.ctrl.6h.1 4107:::WT.t.0h.WT.t.6h..1 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051. 4107:::X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046. 4107:::X0.02mM.GSNOvsDMSO..6h 4107:::X0.12mg.mL.BZA.pH5.6..4h..2 4107:::X0.12mg.mL.BZAvspH5.6..5h. 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.1ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X0.32ug.mL.CervsEtOH..6h 4107:::X0.4ug.mL.PA824.DMSO..6h..1 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X1.2mg.mL.NamvspH5.6..5h. 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..10.5h. 4107:::X1.2mg.mL.PZAvspH5.6..4h.A 4107:::X100ug.mL.Cphx.DMSO..6h 4107:::X100ug.mL.TriclosanvsEtOH..6h 4107:::X100ug.mL.TriclosanvsEtOH..6hA 4107:::X100ug.mLCephalexinvsEtOH.6h 4107:::X10ug.mL..109vsDMSO..6hA 4107:::X10ug.mL..241vsDMSO..6h 4107:::X10ug.mL..59vsDMSO..6h 4107:::X10ug.mL.ChlorprovsEtOH 4107:::X10ug.mL.PA.1vsDMSO..6hA 4107:::X150uM.Deferroxaminevsctrl..6hA 4107:::X150uM.Deferroxaminevsctrl..6hB 4107:::X20mJ.UVvsctrl..6h. 4107:::X20ug.mL.chlorprmz.DMSO..6h..1 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X25J.UVvs.ctrl..6h. 4107:::X2ug.mL..111895vsDMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X40ug.mL.5CL.pH5.6..4h..2 4107:::X4mM.H2O2.ctrl..2h...1 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X4ug.mLNaturalcompoundvsDMSO.6h 4107:::X50ug.mL.TriclosanvsEtOH..6hA 4107:::X5ug.mL.CapvsEtOH..6h 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X5ug.mLStreptomycinvsEtOH.6h 4107:::X5ug.mLStreptomycinvsEtOH.6hA 4107:::X60J.UVvsctrl..6h. 4363:::H37Rv.hypoxia.4hr.rep.5 4363:::H37Rv.hypoxia.7.day.rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.1 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5 4570:::MTB.strain.TB294.SigA.overexpression.vs.Ctrl..DS..rep2 4575:::Extracted.Lung.Surfactant.30min.rep.2 4575:::Purified.Human.SP.A.Coated.2hrs.rep2 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep4 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4581:::H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs 4581:::H37Rv.Ctrl.vs.5.ug.ml.garlic.extract.6hrs 4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2 4583:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection..DS..rep.3 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.2 4615:::AA_10uM_10min_01 4615:::AA_30uM_1h_02 4615:::AA_30uM_24.AA_30uM_1h_01 4615:::AA_30uM_24h_04 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_30min_07 4615:::AA_30uM_4h_02 4615:::CHP.AA.30m.1 4615:::CK_OA_NA_0.05_2h 4615:::CK.for.AA.Na.4h.2 4615:::CK.LA.2h.4 4615:::Glycerol_1. 4615:::L2A_30uM_1h_02 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_2h_02 4615:::L2A_30uM_4h_04 4615:::L2A_30uM_4h_08 4615:::MDA_1254.pMV261_02 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261_04 4615:::MT1254.whiB4_CK_01 4615:::MTB1254_Bottom_14D_02 4615:::MTB1254_Bottom_42D_02 4615:::MTB1254_FA5_10min_04 4615:::MTB1254_Pellicle_14D_04 4615:::MTB1254.0485.1._LA_10m_01 4615:::MTB1254.0485.1._OA_30m_02 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_02 4615:::MTB1254vsMTB1254.0485.1. 4615:::MTB1370_PA50_1h_02 4615:::MTB6548_PA50_1h_01 4615:::OA_50uM_24h_03 4615:::OA_50uM_2h..1.5.BSA.10mMGlu._30.min_01 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::PA_100uM_2h_T0_02 4615:::PA_50uM_10min_04 4615:::PA_50uM_10min_07 4615:::PA_50uM_24h_06 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_04 4615:::PA_50uM_2h_08 4615:::PA_50uM_30.min_04 4615:::PA_50uM.AA_30uM_2h_04 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_30min_03 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_30uM_30min_01 4615:::PA_50uM.OA_30uM_30min_04 4615:::Rv_OA_10min 4615:::Rv_Rv3524.1 4615:::Rv.MT96_100503_01 4615:::Starvation_1254_24h_08 4615:::Starvation_1254_6h_04 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_OA50_3d_03 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_PA50_24h_04 4615:::TBD1111 4615:::TBD1114 4615:::TBD625 4615:::TBD662 4615:::TBE055 4615:::TBE056 4615:::TBE059 4615:::Test.5 4615:::Test.6 4615:::Test.G.OA 4615:::Tet_20uM_30M_01 4615:::X7H9Cy3.MDGCy5.03 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4731:::X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A 4731:::X5ug.ml.Rifampicin.vs.DMSO.2.5hrs 4731:::X5ug.ml.Streptomycin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.3 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.3 4815:::H37Rv.reaeration.for.12hrs.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.8 4815:::H37Rv.reaeration.for.4hrs.rep.3 4815:::H37Rv.reaeration.for.4hrs.rep.8 4815:::H37Rv.reaeration.for.6hrs.rep.3 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1 Raghavan_Nature2008:::Complemented.espR.mutant..R...rep3 Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages.for.24hrs
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RV3097C NA NA NA -1.35 0.05 0.436435197308385 -0.515787051364455 0.0793518540560701 1.11092595678498 NA NA NA NA NA NA NA NA -0.58745969373768 -0.761521825215511 0.957341723128071 NA 0.58745969373768 0.761521825215511 -0.957341723128071 0.8 -0.15 -0.539592607581276 -0.505868069607446 0.876837987319574 -0.809388911371914 1.14663429111021 NA -0.269796303790638 -0.202347227842979 0.438418993659787 -1.71995143666532 0.101173613921489 -0.809388911371914 NA -1.01173613921489 0.472143531633617 -0.320383110751383 -1.706874575002 -0.330362820968128 1.22509546109014 0.082590705242032 0.0412953526210159 0.247772115726096 -0.247772115726096 0.247772115726096 3.22103750443925 0.0137651175403387 -0.550604701613547 -0.853437287500998 -1.15626987338845 -0.591900054234563 -1.65181410484064 -0.11012094032271 -1.14250475584811 2.75302350806774 2.69796303790638 1.17003499092879 -0.825907052420321 -1.25262569617082 0.20647676310508 -1.04614893306574 0.991088462904385 -1.2801559312515 -0.633195406855579 0.275302350806774 0.371658173589144 -0.812141934879982 0.757081464718627 0.798376817339643 NA 0.660725641936256 -0.757081464718627 -1.66557922238098 -0.702020994557273 -0.0275302350806774 0.261537233266435 0.674490759476595 1.25262569617082 -1.95464669072809 0.52307446653287 0.509309348992531 -0.825907052420321 -0.536839584073208 -1.30768616633217 1.00485358044472 0 0.481779113911854 0.0412953526210159 -1.41780710665488 -1.08744428568676 -1.69310945746166 NA NA 0.361334335433891 NA NA NA NA NA -0.159747811454983 NA 0.391204640496425 2.98124915688655 0.364225010117361 -1.20059355186834 0.661000944287063 -0.456913095129307 3.02432953442731 -0.63960330640022 0.0348874530763756 0.0116291510254585 NA NA NA 0.196726471514007 -0.983632357570035 -0.44966050631773 0.618283196186879 0.618283196186879 -0.983632357570035 1.32087773730833 -0.590179414542021 -1.37708530059805 NA 0.477764287962588 -0.75880210441117 -1.23656639237376 0.44966050631773 0.590179414542021 0.0562075632897163 -0.477764287962588 -0.393452943028014 -0.393452943028014 -0.112415126579433 -0.75880210441117 0.843113449345744 6.09852061693421 1.71433068033635 -0.281037816448581 -1.03983992085975 -1.7424344619812 -0.196726471514007 -1.32087773730833 0.196726471514007 -1.18035882908404 0.955528575925177 0.421556724672872 0.674490759476595 0.0843113449345744 1.18035882908404 0.871217230990602 -0.75880210441117 -0.112415126579433 6.60438868654166 -0.140518908224291 0.843113449345744 4.21556724672872 -0.702594541121453 -0.505868069607446 -0.0843113449345744 -1.5457079904672 -0.477764287962588 -0.955528575925177 -1.34898151895319 -0.646386977831737 -0.337245379738298 0.477764287962588 1.29277395566347 1.48950042717748 2.27640631323351 1.91105715185035 1.01173613921489 1.65812311704663 -0.365349161383156 -0.365349161383156 0.421556724672872 0.309141598093439 0.0562075632897163 0.224830253158865 0 0.590179414542021 -0.421556724672872 0.786905886056028 -0.730698322766312 1.48950042717748 -0.388063176685164 0.192711645564742 -0.712721004953002 NA NA NA NA 0 0.0259419522875614 -0.077825856862684 -0.233477570588052 2.07535618300491 -1.45274932810344 0.207535618300491 -0.337245379738298 -0.173180059865612 0.519540179596837 0.902359259299769 -0.592458099540252 0.410163299681713 -0.902359259299769 1.03658579877456 1.00818618784923 -0.709990273133258 0.75 -0.2 0.763574444690485 -1.043551741077 -0.114536166703573 0.139988648193256 0.08908368521389 0 0.0204391139235332 0.0118331712188876 -1.3371483477343 0.326366496520933 -0.674490759476595 -1.03349390564962 -0.0326366496520932 -1.12052497138854 0.250214313999382 -1.00882421446853 -1.04335289356536 0.809388911371914
[+] Show/hide bicluster #160 motif PSSM #1. bicluster 160 motif PSSM #1 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0.454545 0 0 0.545455
2 0.818182 0 0.181818 0
3 0 0.181818 0 0.818182
4 0 1 0 0
5 0 0 1 0
6 0.909091 0 0.090909 0
7 0 0.818182 0.181818 0
8 0.454545 0.545455 0 0
9 0.818182 0 0.181818 0
10 0.380379 0.483257 0.028712 0.107652
11 0.198561 0.028712 0.028712 0.744016 [+] Show/hide bicluster #160 motif PSSM #2. bicluster 160 motif PSSM #2 Mycobacterium tuberculosis H37Rv 13x4
POSITION A C G T
1 0 0 0 1
2 0 0 0 1
3 0 1 0 0
4 1 0 0 0
5 0 0 0 1
6 0 0 0 1
7 0 0 1 0
8 0 0 1 0
9 0 1 0 0
10 0 0 0 1
11 0 1 0 0
12 1 0 0 0
13 1 0 0 0 |