GENES 4055:::H37Rv.Vs.M.bovis.rep1 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB1254.Day.0.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4082:::H37Rv.wild.type.Vs.Rv3676.null.7 4082:::Rv3676.null.Vs.H37Rv.wild.type.7 4084:::High.iron.wt.vs.high.iron.ideR.KO.1b 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.4 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.vs..MTB1254.rep1 4089:::MTB1254.vs..MTB1254.rep2 4089:::MTB1254.vs..MTB1254.rep3 4089:::MTB1254.vs..MTB1254.rep4 4089:::MTB1254.vs..MTB1254.rep5 4089:::MTB1254.vs..MTB1254.rep6 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.3 4099:::H37Rv.hypoxia.2hr.rep.3 4099:::H37Rv.hypoxia.2hr.rep.4 4101:::H37Rv.Day.0.rep.2 4101:::H37Rv.Day.0.rep.3 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5 4101:::H37Rv.Day24.1 4101:::H37Rv.Day6.1 4101:::H37Rv.Day6.2 4101:::H37Rv.Day60.1 4101:::NRP.Day10..1 4101:::NRP.Day14..6 4101:::NRP.Day20..2 4101:::NRP.Day6..1 4101:::NRP.Day8..1 4101:::NRP.Day8..3 4107:::X0.12mg.mL.PZAvspH5.6..4h.A 4107:::X0.2mM.NaN3.DMSO 4107:::X10ug.mL.EconazolevsEtOH..6hA 4107:::X1ug.mL..111895vsDMSO..6h 4107:::X4ug.mLNaturalcompoundvsDMSO.6h 4363:::H37Rv.hypoxia.12hr.rep.2 4363:::H37Rv.hypoxia.4.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.4hr.rep.5 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.2 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5 4575:::Whole.Lung.Surfactant.2hrs.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs..DS..rep.3 4615:::AA_10uM_10.min_01 4615:::AA_10uM_10min_01 4615:::AA_30uM_1h_01 4615:::AA_30uM_24h_03 4615:::AA_30uM_30min_03 4615:::AA_30uM_30min_06 4615:::AA_30uM_4h_03 4615:::AA_30uM_4h_07 4615:::AA_30uM_4h_09 4615:::AA_60uM_24h_01 4615:::AA_60uM_24h_02 4615:::Acetate.3mM.10m.02 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.2.2h.for.OA.NA.and.PA.NA 4615:::CK.AA.2h 4615:::CK.MDG.AA.Na.2h 4615:::CK.OA.Na.24h.1 4615:::ETYA_30uM_10min.01 4615:::ETYA_30uM_10min.03 4615:::ETYA_30uM_10min.05 4615:::ETYA_30uM_10min.06 4615:::Glucose_5mM_10min_01 4615:::L2A_30uM_1h_08 4615:::L2A_30uM_2h_03 4615:::L2A_30uM_30min_02 4615:::L2A_30uM_30Min_06 4615:::L2A_30uM_4h_03 4615:::LAA_50uM_30min_01 4615:::MTB1254_FA5_10min_01 4615:::MTB1254_FA5_10min_02 4615:::MTB1254_Pellicle_56D_02 4615:::MTB1254.0485.1._OA_30m_01 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_03 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.B4.1.Compl._OA_30MIN_04 4615:::MTB1254vsMTB1254.0485.1. 4615:::OA_100uM_2h_T0_01 4615:::OA_50uM_1h_01 4615:::OA_50uM_1h_05 4615:::OA_50uM_1h_08 4615:::OA_50uM_1h_10 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h_08 4615:::OA_50uM_30min_08 4615:::PA_50uM_1h_01 4615:::PA_50uM_1h_04 4615:::PA_50uM_1h_11 4615:::PA_50uM_24h_06 4615:::PA_50uM_24h_08 4615:::PA_50uM_30.min_07 4615:::PA_50uM_30min_03 4615:::PA_50uM_30min_10 4615:::PA_50uM_3d_06 4615:::PA_50uM_8h_02 4615:::PA_50uM_8h_03 4615:::PA_50uM.OA_10uM_24h_02 4615:::Rv_Rv3524.1_OA_10min 4615:::Rv_TA_OA30_30mim_01 4615:::Rv.MT106_100503_02 4615:::Rv.MT106_100603_01 4615:::Rv.MT71_100503_01 4615:::Rv.MT71_100703_01 4615:::Rv.MT90_100503_01 4615:::Rv.MT90_100703_01 4615:::Rv.MT90_100903_01 4615:::Rv.MT96_100603_01 4615:::Rv.pMV0481.2. 4615:::TBD044 4615:::TBD663 4615:::TBE057 4615:::TBF466 4615:::Test.1 4615:::Tet_50ng_30M_01 4615:::WM_1254.whiB4._14d_01 4615:::WT_65.4_SDS_02 4615:::WT_85.1_PA_10min_01 4615:::X7H9_MTB1254_OA100_10M_01 4615:::X7H9_MTB1254_OA50_10M_01 4615:::X7H9_MTB1254.3524.1._OA100_10M_01 4615:::X7H9_MTB1254.3524.1._OA50_10M_01 4615:::X7H9Cy3.MDGCy5.03 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1 Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.24.hr.after.macrophage.infection RV0598C -0.742425080574957 0.198379635140175 0.47611112433642 -2.42023154871014 -0.595138905420525 -0.15870370811214 1.82509264328961 -2.261527840598 -2.22185191356996 -2.93601860007459 -3.88824084874743 2.93256851946346 -2.93256851946346 -0.0999999999999998 0.343161965347741 -0.0591658560944382 -1.76314251161426 -2.82812792131414 -2.54413181206084 -2.33113473012086 -5.66808901384718 -5.21842850752945 -0.343161965347742 0.769156129227696 0.508826362412168 1.053152238481 1.97613959355424 1.3371483477343 1.50281274479873 -5.85741975334938 -5.57342364409608 -6.37807928698044 -3.2541220851941 -2.49679912718529 -4.12977675539179 -3.46711916713408 -2.94645963350302 0.319495622909966 1.57381177211206 1.59747811454983 NA 0.319495622909966 -0.366828307785517 0.24849659559664 0.177497568283315 -0.0828321985322135 0.579825389725494 0.579825389725494 -0.0118331712188876 0.0354995136566629 0.366828307785517 1.00581955360545 1.00581955360545 0.934820526292123 0.224830253158865 1.28981566285875 0.532492704849944 0.0118331712188876 -0.272162938034416 1.00581955360545 0.390494650223292 0.65082441703882 0.887487841416573 0.840155156541022 -0.343161965347742 -1.07681858091877 -1.66847714186316 -1.28981566285875 -1.69214348430093 0.769156129227696 0.934820526292123 1.28981566285875 -0.863821498978797 -1.73947616917648 -1.59747811454983 -2.28380204524531 -1.83414153892758 -2.89912694862747 -2.28380204524531 -1.4318137174854 -1.2424829779832 -1.38448103260985 -2.8754606061897 -2.11813764818089 -2.18913667549421 -0.153831225845539 -0.390494650223292 -0.958486868729899 -0.816488814103247 -1.07681858091877 -1.00581955360545 0.153831225845539 -1.69214348430093 -0.343161965347742 0.24849659559664 0.579825389725494 0.414160992661067 0.769156129227696 0.177497568283315 0.437827335098843 2.92279329106525 -0.0354995136566629 -0.437827335098843 0.674490759476595 0.674490759476595 0.840155156541022 -0.112415126579432 2.41067993664783 2.59803848094689 -0.337245379738298 -0.387207658218045 1.20755603712745 0.663611876259231 1.19667715391009 1.06613055530172 1.02261502243226 -1.10964608817117 0.630975226607138 0.761521825215511 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POSITION A C G T 1 0.8 0 0.2 0 2 0 0.8 0.2 0 3 0 0.6 0.2 0.2 4 1 0 0 0 5 0.2 0.4 0 0.4 6 0 0 0.2 0.8 7 0 0 0 1 8 0 0 0 1 9 0 0 0.8 0.2 10 0.6 0.2 0 0.2 11 0.2 0 0 0.8 12 0.6 0 0.4 0 13 0 0 1 0 14 0 0.4 0 0.6 15 0 0.2 0.8 0 16 0.4 0 0 0.6 17 0 1 0 0 18 0 0 0.8 0.2 19 0 0.2 0.8 0 20 0.2 0 0 0.8 21 0 0 1 0

POSITION A C G T 1 0.75 0 0.25 0 2 0 1 0 0 3 0.5 0 0 0.5 4 0 1 0 0 5 0 1 0 0 6 0 0 0.5 0.5 7 0 0 1 0 8 1 0 0 0 9 0 0.25 0.75 0 10 0 0 0.25 0.75 11 0 0 0.25 0.75 12 0 0 1 0 13 0 0 1 0 14 0.75 0 0 0.25 15 0.25 0 0 0.75 16 0.25 0 0.75 0 17 0.5 0.5 0 0 18 0 1 0 0 19 1 0 0 0 20 0.5 0 0 0.5 21 0 0 0 1