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[+] Show/hide bicluster #171 rows and columns.
bicluster 171
Mycobacterium tuberculosis H37Rv
13x235
[+] Show/hide bicluster #171 rows (genes).
bicluster 171 genes
Mycobacterium tuberculosis H37Rv
13
[+] Show/hide bicluster #171 rows (short gene names).
bicluster 171 short names
Mycobacterium tuberculosis H37Rv
13
short_name
[+] Show/hide bicluster #171 rows (long gene names).
bicluster 171 long names
Mycobacterium tuberculosis H37Rv
13
long_name
[+] Show/hide bicluster #171 rows (NCBI RefSeq gene IDs).
bicluster 171 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
24
[+] Show/hide bicluster #171 gene upstream sequences.
bicluster 171 upstream sequences
Mycobacterium tuberculosis H37Rv
13
upstream
[+] Show/hide bicluster #171 columns (arrays; conditions).
bicluster 171 arrays
Mycobacterium tuberculosis H37Rv
235
[+] Show/hide bicluster #171 ratios.
bicluster 171 ratios
Mycobacterium tuberculosis H37Rv
13x235
GENES 2867:::H37Rv..Youman.media.replicate.1 2867:::H37Rv..Youman.media.replicate.2 2885:::Strain.1254...replicate.1 2885:::Strain.1254...replicate.4 2885:::Strain.1843...replicate.2 2885:::Strain.3160..replicate.1 2885:::Strain.9800608...replicate.3 2885:::Strain.9800608..replicate.1 2885:::Strain.9800608..replicate.2 2885:::Strain.9802826..replicate.2 2885:::Strain.9802826..replicate.4 2885:::Strain.CDC1551..replicate.1 2885:::Strain.CDC1551..replicate.3 2885:::Strain.M3061a..replicate.4 4055:::H37Rv.Vs.M.bovis.rep2 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.2 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.2 4082:::H37Rv.wild.type.Vs.Rv3676.null.5 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.2 4082:::Rv3676.null.Vs.H37Rv.wild.type.5 4084:::High.iron.wt.vs.high.iron.ideR.KO.1a 4084:::High.iron.wt.vs.high.iron.ideR.KO.1b 4084:::High.iron.wt.vs.high.iron.ideR.KO.3b 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4 4101:::H37Rv.Day14.1 4101:::H37Rv.Day24.2 4101:::H37Rv.Day60.3 4101:::NRP.Day12..1 4101:::NRP.Day14..3 4101:::NRP.Day6..1 4107:::DIPED..100ug.mL..DMSO..12h..1 4107:::DIPED.10ug.mL.vs.DMSO.12h.1 4107:::DIPED.10ug.mL.vs.DMSO.12h.2 4107:::DIPED.50ug.mL.vs.DMSO.12h.1 4107:::DIPED.50ug.mL.vs.DMSO.12h.2 4107:::DIPED.5ug.mL.vs.DMSO.12h.1 4107:::DIPED.5ug.mL.vs.DMSO.12h.2 4107:::EMB.10ug.mL.vs.DMSO.12h.4 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.12mg.mL.PZA.pH5.6..4h..2 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.12mg.mL.PZAvspH5.6..11h. 4107:::X0.1mM.GSNO.DMSO..6h 4107:::X0.1mM.GSNOvsDMSO..6h.A 4107:::X0.1ug.mL.Mtmvsctrl..0.75h. 4107:::X0.1ug.mL.Mtmvsctrl..1.5h. 4107:::X0.1ug.mL.RifpvsEtOH..6h 4107:::X0.1ug.mL.RifpvsEtOH..6hA 4107:::X0.2mg.mL.AmpvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2mM.NaN3.DMSO 4107:::X0.2ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2ug.mL.Mtmvsctrl..4h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.B 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.5ug.mL..121940vsDMSO.6h 4107:::X0.5ug.mL..124196vsDMSO..6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hB 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X0.5ug.mL.CervsEtOH..6hA 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X1.2mg.mL.PZAvspH5.6..6h. 4107:::X1.2mg.mL.PZAvspH5.6..6h.A 4107:::X1.2mg.mL.PZAvspH5.6..7h. 4107:::X1.2mg.mL.PZAvspH5.6..7h.A 4107:::X100ug.mL.Cephalexin.Ctrl..6h 4107:::X100ug.mL.TriclosanvsEtOH..6hA 4107:::X10ug.mL.Amikacin.EtOH..6h 4107:::X10ug.mLchlorpromazinevsctrl.6hA 4107:::X10uM.ValinomycinvsDMSO..6h 4107:::X130ug.mL.TLMvsDMSO..6h 4107:::X130ug.mL.TLMvsDMSO..6hA 4107:::X1ug.mL..111891vsDMSO..6h 4107:::X1ug.mL..124196vsDMSO..6hA 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X25J.UVvs.ctrl..6h. 4107:::X2mM.DTTvsDMSO..6h 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X2ug.mL.PA824.DMSO..6h..2 4107:::X30ug.mLProcept6776vsDMSO.6h 4107:::X40ug.mL.EtavsEtOH..6h 4107:::X40ug.mL.EtavsEtOH..6hA 4107:::X4mM.H2O2vsctrl..1h. 4107:::X4mM.H2O2vsctrl..4h.A 4107:::X50ug.mL.PA.1vsDMSO..6h 4107:::X50ug.mL.VerapamilvsDMSO..6h 4107:::X50uM.CCCP.DMSO..6h..2 4107:::X50uM.CCCPvsDMSO..6h 4107:::X6ug.mL.MenadionevsDMSO..6h 4107:::X80ug.mL.5CL.pH5.6..2h. 4363:::H37Rv.hypoxia.12hr.rep.2 4363:::H37Rv.hypoxia.4hr.rep.2 4363:::H37Rv.hypoxia.8hr.rep.2 4365:::H37Rv.diamide.1h.rep.6 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.6 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep4 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Purified.Surfactant.Lipids.30min.rep.2 4581:::H37Rv.Ctrl.vs.5.ug.ml.garlic.extract.6hrs 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection..DS..rep.1 4615:::AA_30uM_2h_04 4615:::AA_30uM_2h_07 4615:::AA_30uM_4h_02 4615:::AA_30uM_4h_05 4615:::AA_30uM_4h_06 4615:::AA_30uM_4h_07 4615:::AA_60uM_2h_T0_01 4615:::Acetate.3mM.10m.01 4615:::Acetate.3mM.10m.06 4615:::Acetate.3mM.2h.04 4615:::Acetate.3mM.2h.05 4615:::Acetate.3mM.30m.04 4615:::CK_LA_2h.3 4615:::CK.LA.2h.4 4615:::CK.MDG.2h.for.PA.NA.2 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_1h_05 4615:::L2A_30uM_2h_05 4615:::L2A_30uM_30min_03 4615:::L2A_30uM_30min_04 4615:::L2A_30uM_30min_07 4615:::L2A_30uM_4h_03 4615:::L2A_30uM_4h_05 4615:::LAA_50uM_10min_01 4615:::OA_50uM_1h_09 4615:::OA_50uM_24h_03 4615:::OA_50uM_24h_06 4615:::OA_50uM_30min_08 4615:::OA_50uM_4h_07 4615:::PA_100uM_2h_T0_01 4615:::PA_100uM_4h_T0_01 4615:::PA_10uM_10.min_01 4615:::PA_300uM_24h_T0_01 4615:::PA_300uM_4h_T0_01 4615:::PA_50uM_10min_01 4615:::PA_50uM_30min_03 4615:::PA_50uM.0.5.BSA_1h_01 4615:::PA_50uM.OA_10uM_24h_02 4615:::Rv.MT106_100603_01 4615:::Rv.MT71_100703_01 4615:::Rv.MT90_100603_01 4615:::Rv.MT90_100703_01 4615:::Rv.MT96_100603_01 4615:::Rv.MT96_100703_01 4615:::Starvation_1254_12h_04 4615:::Starvation_1254_24h_02 4615:::Starvation_1254_24h_06 4615:::Starvation_1254_6h_01 4615:::Starvation_1254_6h_03 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_12h_02 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_1254_OA50_12h_04 4615:::Starvation_1254_OA50_24h_01 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_OA50_5d_02 4615:::Starvation_1254_OA50_6h_01 4615:::Starvation_1254_OA50_6h_04 4615:::Starvation_1254_PA50_24h_03 4615:::Starvation_1254_PA50.OA30_24h_01 4615:::Starvation_1254_PA50.OA30_24h_02 4615:::Starvation_1254_PA50.OA30_24h_04 4615:::Starvation_1254_PA50.OA30_6h_02 4615:::TBD091 4615:::TBE736 4615:::WT_65.4_SDS_02 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.1 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.2 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.1 4731:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.3 4815:::H37Rv.reaeration.for.4hrs.rep.7 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.1 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.4 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.5 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep1 Raghavan_Nature2008:::WT.rep2
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RV3706C 0.0999245569594956 0 -0.197850622779802 0.161877782274383 -0.305769144296057 -1.25904941768964 NA -1.07918521516255 -1.09717163541526 0.575565448086695 0.755429650613787 -0.809388911371915 -1.47488646072216 -1.11515805566797 0.265708481005932 0 0.840155156541022 -0.769156129227696 0.366828307785517 1.10048492335655 0.556159047287719 1.85780788136536 1.12415126579433 0.911154183854348 0.24849659559664 0.674490759476595 0.044966050631773 -0.539592607581276 -0.674490759476595 -0.044966050631773 0.539592607581276 0.725588544285428 0.0715368987323661 -0.214610696197099 0.401482594926545 -0.883261708838399 -0.690550063273657 -0.786905886056028 -1.10809196199726 -0.337245379738298 0.497838417708915 0.433601202520668 1.01173613921489 -0.465719810114792 0.658431455679533 0.433601202520668 0.754787278461904 0.0481779113911853 1.49351525312675 -0.686119910502054 -1.01173613921489 -2.96543351149193 0.988477837163976 0.0348874530763755 0.267470473585546 0.0230595131444989 0.853201986346462 0.530368802323477 0.0345892697167484 0 0.749434177196217 0.657196124618221 1.0261483349302 -2.04076691328816 -1.40663030181444 -0.726374664051718 -0.853201986346462 -0.622606854901472 -2.2367727750164 0.322833184022986 0.357422453739734 0.438130749745481 0.622606854901472 -0.426600993173231 -0.484249776034479 0.564958072040225 0.588017585184724 -0.207535618300491 0.265184401161738 0.46119026288998 -0.184476105155992 -1.40663030181444 0.0461190262889979 -0.138357078866994 -0.115297565722495 1.52192786753693 1.37204103209769 0.334362940595235 0.945440038924458 -0.772493690340716 -1.97158837385466 -1.78711226869867 -1.56804689382593 -1.36051127552544 -1.40663030181444 0.530368802323477 -0.645666368045972 -0.772493690340716 -0.0345892697167485 -1.59110640697043 0.299773670878487 0.380481966884233 0.345892697167485 0 -1.93699910413791 -0.44966050631773 0.634136611473722 -0.784023446912965 -0.553428315467976 -2.85937962991787 -1.29133273609194 -0.161416592011493 -0.023059513144499 -1.2336839532307 -0.89932101263546 0.530368802323477 0.922380525779959 -1.54498738068143 -0.507309289178978 2.75561182076763 -1.55651713725368 0.274011871037367 0.872622420072845 0.746155402670984 0.702594541121454 -0.297569452710263 -0.257893525682227 -0.495949087850438 0.357083343252315 1.07125002975695 -0.912546321644805 -0.0793518540560699 -0.674490759476595 0.595138905420525 0.595138905420525 0.991898175700875 0.47611112433642 -0.991898175700875 -0.23805556216821 -0.178541671626158 0.327877452523345 -1.00236821199994 -0.00936792721495272 -1.41478549548749 1.16938338773161 0.00399106958270175 0.0997767395675437 0.797989067549775 -1.38698099836032 0.147544853635505 0.337245379738298 0.927424794280318 0.400478888439228 0.990658302981249 0.611257250775664 0.400478888439228 0.969580466747606 0.274011871037367 0.864191285579388 0.337245379738298 0.126467017401862 -1.26467017401862 -0.316167543504654 0.75880210441117 -1.20143666531769 0.252934034803723 1.09604748414947 -0.29508970727101 0.29508970727101 -0.0421556724672872 0.906346958046675 0.147544853635505 -0.252934034803723 0.210778362336436 0.52694590584109 0.864191285579388 -0.274011871037367 0.379401052205585 -1.9813166059625 -4.19448941049508 -0.379401052205585 -2.40287333063537 -1.09604748414947 -0.0210778362336436 -1.41221502765412 0.358323215971941 0.906346958046675 -0.674490759476595 0.23185619857008 -0.337245379738298 0.147544853635505 -0.0843113449345744 1.24359233778497 -1.58083771752327 -2.29748414946715 -2.99305274517739 -2.23425064076622 -1.41221502765412 -2.78227438284096 -1.22251450155133 -1.79161607985971 -1.68622689869149 -1.79161607985971 -4.25772291919601 -4.23664508296236 -2.44502900310266 -1.24359233778497 -1.26467017401862 -1.70730473492513 -2.52934034803723 -2.17101713206529 -1.05389181168218 -0.611257250775664 0.990658302981249 0.906346958046675 1.3 -0.25 0.0532492704849944 0.550242461678275 0 1.05286362454883 0.296117894404359 0 -0.0674490759476595 0.973035849736728 0.4103829319707 2.41317805057182 -0.509615240493427 1.50463323267856 0.471488686236067 1.13943099173716 -0.28522649 0.319097275 -0.371561576273072 -0.977419942680119
[+] Show/hide bicluster #171 motif PSSM #1. bicluster 171 motif PSSM #1 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0.555556 0.444444 0 0
4 0.111111 0.111111 0 0.777778
5 0.666667 0.111111 0.111111 0.111111
6 0.888889 0 0 0.111111
7 0 1 0 0
8 0.555556 0.222222 0.222222 0
9 0 0 0.333333 0.666667
10 0 1 0 0
11 0 0 0.888889 0.111111 [+] Show/hide bicluster #171 motif PSSM #2. bicluster 171 motif PSSM #2 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 1 0 0 0
2 0 0.5 0.5 0
3 0 0.25 0.25 0.5
4 1 0 0 0
5 0 0.5 0.5 0
6 0 0 0.5 0.5
7 0 0 0.25 0.75
8 0 1 0 0
9 0 0.5 0.5 0
10 0.25 0 0 0.75
11 0 0 0 1
12 1 0 0 0
13 0 0.25 0.75 0
14 0 0 1 0
15 0 0.75 0.25 0
16 0 0 0 1
17 0 0 1 0
18 0.25 0 0.75 0
19 0 0.25 0.75 0
20 0 0 1 0
21 0 1 0 0 |