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[+] Show/hide bicluster #187 rows and columns.
bicluster 187
Mycobacterium tuberculosis H37Rv
16x243
[+] Show/hide bicluster #187 rows (genes).
bicluster 187 genes
Mycobacterium tuberculosis H37Rv
16
[+] Show/hide bicluster #187 rows (short gene names).
bicluster 187 short names
Mycobacterium tuberculosis H37Rv
16
short_name
[+] Show/hide bicluster #187 rows (long gene names).
bicluster 187 long names
Mycobacterium tuberculosis H37Rv
16
long_name
[+] Show/hide bicluster #187 rows (NCBI RefSeq gene IDs).
bicluster 187 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
32
[+] Show/hide bicluster #187 gene upstream sequences.
bicluster 187 upstream sequences
Mycobacterium tuberculosis H37Rv
16
upstream
[+] Show/hide bicluster #187 columns (arrays; conditions).
bicluster 187 arrays
Mycobacterium tuberculosis H37Rv
243
[+] Show/hide bicluster #187 ratios.
bicluster 187 ratios
Mycobacterium tuberculosis H37Rv
16x243
GENES 2885:::Strain.9800608...replicate.3 4055:::H37Rv.Vs.M.bovis.rep1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.2 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.6 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.6 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1 4100:::H37Rv.0.2..Oxygen..2h..4 4107:::DIPED.10ug.mL.vs.DMSO.12h.1 4107:::DIPED.5ug.mL.vs.DMSO.12h.2 4107:::EMB..10ug.mL..DMSO..12h 4107:::EMB.10ug.mL.vs.DMSO.12h.3 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050. 4107:::X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054. 4107:::X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053. 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051. 4107:::X.241..1ug.mL..DMSO..12h..1 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.NamvspH5.6..7h. 4107:::X0.1mg.mL.TriclosanvsEtOH..6h 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X0.5ug.mL..124196vsDMSO..6h 4107:::X1.2mg.mL.NamvspH5.6..10.5h. 4107:::X100uM.Dipyridylvsctrl..6h 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.Nvb.DMSO..6h..1 4107:::X10ug.mL.RoxvsEtOH..6h 4107:::X10ug.mL.TetvsEtOH..6h 4107:::X10ug.mL.TetvsEtOH..6hA 4107:::X1uM.ValinomycinvsDMSO..6h.A 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X25ug.mLCPZ.0.1mMGSNOvsDMSO.A 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X40ug.mL.5CL.pH5.6..4h..3 4107:::X4mM.H2O2vsctrl..2h. 4107:::X50ug.mL.PA.21vsDMSO..6h 4107:::X5ug.mLStreptomycinvsEtOH.6h 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.3 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4 4575:::Purified.Human.SP.A.Coated.2hrs.rep2 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.4 4581:::H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2 4583:::X5ug.ml.KCN.vs.DMSO.6hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs..DS..rep.3 4615:::AA_10uM_10.min_01 4615:::AA_30uM_10.min_06 4615:::AA_30uM_10.min_07 4615:::AA_30uM_10min_03 4615:::AA_30uM_1h_04 4615:::AA_30uM_1h_08 4615:::AA_30uM_24h_02 4615:::AA_30uM_24h_03 4615:::AA_30uM_24h_04 4615:::AA_30uM_2h_01 4615:::AA_30uM_30min_05 4615:::AA_30uM_30min_07 4615:::AA_30uM_4h_06 4615:::AA_3uM_10.min_01 4615:::AA_60uM_24h_03 4615:::Acetate.3mM.30m.04 4615:::Acetate.3mM.30m.05 4615:::C2_ceramide_5uM_1h_01 4615:::CK_PA.Na.24h.1 4615:::CK.AA.2h 4615:::CK.AA0.03.2h.02 4615:::CK.MDG.2h.for.PA.NA 4615:::CK.PA.Na.4h.2 4615:::ETYA_30uM_10min.02 4615:::ETYA_30uM_10min.04 4615:::Glucose_20mM_1h.OA_50uM_10min 4615:::L2A_30uM_10min_03 4615:::LAA_50uM_30min_01 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_02 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261_04 4615:::MDA_1254.pMV261.3524_02 4615:::MTB1254_FA5_10min_02 4615:::MTB1254_FA5_10min_03 4615:::MTB1254_FA5_1h_01 4615:::MTB1254_Pellicle_10D_03 4615:::MTB1254_Pellicle_14D_01 4615:::MTB1254_Pellicle_14D_04 4615:::MTB1254_SDS_90MIN_02 4615:::MTB1254.0465.4._SDS_60MIN_01 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.0485.1._OA_10m_03 4615:::MTB1254.0485.1._OA_30m_01 4615:::MTB1254.0485.1._PA_10m_01 4615:::MTB1254.0485.1._PA_12h_03 4615:::MTB1254.0485.1._PA_30m_02 4615:::MTB1254.0485.1._PA_30m_03 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._OA_30MIN_01 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_02 4615:::MTB1254whiB4_SDS_90MIN_01 4615:::MTB1254whiB4_SDS_90MIN_02 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_03 4615:::OA_50uM_10min_07 4615:::OA_50uM_1h_08 4615:::OA_50uM_1h_09 4615:::OA_50uM_1h_10 4615:::OA_50uM_24h_03 4615:::OA_50uM_24h_04 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::OA_50uM_30min_04 4615:::OA_50uM_4h_03 4615:::OA50um_10min.10mM_G_20min 4615:::PA_50uM_10min_01 4615:::PA_50uM_10min_07 4615:::PA_50uM_1h_02 4615:::PA_50uM_24h_03 4615:::PA_50uM_24h_07 4615:::PA_50uM_24h_08 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_2h_T0_02 4615:::PA_50uM_30min_10 4615:::PA_50uM_30min_11 4615:::PA_50uM_8h_02 4615:::PA_50uM.0.5.BSA_1h_01 4615:::PA_50uM.0.5.BSA_4h_01 4615:::Rv.MT106_100503_01 4615:::Rv.MT96_100503_01 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Rv.p0485.1._OK 4615:::Rv3524.1_OA_10min 4615:::Starvation_OA50_24h_03 4615:::TBD043 4615:::TBD091 4615:::TBD097 4615:::TBD1113 4615:::TBD1268 4615:::TBD425 4615:::TBD662 4615:::TBD663 4615:::TBD816 4615:::TBD817 4615:::TBD819 4615:::TBE055 4615:::TBE059 4615:::TBF466 4615:::Test.2 4615:::Test.4 4615:::Tet_100uM_30M_01 4615:::Tet_20uM_30M_01 4615:::Tet_500ng_30M_01 4615:::Tet_5ug_30M_01 4615:::WM_1254_vs_1254whiB4_20day 4615:::WT_85.1_PA_10min_01 4615:::WT_85.1_PA_10min_02 4615:::X7H9_MTB1254.3524.1._OA50_10M_01 4615:::X7H9_PA_50uM_4h_T0_02 4615:::X7H9_PA100um_4h_T0_01 4615:::X7H9MTB1254.0465.4._SDS_90MIN_01 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.3 4731:::X10ug.ml.Ethambutol.vs.DMSO.12hrs.3 4731:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4731:::X5ug.ml.Streptomycin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.2 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.3 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.2 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.2 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages
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RV2265 1.05991405060608 -0.474641645557604 -0.775664373398084 0.48338504429156 -0.0337245379738298 -1.40518908224291 -0.370969917712127 -0.0604021575650682 0.543619418085614 -0.483217260520546 NA NA -2.67620527147165 -1.10964608817117 0.522186394433493 NA -1.10964608817117 -0.58745969373768 -0.108788832173644 -1.50128588399629 -0.805037358084968 0.348124262955662 -0.413397562259849 NA -0.435155328694578 0.522186394433493 -0.0870310657389156 -0.239335430782018 1.00085725599753 NA 0.752316616339279 0.285361475163175 0.337245379738298 -0.285361475163175 0.596664902613911 0.363187332025859 1.11550394836514 -0.129709761437807 -0.233477570588052 0.544780998038788 0.856084425489525 0.518839045751227 1.01173613921489 3.73564112940883 -0.311303427450736 0.492897093463666 0.518839045751227 -0.0778258568626841 NA -3.65781527254615 -1.11550394836514 NA -2.43854351503077 NA NA -1.01173613921489 1.58245908954124 0.804200520914402 -0.518839045751227 NA NA NA NA NA 1.43641550629275 -0.562075632897163 -2.38569879740796 -1.02888420937108 0.320097309582113 -2.05279796362442 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.0171190548090507 -0.0171190548090507 NA 0.195157224823177 -0.0787476521216329 1.33186246414414 1.04426234335209 NA -1.34898151895319 0.692720239462449 -0.656261279490741 0.473966479632202 -2.44275031810443 2.00524279844393 -1.23960463903807 -0.0364589599717079 1.23960463903807 -1.53127631881173 1.93232487850052 3.75527287708591 2.00524279844393 -0.875015039320988 0.765638159405865 1.0999387769926 2.2413846776453 0.581099731241374 0.0415071236600982 -1.48816215186106 -0.631665949351097 -2.30183354424552 0.974264430355082 0.503191518974603 -0.674490759476595 -0.880585158205555 0.0374717088598109 0.477764287962588 -0.337245379738298 NA NA NA 0.308543645292485 0.351908222335615 -0.674490759476595 1.42229573193978 0.638031799504887 0.966162439250258 0.401048559688786 0.200524279844393 0.45728187083159 0.716408264302824 0.091456374166318 0.503010057914749 0.320097309582113 -0.840178044686513 NA 0.00725
[+] Show/hide bicluster #187 motif PSSM #1. bicluster 187 motif PSSM #1 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 0 0 1 0
2 0 1 0 0
3 1 0 0 0
4 0 0 0.5 0.5
5 0 1 0 0
6 0 0 0.5 0.5
7 0 0.5 0 0.5
8 0 0 1 0
9 0.5 0 0 0.5
10 0 0 0 1
11 0 0 1 0
12 0.5 0 0.5 0
13 0 0 1 0
14 0 0.5 0.5 0
15 0 0.5 0.5 0
16 0 1 0 0
17 0 0 0 1
18 1 0 0 0
19 0 0 1 0
20 0 1 0 0
21 0 0 0 1
22 0.5 0.5 0 0
23 0.5 0 0.5 0
24 1 0 0 0 [+] Show/hide bicluster #187 motif PSSM #2. bicluster 187 motif PSSM #2 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0 0 0.25 0.75
2 0.375 0.5 0.125 0
3 1 0 0 0
4 0 0.25 0.5 0.25
5 0 0.875 0 0.125
6 0.25 0.5 0.25 0
7 0 0.625 0.25 0.125
8 0 0.25 0.75 0
9 0.625 0 0.125 0.25
10 0.125 0.625 0 0.25
11 0 0.375 0.625 0
12 0.25 0.25 0.5 0
13 0 1 0 0
14 0.125 0.5 0 0.375
15 0 0 1 0
16 0.875 0.125 0 0
17 0 0.25 0 0.75
18 0 0.375 0.625 0
19 0.375 0.625 0 0
20 0 1 0 0
21 0.625 0 0 0.375 |