|
[+] Show/hide bicluster #214 rows and columns.
bicluster 214
Mycobacterium tuberculosis H37Rv
9x239
[+] Show/hide bicluster #214 rows (genes).
bicluster 214 genes
Mycobacterium tuberculosis H37Rv
9
[+] Show/hide bicluster #214 rows (short gene names).
bicluster 214 short names
Mycobacterium tuberculosis H37Rv
9
short_name
[+] Show/hide bicluster #214 rows (long gene names).
bicluster 214 long names
Mycobacterium tuberculosis H37Rv
9
long_name
[+] Show/hide bicluster #214 rows (NCBI RefSeq gene IDs).
bicluster 214 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
18
[+] Show/hide bicluster #214 gene upstream sequences.
bicluster 214 upstream sequences
Mycobacterium tuberculosis H37Rv
9
upstream
[+] Show/hide bicluster #214 columns (arrays; conditions).
bicluster 214 arrays
Mycobacterium tuberculosis H37Rv
239
[+] Show/hide bicluster #214 ratios.
bicluster 214 ratios
Mycobacterium tuberculosis H37Rv
9x239
GENES 2867:::H37Ra..Youman.media.replicate.3 2867:::H37Rv..7H9.shake.replicate.1 2867:::H37Rv..Sauton.s.media.replicate.2 2885:::Strain.1254...replicate.3 2885:::Strain.3160..replicate.1 2885:::Strain.9800608...replicate.3 2885:::Strain.9802826..replicate.3 2885:::Strain.M3061a..replicate.4 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.2 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.1 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.2 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.2 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.3 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.2 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.5 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.6 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.3 4082:::H37Rv.wild.type.Vs.Rv3676.null.7 4082:::Rv3676.null.Vs.H37Rv.wild.type.7 4084:::High.iron.wt.vs.high.iron.ideR.Complement.1a 4084:::High.iron.wt.vs.high.iron.ideR.Complement.1b 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4084:::High.iron.wt.vs.high.iron.ideR.KO.3a 4084:::High.iron.wt.vs.low.iron.wt.2b 4084:::High.iron.wt.vs.low.iron.wt.3b 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.2 4100:::H37Rv.0.2..Oxygen..2h..1 4101:::H37Rv.Day.0.rep.3 4101:::H37Rv.Day24.3 4101:::H37Rv.Day60.3 4101:::NRP.Day14..5 4101:::NRP.Day6..1 4101:::NRP.Day6..2 4101:::NRP.Day6..3 4101:::NRP.Day8..2 4107:::pH4.8vspH6.8..11h. 4107:::pH5.2vspH6.8..10.5h. 4107:::pH5.6vspH6.8..5h. 4107:::pH5.6vspH6.8..7h. 4107:::WT.t.0h.WT.t.6h..2 4107:::WT.t.6h.WT.t.0h..1 4107:::X.241..1ug.mL..DMSO..12h..1 4107:::X0.12mg.mL.BZAvspH5.6..5h. 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.13mg.mL.TLMvsDMSO..6hA 4107:::X0.15mg.mL.TricvsEtOH..6h 4107:::X0.1mM.GSNO.DMSO..6h 4107:::X0.1ug.mL.RifpvsEtOH..6hA 4107:::X0.2mg.mL.TLMvsEtOH..6hA 4107:::X0.2ug.mL..111891.DMSO..5.5h..3 4107:::X0.2ug.mL.INH.EtOH..6h 4107:::X0.2ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2ug.mL.Mtmvsctrl..1.5h. 4107:::X0.2ug.mL.Mtmvsctrl..2h.A 4107:::X0.2ug.mL.Mtmvsctrl..2h.B 4107:::X0.2ug.mL.Mtmvsctrl..4h. 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X0.32ug.mL.CervsEtOH..6h 4107:::X0.4ug.mL.PA824.DMSO..6h..1 4107:::X0.5ug.mLRifapentinevsEtOH.6hA 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..6h.A 4107:::X1.2mg.mL.PZAvspH5.6..7h. 4107:::X100ug.mL.Ceph.DMSO..6h 4107:::X100ug.mL.TriclosanvsEtOH..6hA 4107:::X10ug.mL..109vsDMSO..6h 4107:::X10ug.mL..109vsDMSO..6hA 4107:::X10ug.mL.OfloxvsDMSO..6hA 4107:::X10ug.mL.PA.1vsDMSO..6hB 4107:::X20ug.mL.Prcp.6778.DMSO..6h..1 4107:::X24ug.mL.cltrmazole.DMS..6h..3 4107:::X25J.UVvs.ctrl..6h. 4107:::X2mM.DTTvsDMSO..6h.A 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X2ug.mL..111895vsDMSO..6hB 4107:::X4mM.H2O2vsctrl..4h.A 4107:::X50ug.mLAntimycinAvsDMSO..6hA 4107:::X5ug.mLStreptomycinvsEtOH.6h 4107:::X5ug.mLStreptomycinvsEtOH.6hA 4107:::X60J.UV.ctrl..2h. 4107:::X60ug.mL.ChlorprovsEtOH..6h 4363:::H37Rv.hypoxia.1.day.rep.7 4363:::H37Rv.hypoxia.12hr.rep.2 4363:::H37Rv.hypoxia.7.day.rep.2 4363:::H37Rv.hypoxia.7.day.rep.7 4363:::H37Rv.hypoxia.8hr.rep.2 4364:::H37dosR.mutant.hypoxia.4.day.rep.1 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4364:::H37dosR.mutant.hypoxia.4hr.rep.2 4364:::H37dosR.mutant.hypoxia.8hr.rep.3 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.3 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.1 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.2 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.4 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2 4575:::Extracted.Lung.Surfactant.30min.rep.2 4583:::X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.3 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.1 4615:::AA_30uM_30min_01 4615:::AA_30uM_4h_03 4615:::AA_30uM_4h_06 4615:::Acetate.3mM.10m.07 4615:::Acetate.3mM.2h.04 4615:::Acetate.3mM.2h.05 4615:::Acetate.3mM.60m.03 4615:::CHP_25uM_2h_01 4615:::CK.AA0.03.2h.02 4615:::CK.for.AA.Na.4h.2 4615:::CK.for.OA.4h.1 4615:::Glucose_20mM_1h.OA_50uM_10min 4615:::L2A_30uM_1h_02 4615:::L2A_30uM_1h_03 4615:::L2A_30uM_2h_02 4615:::L2A_30uM_30min_03 4615:::L2A_30uM_4h_07 4615:::MTB1254_Bottom_10D_01 4615:::MTB1254_Bottom_10D_02 4615:::MTB1254_Bottom_42D_03 4615:::MTB1254_FA5_10min_02 4615:::MTB1254_SDS_90MIN_02 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.1683._01 4615:::MTB1254.B4.1._PA_4h_01 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_01 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_02 4615:::MTB1254TA1_OA.30min_03 4615:::MTB1254vsMTB1254.0485.1. 4615:::OA_50uM_10min_03 4615:::OA_50uM_1h_01 4615:::OA_50uM_1h_03 4615:::OA_50uM_24h_03 4615:::OA_50uM_2h_09 4615:::OA_50uM_2h.1.5..BSA_30min_01 4615:::OA_50uM_30min_07 4615:::OA_50uM_30min_08 4615:::OA_50uM_4h_04 4615:::PA_50uM_1h_06 4615:::PA_50uM_2h_08 4615:::PA_50uM_30.min_05 4615:::PA_50uM_30.min_06 4615:::PA_50uM_30min_08 4615:::PA_50uM_3d_05 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_50uM.OA_10uM_2h_04 4615:::PA_50uM.OA_10uM_4h_01 4615:::PA_50uM.OA_30uM_30min_02 4615:::Rv_OA30_30mim_01 4615:::Rv_OA30_30mim_03 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Rv.pMV261Km._300uM.PA_10m 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_PA50.OA30_6h_01 4615:::TBD1115 4615:::TBD1277 4615:::TBD426 4615:::TBE055 4615:::Test.2 4615:::Test.3 4615:::WM_1254_10d_02 4615:::WM_1254_14d_02 4615:::WM_1254.whiB4._10d_03 4615:::WM_1254.whiB4._14d_01 4615:::WT_65.4_SDS_01 4615:::WT_85.1_PA_10min_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.2 4638:::CDC1551.wild.type.vs.kstR.null.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.H37Rv.rep.1 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.2 4731:::X5ug.ml.Streptomycin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4815:::H37Rv.reaeration.for.12hrs.rep.2 4815:::H37Rv.reaeration.for.12hrs.rep.6 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.24hrs.rep.6 4815:::H37Rv.reaeration.for.4hrs.rep.1 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.4 4815:::H37Rv.reaeration.for.6hrs.rep.2 4815:::H37Rv.reaeration.for.6hrs.rep.4 4815:::H37Rv.reaeration.for.6hrs.rep.5 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep2 Raghavan_Nature2008:::espR.mutant.complemented.with.WT.espR..R...rep2 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs
RV0786C 0 0.6 0.35 -1.81269391609335 -1.6440712262242 -0.548023742074733 1.05389181168218 -1.18035882908404 -0.39675927028035 -0.277731489196245 0.595138905420525 -2.42023154871014 -0.595138905420525 0.656741002648264 -0.834238570931578 0.585741975334938 -0.479243434364949 -1.72172641234815 0.266246352424972 0.230746838768309 -0.869738084588241 1.43773030309485 -0.266246352424972 0.798739057274915 -1.26023273481153 1.40223078943818 NA NA -0.35 0.85 0.45 0.65 0.4 -0.65 -0.55 0.0890836852138899 1.33625527820835 0.26725105564167 0.241798574151987 0.419965944579767 1.87075738949169 -0.419965944579767 1.00537301884247 0.139988648193256 0.394513463090084 -0.216346092662304 -1.61623257459486 0.0465166041018342 1.44201472715686 -0.6 -1.51760420882234 3.2881424524484 0.969580466747606 0.126467017401862 -0.843113449345744 -0.505868069607446 -0.927424794280318 -0.210778362336436 -0.599547341756974 0.44966050631773 0.499622784797478 1.27403810123357 -1.02422670883483 0.324754810118361 0.374717088598108 1.02422670883483 0.774415316436091 -0.849358734155713 -0.424679367077856 -0.649509620236721 NA 1.54883063287218 -0.824377594915839 -0.649509620236721 -1.07418898731458 -0.0249811392398739 -0.324754810118361 0.824377594915839 -0.599547341756974 0.0499622784797478 1.49886835439243 0.224830253158865 -1.0492078480747 -0.999245569594956 -0.5745662025171 NA 0.0749434177196217 0.374717088598108 -0.849358734155713 2.8728310125855 0.999245569594956 0.474641645557604 -0.324754810118361 0.674490759476595 -1.44890607591269 -0.774415316436091 -0.374717088598108 0.724453037956343 1.07418898731458 -0.374717088598108 0.424679367077856 0.0749434177196217 -0.924302151875334 -0.749434177196217 -0.5745662025171 1.17411354427407 0.535896767803322 -0.757647154480559 0.184791988897697 0.905480745598717 -0.68373035892148 -0.0153293354426499 -0.367904050623597 0.674490759476595 0.659161424033945 0.1 0 1.30401546832142 0.575000000000001 NA NA -0.969580466747606 -0.599547341756973 -0.32813063974537 -0.583343359547326 NA -0.400478888439228 0.316167543504654 0.274011871037367 0.274011871037367 -1.38110012654731 1.05991405060608 -0.256948860752989 -1.6380489873003 -0.835083797447213 -0.289067468347112 -0.546016329100101 NA 0.610253544288348 1.79864202527092 1.15626987338845 2.92279329106525 -0.963558227823707 -2.858556075877 -1.70228620248855 -1.38110012654731 -0.353304683535359 0.417541898723607 0.674490759476595 0.160593037970618 0.160593037970618 -0.417541898723607 -0.513897721505977 1.7665234176768 -0.353304683535359 -0.642372151882472 0.0963558227823707 -1.31686291135907 -0.802965189853089 -0.44966050631773 -0.160593037970618 -2.7300816455005 -1.0920326582002 0.674490759476595 0 -1.86287924045917 1.15626987338845 NA -0.770846582258966 -0.160593037970618 1.41321873414144 NA 0.256948860752989 0.192711645564741 NA 0.321186075941236 -0.128474430376494 -0.963558227823707 -1.25262569617082 0.0642372151882472 -1.41321873414144 -1.05991405060608 -2.37677696196514 -0.0642372151882471 0.321186075941236 -1.95923506324154 -0.0642372151882471 -0.738727974664842 0.89932101263546 0.385423291129483 0.931439620229584 -0.513897721505977 0.44966050631773 1.34898151895319 0.128474430376494 0.963558227823707 0.256948860752989 0.481779113911854 0.770846582258966 -0.208410066130409 -0.48613562717595 -1.29962853655246 -0.970608653880954 0.460627835740114 0.741939835424255 -0.134898151895319 1.04546067718872 1.23798936865957 0.725717905765957 0.581457551272927 -0.958486868729898 -0.218753759830247 -0.725 NA -0.872068860737416 0.163512911388265 -0.749434177196217 0.939864173041157 -0.895635270780397 -0.674490759476595 -1.19112197950122 0.315719078903938 -0.157859539451969 -0.50228035280172 0.0574034688916251 -0.0861052033374377 0.875402900597283 2.36789309177954 0.38747341501847 0.275 NA -0.137084233082375 -0.602266901108858 NA 0.137084233082375 0.746714617844332 0.335662068096334 0.300829211973129 0.674490759476595
RV0787 0.29508970727101 0.29508970727101 1.13820315661675 -0.526102792391744 -0.472143531633617 -1.17361392148928 NA -0.526102792391744 -0.212997081939977 -0.390494650223292 0.674490759476595 -0.958486868729898 -2.66246352424972 NA NA NA NA NA NA NA NA NA NA NA NA NA 1.01173613921489 -1.01173613921489 0.809388911371914 0.674490759476595 0.629524708844822 0.629524708844822 -0.089932101263546 -1.70870992400737 -1.1691173164261 -0.20116391072109 0.437827335098842 0.579825389725494 1.10048492335655 0.0828321985322134 0.65082441703882 -0.698157101914371 2.52046546962307 0.863821498978797 0.911154183854348 0.65082441703882 -1.1478176082321 -0.45 0.95 -0.225 -2.09447130574311 2.41396692865308 1.66847714186316 0.638991245819932 0.177497568283315 -0.638991245819932 -0.390494650223292 -1.17148395066988 -1.12415126579433 0.774415316436091 0.974264430355082 -0.0499622784797478 2.34822708854815 1.19909468351395 -0.599547341756973 0.524603924037352 -0.374717088598108 -0.44966050631773 0.499622784797478 1.54883063287218 -1.0492078480747 0.999245569594956 0.12490569619937 -0.824377594915839 -0.224830253158865 -0.324754810118361 0.0999245569594956 NA -1.39894379743294 -1.37396265819306 4.92128443025516 4.29675594925831 -0.0249811392398738 -1.57381177211206 1.19909468351395 -1.32400037971332 -1.42392493667281 -0.699471898716469 0.774415316436091 1.44890607591269 1.29901924047344 1.44890607591269 0.199849113918991 0.849358734155713 -0.0999245569594955 -0.399698227837982 -1.19909468351395 1.99849113918991 0.349735949358235 0.949283291115208 0.949283291115208 -0.124905696199369 -0.699471898716469 -0.5745662025171 -0.724453037956343 2.04845341766966 0.83089441384798 NA NA 0.293256851946346 NA -2.69796303790638 0.15870370811214 0.21160494414952 0.039675927028035 1.01173613921489 0 0.674490759476595 NA 1.875 0.775 -0.5 -0.0080777336464263 0.337245379738298 -1.95602320248213 0.726374664051718 -0.853201986346462 1.06073760464695 -0.172946348583742 -0.322833184022986 -0.730698322766311 1.34898151895319 -1.29277395566347 -0.730698322766311 -0.44966050631773 -1.34898151895319 -0.815009667700886 NA 0.618283196186879 0.730698322766311 0.44966050631773 1.32087773730833 -1.01173613921489 -1.43329286388776 0.365349161383156 -2.55744412968209 -1.32087773730833 0.815009667700886 2.69796303790638 0.0843113449345744 -0.140518908224291 -0.337245379738298 -0.646386977831737 3.06331219928954 -0.562075632897163 -1.15225504743918 -1.06794370250461 0.0281037816448581 -0.674490759476595 -0.337245379738298 -0.843113449345744 -3.23193488915868 0.168622689869149 0.730698322766311 0.168622689869149 0.0843113449345744 1.34898151895319 -3.31624623409326 -1.91105715185035 -0.89932101263546 0.0843113449345744 0.533971851252305 0.730698322766311 1.34898151895319 -2.0796798417195 0.393452943028014 -0.702594541121453 -0.815009667700886 -1.06794370250461 0.421556724672872 -0.168622689869149 NA -1.7424344619812 -0.168622689869149 0 -0.421556724672872 0.75880210441117 -0.309141598093439 0.337245379738298 -0.196726471514007 0.505868069607446 -0.477764287962588 0.955528575925176 1.34898151895319 0.815009667700886 1.15225504743918 0.89932101263546 0.702594541121453 0.365349161383156 -0.0670301375877361 -0.709681581710157 -1.15060188381302 0 0.18515432613083 0.275165384463089 0.268454033622525 0.583887523128993 1.10299077137937 1.08712040056816 -0.0733142129865864 NA -0.709080029193344 -0.25 0.78978832519909 -0.709080029193344 0.34012781888136 -0.916615647493835 -0.032901988267151 -0.065803976534302 -0.498085483921178 -1.13452804670935 -0.996170967842356 1.01692452967241 -0.982335259955657 -0.816306765315264 -0.387399820827583 0.525756899694577 3.91550533193593 0.89932101263546 -0.224830253158865 0.548143516021068 NA NA NA NA NA 0.00750000000000001 0.2325 -0.44966050631773
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RV2060 1.07918521516255 0.134898151895319 -0.35073519492783 -2.32808100851599 -1.283708219649 0.0217577664347289 0.500428627998764 -0.761521825215511 -0.177497568283314 -0.425994163879955 0.745489786789921 -1.49097957357984 -2.09447130574311 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.799977412402473 1.77249897257803 0.32940246393043 0.203915811004552 0.423517453624839 0.235287474236022 -1.74112730934656 0.799977412402473 0.3607741271619 0.705862422708065 0.705862422708065 -1.05095071825423 -0.126467017401861 0.0421556724672872 NA -0.134898151895319 1.48387967084851 2.79913665182787 0.438418993659787 -0.505868069607446 NA -0.674490759476595 -1.55132874679617 -0.125486652925878 0.941149896944086 -0.407831622009104 0.219601642620287 0.847034907249678 2.1646447629714 -0.627433264629391 0.69017659109233 1.25486652925878 0.313716632314695 -0.815663244018208 0.627433264629391 NA 0.407831622009104 -1.59995482480495 NA -0.313716632314695 -0.65880492786086 -0.439203285240574 0.501946611703513 0.156858316157348 -0.0627433264629391 1.06663654986996 2.07052977327699 -1.03526488663849 -0.533318274934982 1.38035318218466 -1.34898151895319 0.376459958777634 0.219601642620287 NA -0.972521560175556 0.439203285240574 0.909778233712617 -0.627433264629391 0 -1.1293798763329 -0.596061601397921 -0.0627433264629391 -0.815663244018208 0.439203285240574 0.345088295546165 1.41172484541613 0.156858316157348 -1.59995482480495 -1.1293798763329 0.125486652925878 NA NA NA NA NA NA NA NA NA NA 0.421556724672872 NA NA -0.289067468347112 0.275 1.525 -0.494626556949503 -0.875831284693489 -1.16162297465414 0.112415126579433 NA NA NA NA NA -0.337245379738297 1.14663429111021 -0.404694455685957 -0.505868069607446 -0.337245379738297 -0.168622689869149 -0.370969917712127 -0.674490759476595 0.876837987319574 1.48387967084851 0.978011601241063 2.36071765816808 NA -1.9222986645083 -0.741939835424255 -0.269796303790638 -1.28153244300553 1.34898151895319 1.04546067718872 0.944287063267233 NA -0.876837987319574 -1.75367597463915 2.86658572777553 -0.809388911371914 -0.674490759476595 -1.07918521516255 -0.404694455685957 0.337245379738298 -0.573317145555106 -0.472143531633617 -4.11439363280723 -0.843113449345744 1.28153244300553 0.0337245379738298 -0.573317145555106 1.21408336705787 -3.13638203156617 -1.04546067718872 -1.58505328477 1.41643059490085 1.01173613921489 0.843113449345744 -0.640766221502765 NA 0.303520841764468 -0.472143531633617 -0.843113449345744 0.0674490759476596 0.168622689869149 0 NA NA 0.168622689869149 0.472143531633617 -1.11290975313638 1.14663429111021 -1.2478079050317 0.404694455685957 -0.0674490759476596 0.708215297450425 -0.505868069607446 0.134898151895319 2.36071765816808 1.71995143666532 2.02347227842979 2.1583704303251 0.640766221502765 0.472143531633617 -0.0868975825092546 -2.39818936702789 -0.043798101264714 NA 0.867202405041337 0.394823859205812 -1.18447157761744 0.723843741877322 0.918455502266002 0.746245095591127 0.385423291129483 NA -1.1691173164261 NA NA -0.638991245819932 NA -0.212997081939977 0.400478888439228 -1.4965263725887 NA NA NA NA NA NA NA NA NA NA -1.11823468018488 0.692902528636722 NA NA 0.205682795811372 1.14329872314182 0.106999367317176 -0.1325 0.3025 0.89932101263546
RV2253 1.46490961823823 -0.495329151490625 NA -2.34087969465407 -0.198379635140175 0 0.15870370811214 NA 0.415071236600982 -0.907968330064647 0.0259419522875614 -1.68622689869149 -1.03767809150245 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.939469272128115 -0.216800601260334 0.746757626563373 0.216800601260334 -0.650401803781003 -0.457690158216261 -0.554045980998632 -0.349735949358235 0.174867974679117 -0.174867974679117 -0.299773670878487 -0.199849113918991 -1.09917012655445 -0.0499622784797478 -0.149886835439243 0.324754810118361 -0.0499622784797478 1.77366088603105 0.12490569619937 -0.0421556724672872 2.19209496829893 NA -0.299773670878487 NA NA 0.0899321012635459 0.659502075932671 0 0.0899321012635459 0 0.0293256851946346 0.293256851946346 -0.175954111167807 NA 1.96482090804052 3.43110516777224 0.0586513703892691 -0.205279796362442 -0.0879770555839037 -0.175954111167807 -0.615839389087326 0.381233907530249 NA 0.439885277919519 -0.0879770555839037 NA 0.32258253714098 -0.645165074281961 -0.70381644467123 NA NA -0.557188018698057 1.46628425973173 0.410559592724884 -0.997073296617575 0.0879770555839037 1.08505035220148 0.293256851946346 NA NA -1.05572466700684 0.381233907530249 -0.293256851946346 0.0586513703892691 -0.351908222335615 -0.439885277919519 -2.2874034451815 -1.67156405609417 -0.557188018698057 NA 0.0586513703892691 0.0879770555839037 2.2874034451815 0.0879770555839037 -0.351908222335615 -0.0586513703892691 -0.674490759476595 0.146628425973173 NA NA NA NA NA -0.946554259097407 0.0623478853297693 0.674490759476595 0.209715614291042 -0.390494650223292 NA NA NA 0.505868069607446 0.236071765816808 NA -0.814250106034809 0 0.134898151895319 NA NA NA NA NA -0.39163979582512 -0.174062131477831 -0.217577664347289 NA -0.304608730086204 -0.826795124519697 -0.652732993041866 -0.152304365043102 -0.108788832173644 NA NA 0.522186394433493 -0.696248525911324 0.174062131477831 -0.739764058780782 -1.283708219649 0.0652732993041866 0.913826190258613 2.2628077092118 0.435155328694578 0.39163979582512 -2.17577664347289 0.348124262955662 1.78413684764777 0.456913095129306 -0.130546598608373 0.304608730086204 -1.91468344625614 -1.30546598608373 -1.74062131477831 -0.913826190258613 -1.45777035112683 -0.761521825215511 0.935583956693342 0.0435155328694577 -0.913826190258613 2.30632324208126 -0.913826190258613 0.0217577664347288 -1.43601258469211 1.24019268677955 NA 0.0435155328694577 0.718006292346053 -3.06784506729677 0.674490759476595 -0.478670861564035 -1.89292567982141 0.0870310657389155 0.543944160868222 -0.652732993041866 NA -1.02261502243226 1.21843492034482 0.543944160868222 0.500428627998764 0.935583956693342 -1.65359024903939 0.152304365043102 -0.239335430782018 0.369882029390391 -0.58745969373768 0.739764058780782 0.674490759476595 0.19581989791256 1.34898151895319 1.00085725599753 0.565701927302951 0.282850963651475 -0.447982668607589 -0.484675053940832 -0.217975672269875 -0.0370147368005448 1.1392313437501 -0.539592607581276 -0.318850177207118 0.220742430374158 1.23656639237376 0.688542650299024 0.0455736999646347 0 -0.404694455685957 -1.59425088603559 NA NA NA NA 0.0114320467707898 -2.4578900557198 NA NA NA NA NA NA NA NA NA NA -0.212339683538928 0.2326975125 NA NA NA NA NA -1.05891554467051 0.0506741762301069 0.674490759476595
RV3239C NA NA NA -1.10371215187079 -1.13437082275609 -0.429221392394197 1.07305348098549 -0.122634683541199 -1.6440712262242 -0.716646431943882 -0.210778362336436 -2.57149602050452 0.379401052205585 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.385423291129483 -0.385423291129483 NA 0.140518908224291 0.983632357570035 0 -0.927424794280318 0.196726471514007 0 0.51710958226539 0.157381177211206 1.05670218984667 0.404694455685957 0.562075632897163 1.07918521516255 -1.59629479742794 0.51710958226539 -0.044966050631773 0.607041683528936 -0.044966050631773 -1.23656639237376 -0.549585063277226 2.64800075942663 NA -0.292279329106525 1.10166824047844 1.61877782274383 -0.202347227842979 -0.741939835424255 -0.44966050631773 -1.43891362021674 -1.12415126579433 -0.930332082036683 2.16302209073529 1.69785604971695 0.39539113486559 1.37223982100411 1.00010698818943 -1.00010698818943 0.930332082036683 0.860557175883932 -0.372132832814673 -0.860557175883932 0.0465166041018341 NA 2.44212171534629 -0.627974155374761 0.116291510254585 -1.74437265381878 -0.837298873833015 -0.418649436916507 -0.39539113486559 -1.30246491485136 -1.41875642510594 2.06998888253162 3.11661247482289 0.279099624611005 -0.232583020509171 1.13965680049494 -1.58156453946236 -0.837298873833015 -0.302357926661922 -0.16280811435642 1.6280811435642 1.83740586202245 0.325616228712839 -1.04662359229127 0.930332082036683 -0.441907738967424 NA -1.0931401963931 0.302357926661922 0.907073779985766 0.860557175883932 0.860557175883932 0.279099624611005 -2.44212171534629 -2.46538001739721 -0.116291510254585 1.67459774766603 0.854354962003687 -1.14663429111021 NA 0.51710958226539 -0.247313278474752 -1.54169316451793 0.578134936694224 0.650401803781003 0.0963558227823708 1.52384949363231 -0.6 0 NA -0.05 0.5 NA -0.456913095129306 -0.674490759476595 -0.26497851265152 NA NA NA NA NA NA 1.37307047464878 -0.313156424042705 NA -0.746757626563373 -0.698579715172188 -0.62631284808541 -0.794935537954559 0.0481779113911853 NA 0.9876471835193 1.22853674047523 -0.891291360736929 -1.56578212021352 -1.6621379429959 -1.71031585438708 -0.698579715172188 0.385423291129483 1.15626987338845 1.03582509491049 0.0963558227823707 -1.18035882908404 -0.240889556955927 2.36071765816808 -0.843113449345744 0.144533734173556 0.240889556955927 -1.05991405060608 -0.26497851265152 -1.20444778477963 0.0722668670867781 NA -0.457690158216261 1.25262569617082 0.337245379738298 -0.216800601260334 1.42124838603997 -3.08338632903586 NA -1.58987107590912 0.529957025303039 NA 0.722668670867781 0.915380316432522 NA 0.26497851265152 -0.337245379738298 -1.20444778477963 -0.915380316432522 0.313156424042705 -0.939469272128115 -2.48116243664605 -1.10809196199726 0.505868069607446 0.843113449345744 -0.433601202520668 0.337245379738298 -1.18035882908404 0.939469272128115 0.0240889556955926 0.867202405041337 -1.25262569617082 0.192711645564741 1.6380489873003 1.08400300630167 2.40889556955927 2.52934034803723 1.51760420882234 -0.0481779113911854 -0.22347585404345 -0.451565847446195 -0.85586642589047 -0.266395510045378 0.821858488437868 0.466011797456557 0.147161620249439 0.269796303790638 0.871217230990602 0.721330395551359 0.0207535618300491 0 -0.652964458642236 -0.05 NA NA NA NA 0.674490759476595 -2.69796303790638 NA NA NA NA NA NA NA NA NA NA -0.627158074601045 0 NA NA NA NA NA -1.105 0.72 0.337245379738298
RV3591C NA NA NA -2.97706266251739 1.06988189434219 -0.860557175883932 NA -0.418649436916507 -0.651232457425678 -0.976848686138517 -0.116291510254585 0.16280811435642 -0.930332082036683 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.62631284808541 -0.62631284808541 0 NA 1.86287924045917 0.674490759476595 -0.128474430376494 -0.578134936694224 -0.80296518985309 -0.0435155328694578 -0.130546598608373 -0.0435155328694578 0.348124262955662 0.304608730086204 0.783279591650239 0.39163979582512 0.217577664347289 1.08788832173644 0.739764058780782 0.174062131477831 0.348124262955662 NA NA -1.63397761450668 NA NA NA NA NA NA NA NA -1.23656639237376 2.69796303790638 2.02347227842979 -0.0749434177196217 0.487132215177541 2.66049132904657 -0.0749434177196217 2.13588740500922 0.824377594915839 -0.524603924037352 0.0374717088598109 1.19909468351395 -1.08667955693451 -0.262301962018676 -0.412188797457919 -2.772906455626 -0.262301962018676 -1.23656639237376 -1.23656639237376 NA -0.711962468336406 -0.187358544299054 1.31150981009338 1.34898151895319 -0.524603924037352 -0.262301962018676 0.824377594915839 -1.01173613921489 0.337245379738298 -0.562075632897163 -0.187358544299054 1.91105715185035 0.112415126579433 0.412188797457919 0.0374717088598109 0.749434177196217 -1.42392493667281 -1.46139664553262 -0.337245379738298 0.412188797457919 0.149886835439243 0.749434177196217 0.599547341756974 0.224830253158865 -1.01173613921489 -1.08667955693451 -0.149886835439243 0.224830253158865 NA NA NA NA NA NA NA NA NA 1.1 -1.45 0 0 NA NA NA 0.0350384810117712 -0.2 0 NA NA NA NA NA 0.128474430376494 0.128474430376494 -0.89932101263546 NA -1.2205070885767 -0.385423291129483 -0.385423291129483 -0.192711645564742 1.02779544301195 NA 0.0963558227823707 1.28474430376494 -0.128474430376494 NA -0.0642372151882471 -0.353304683535359 -0.0642372151882471 -0.385423291129483 0.80296518985309 1.54169316451793 1.05991405060608 -1.86287924045917 -0.963558227823708 -0.417541898723607 0 -0.546016329100101 -0.160593037970618 -1.31686291135907 -0.321186075941236 0.995676835417831 0.160593037970618 NA -1.7665234176768 0.770846582258966 0.256948860752989 0.128474430376494 1.18838848098257 -1.02779544301195 NA -1.12415126579433 NA 2.858556075877 1.15626987338845 0.44966050631773 NA -0.128474430376494 -0.128474430376494 -0.224830253158865 -0.321186075941236 0.385423291129483 -0.674490759476595 NA NA -0.0321186075941236 -0.160593037970618 -1.44533734173556 1.02779544301195 -0.995676835417831 0.80296518985309 -0.578134936694225 0.995676835417831 0.321186075941236 -0.128474430376494 2.15194670880628 0.513897721505977 1.41321873414144 0.89932101263546 0.321186075941236 1.15626987338845 0.206698781129924 -0.652090697353756 -0.428042212744762 -0.367510990740453 0.0129709761437807 0.275 0.025 0.825 -0.249268324154394 0.894433398436354 0.421556724672872 NA -0.860557175883932 -1.07918521516255 3.1445852975598 -3.36333905739005 NA -0.62891705951196 1.11437603739611 -0.0879770555839037 NA NA NA NA NA NA NA NA NA NA -0.388343164547131 NA NA NA NA NA NA NA NA 0.224830253158865
[+] Show/hide bicluster #214 motif PSSM #1. bicluster 214 motif PSSM #1 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0.777778 0 0 0.222222
2 0 0.333333 0.111111 0.555556
3 0 0.555556 0 0.444444
4 0.777778 0.111111 0.111111 0
5 0.111111 0.777778 0 0.111111
6 0.111111 0.888889 0 0
7 0 0.333333 0.666667 0
8 0.222222 0 0.777778 0
9 0 0.222222 0.555556 0.222222
10 0.111111 0.111111 0.111111 0.666667
11 0.222222 0 0 0.777778
12 0.222222 0.111111 0.444444 0.222222
13 0.111111 0 0 0.888889
14 0 1 0 0
15 0.222222 0.666667 0.111111 0 [+] Show/hide bicluster #214 motif PSSM #2. bicluster 214 motif PSSM #2 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 0.333333 0 0.555556 0.111111
2 0.222222 0.666667 0.111111 0
3 0 0.888889 0.111111 0
4 0 0.111111 0.888889 0
5 0.333333 0.555556 0.111111 0
6 0 0.777778 0 0.222222
7 0.333333 0 0.111111 0.555556
8 0.131575 0.257314 0.035092 0.576019
9 0.020463 0.923981 0.035092 0.020463
10 0.020463 0.035092 0.590648 0.353797
11 0.020463 0.479537 0.479537 0.020463
12 0 1 0 0
13 0.555556 0 0.222222 0.222222
14 0.111111 0.111111 0.777778 0
15 0.333333 0.555556 0 0.111111
16 0 0.111111 0 0.888889
17 0 0.888889 0 0.111111
18 0 0.222222 0.777778 0
19 0 0 0.333333 0.666667
20 0 0.555556 0.222222 0.222222
21 0.111111 0 0.888889 0
22 0 0.444444 0.333333 0.222222
23 0.111111 0.777778 0 0.111111 |