Bicluster 258 (zzz

GENES 2867:::H37Rv..Youman.media.replicate.3 2867:::H37Rv..Youman.media.replicate.4 2885:::H37Ra..7H9.roll.replicate.1 2885:::H37Ra..7H9.roll.replicate.2 2885:::Strain.1006...replicate.2 2885:::Strain.3160..replicate.2 2885:::Strain.9800608..replicate.1 2885:::Strain.CDC1551..replicate.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.2 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.2 4084:::High.iron.wt.vs.low.iron.wt.1b 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.6 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.6 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.3 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.5 4099:::H37Rv.hypoxia.2hr.rep.1 4099:::H37Rv.hypoxia.2hr.rep.4 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6 4101:::NRP.Day10..1 4101:::NRP.Day10..2 4101:::NRP.Day10..3 4101:::NRP.Day14..5 4107:::EMB.10ug.mL.vs.DMSO.12h.1 4107:::EMB.10ug.mL.vs.DMSO.12h.2 4107:::pH4.8vspH6.8..5h. 4107:::pH5.2vspH6.8..11h. 4107:::pH5.2vspH6.8..16h. 4107:::UV.40J.vs.ctrl.12h.1 4107:::X.241..1ug.mL..DMSO..12h..1 4107:::X0.05mM.palmitatevs10mM.gluc 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.13mg.mL.TLMvsDMSO..6h 4107:::X0.1mg.mLTriclosanvsEtOH.6hB 4107:::X0.1ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2ug.mL.Mtm.ctrl..4h...1 4107:::X0.2ug.mL.Mtmvsctrl..4h. 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X10ug.mL.ChlorprovsEtOH..6h 4107:::X10ug.mL.EconazolevsEtOH..6h 4107:::X10ug.mL.RoxvsEtOH..6hA 4107:::X2mM.DTTvsDMSO..6h.A 4107:::X2mM.ZnSO4.DMSO..6h 4107:::X50ug.mL.PA.21vsDMSO..6h 4107:::X50uM.CCCP.DMSO..6h..2 4107:::X50uM.NigericinvsDMSO..6h 4107:::X5ug.mL.AmivsEtOH..6h 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.12hr.rep.2 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.7 4364:::H37dosR.mutant.hypoxia.12hr.rep.3 4365:::H37Rv.diamide.1h.rep.4 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.4 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.2 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.3 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.5 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5 4570:::MTB.strain.TB294.Ctrl.vs.SigA.overexpression.rep1 4575:::Extracted.Lung.Surfactant.30min.rep.1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.4 4575:::Whole.Lung.Surfactant.30min.rep.5 4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4615:::AA_30uM_10.min_04 4615:::AA_30uM_10.min_06 4615:::AA_30uM_10min_02 4615:::AA_30uM_1h_01 4615:::AA_30uM_1h_06 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_4h_03 4615:::AA_30uM_4h_06 4615:::AA_30uM_4h_07 4615:::AA_3uM_10.min_01 4615:::Acetate.3mM.2h.01 4615:::Acetate.3mM.2h.04 4615:::Acetate.3mM.30m.01 4615:::Acetate.3mM.30m.06 4615:::C2_ceramide_5uM_1h_01 4615:::CHP.AA.2h.1 4615:::ETYA_30uM_1h_01 4615:::L2A_30uM_10min_01 4615:::L2A_30uM_10min_03 4615:::L2A_30uM_1h_02 4615:::L2A_30uM_1h_03 4615:::L2A_30uM_30min_01 4615:::L2A_30uM_30min_02 4615:::L2A_30uM_30min_03 4615:::L2A_30uM_30min_04 4615:::L2A_30uM_4h_03 4615:::L2A_30uM_4h_05 4615:::L2A_30uM_4h_07 4615:::MDGCy3.7H9Cy5.01 4615:::MTB1254_Pellicle_14D_04 4615:::MTB1254_SDS_90MIN_02 4615:::MTB1254.0485.1._Act_2h_01 4615:::MTB1254.0485.1._OA_10m_02 4615:::MTB1254.0485.1._OA_10m_04 4615:::MTB1254.0485.1._PA_10m_04 4615:::MTB1254.3524.1._OA_10min_03 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254.B4.1._OA_10MIN_02 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254.B4.1.Compl._PA_30MIN_04 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::OA_50uM_1h_03 4615:::OA_50uM_24h_04 4615:::OA_50uM_2h_01 4615:::OA_50uM_2h_02 4615:::OA_50uM_2h_06 4615:::OA_50uM_2h..0.5.BSA.10mMGlu._30min_01 4615:::OA_50uM_2h..1.5.BSA.10mMGlu._30.min_01 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_4h_06 4615:::PA_100uM_24h_01 4615:::PA_10uM_10.min_01 4615:::PA_25uM_2h_T0_01 4615:::PA_50uM_10min_04 4615:::PA_50uM_1h_05 4615:::PA_50uM_1h_07 4615:::PA_50uM_1h_08 4615:::PA_50uM_24h_06 4615:::PA_50uM_30.min_04 4615:::PA_50uM_30min_09 4615:::PA_50uM_3d_05 4615:::PA_50uM_4h_02 4615:::PA_50uM.0.5.BSA_1h_01 4615:::PA_50uM.MAPP_4h_01 4615:::PA_50uM.OA_10uM_12h_01 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_4h_03 4615:::PA_50uM.OA_10uM_4h_04 4615:::PA_50uM.OA_30uM_24h_02 4615:::PA_50uM.OA_30uM_2h_02 4615:::PA_50uM.OA_30uM_2h_04 4615:::PA_50uM.OA_30uM_4h_05 4615:::PA_5uM_10.min_01 4615:::Rv_Rv3524.1 4615:::Rv.MT71_100503_01 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._OK 4615:::Rv3524.1_OA_10min 4615:::Spe_100uM_30M_01 4615:::Starvation_OA50_24h_03 4615:::Starvation_OA50_6h_01 4615:::Starvation_OA50_6h_02 4615:::TBD1111 4615:::TBD1268 4615:::TBD425 4615:::TBD622 4615:::TBD816 4615:::Test_361.1 4615:::Test.2 4615:::Tet_100uM_30M_01 4615:::Tet_20uM_30M_01 4615:::WM_T0_01 4615:::X7H9MTB1254_SDS_90MIN_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.rep.2 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4731:::X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A 4731:::X5ug.ml.Streptomycin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.4 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.4 4815:::H37Rv.reaeration.for.12hrs.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.5 4815:::H37Rv.reaeration.for.1hrs.rep.6 4815:::H37Rv.reaeration.for.24hrs.rep.5 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.5 4815:::H37Rv.reaeration.for.4hrs.rep.8 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.2 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.1 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.2 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.3 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs RV0277C -0.0697749061527517 0.0232583020509171 -0.299773670878486 -0.374717088598108 -0.674490759476595 0.374717088598109 0.562075632897163 -0.262301962018675 -0.620169356028816 -0.638276490511409 0.710705028441782 0.629222923270112 NA -1.79353224679004 -0.475209398722147 -0.904430791116344 1.33365218351054 -0.751137436689845 0.107305348098549 -0.689820094919245 0.0459880063279496 -1.18035882908404 -1.45628686705174 0.321916044295648 -0.674490759476595 -0.446622259653421 -0.410163299681713 0.337245379738298 -1.37632573893197 0.246097979809028 0.574228619554399 -0.865900299328061 -0.501310699610983 -0.428392779667567 -0.72006445944123 -0.00911473999292697 -0.0638031799504887 1.15757197910172 -1.24871937903099 0.483081219625129 NA 0.15 -0.15 0.6 NA 0.5 NA NA NA NA NA NA NA -0.772853995233599 0.660438868654166 -1.16630693826161 -0.857165340168173 -1.67217500786906 -0.800957776878457 -0.548023742074734 -1.3068258464859 0.0140518908224291 -0.632335087009308 -1.25061828319619 -1.19441071990647 -3.30219434327083 -1.36303340977562 0.0702594541121453 -0.548023742074734 0.266985925626152 10 1.6440712262242 0.60423130536445 0.351297270560727 4.48255317235487 -0.463712397140159 2.76822249201853 0.0887487841416573 0.443743920708286 0.337245379738298 1.88147422380313 -1.2424829779832 -0.408244407051623 3.0870923222198 0 -0.722668670867781 NA NA NA NA -0.85 -0.15 -1.3 -0.1 0.25 -0.1 0.44966050631773 -0.134898151895319 0.627974155374761 -0.971587879722238 0.0883261708838399 -1.37307047464878 1.08400300630167 -0.955528575925177 -1.05188439870755 -0.95222224867284 0.446493883033802 0.146628425973173 0.615839389087326 -0.527862333503422 -1.23167877817465 NA -0.32258253714098 -1.34898151895319 -1.6129126857049 -0.70381644467123 0.32258253714098 -0.205279796362442 -0.762467815060499 0.586513703892691 -1.34898151895319 0.0879770555839037 -0.557188018698057 0.762467815060499 -1.70088974128881 -0.557188018698057 -0.997073296617576 -1.524935630121 -0.674490759476595 -0.410559592724884 -1.29033014856392 -0.586513703892691 -0.997073296617576 -0.733142129865864 -0.615839389087326 0.791793500255134 -0.615839389087326 0.439885277919519 -0.791793500255134 -0.498536648308788 -0.263931166751711 0.0293256851946345 -0.586513703892691 -0.70381644467123 0.938421926228306 -0.175954111167807 0.498536648308788 -0.645165074281961 0.175954111167807 -0.0586513703892692 0.674490759476595 0.263931166751711 -2.05279796362442 0.439885277919519 0.850444870644402 0.117302740778538 0.32258253714098 -1.73021542648344 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