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[+] Show/hide bicluster #266 rows and columns.
bicluster 266
Mycobacterium tuberculosis H37Rv
11x242
[+] Show/hide bicluster #266 rows (genes).
bicluster 266 genes
Mycobacterium tuberculosis H37Rv
11
[+] Show/hide bicluster #266 rows (short gene names).
bicluster 266 short names
Mycobacterium tuberculosis H37Rv
11
short_name
[+] Show/hide bicluster #266 rows (long gene names).
bicluster 266 long names
Mycobacterium tuberculosis H37Rv
11
long_name
[+] Show/hide bicluster #266 rows (NCBI RefSeq gene IDs).
bicluster 266 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
22
[+] Show/hide bicluster #266 gene upstream sequences.
bicluster 266 upstream sequences
Mycobacterium tuberculosis H37Rv
11
upstream
[+] Show/hide bicluster #266 columns (arrays; conditions).
bicluster 266 arrays
Mycobacterium tuberculosis H37Rv
242
[+] Show/hide bicluster #266 ratios.
bicluster 266 ratios
Mycobacterium tuberculosis H37Rv
11x242
GENES 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Ra..Sauton.s.media.replicate.4 2885:::Strain.1006...replicate.3 2885:::Strain.1254...replicate.1 2885:::Strain.1843...replicate.2 2885:::Strain.3160...replicate.3 2885:::Strain.M3061a..replicate.1 4055:::H37Rv.Vs.M.bovis.rep1 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4084:::High.iron.wt.vs.high.iron.ideR.Complement.1b 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3a 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.high.iron.ideR.KO.2a 4084:::High.iron.wt.vs.low.iron.wt.2a 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.1 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.vs..MTB1254.rep6 4099:::H37Rv.hypoxia.2hr.rep.5 4100:::H37Rv.0.2..Oxygen..2h..3 4101:::H37Rv.Day14.1 4101:::H37Rv.Day14.2 4101:::H37Rv.Day24.3 4101:::H37Rv.Day6.1 4101:::H37Rv.Day6.2 4101:::H37Rv.Day6.3 4101:::NRP.Day10..1 4101:::NRP.Day10..2 4101:::NRP.Day12..1 4101:::NRP.Day14..2 4101:::NRP.Day14..3 4101:::NRP.Day14..5 4107:::DIPED.5ug.mL.vs.DMSO.12h.1 4107:::EMB..10ug.mL..DMSO..12h 4107:::pH4.8vspH6.8..2h.A 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051. 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052. 4107:::X0.12mg.mL.BZAvspH5.6..7h. 4107:::X0.12mg.mL.PZAvspH5.6..4h. 4107:::X0.12mg.mL.PZAvspH5.6..5.5h. 4107:::X0.1mg.mL.TriclosanvsEtOH..6h 4107:::X0.1mg.mL.TriclosanvsEtOH..6hA 4107:::X0.1mM.GSNO.DMSO..3.5h 4107:::X0.2mg.mL.AmpvsEtOH..6hC 4107:::X0.2mg.mL.TLMvsEtOH..6h 4107:::X0.2ug.mL.Mtm.ctrl..4h...2 4107:::X0.2ug.mL.Mtmvsctrl..2h.A 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X100ug.mL.Ceph.DMSO..6h 4107:::X100ug.mL.Cephalexin.Ctrl..6h 4107:::X10mM.Succinate.10mM.Gluc..2 4107:::X10ug.mL..59vsDMSO..6hA 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.PA.1vsDMSO..6hA 4107:::X10ug.mLmdn.0.1mMGSNO.DMSO..2 4107:::X12.5ug.mL.AntimycinvsDMSO..6h 4107:::X13ug.mL.clfzine.DMSO..6h..2 4107:::X1ug.mL..121940.DMSO..12h 4107:::X24ug.mL.cltrmazole.DMS..6h..3 4107:::X24ug.mL.Econazole.DMSO..6h..1 4107:::X24ug.mL.Econazole.DMSO..6h..2 4107:::X30ug.mLProcept6776vsDMSO.6hA 4107:::X40ug.mL.5CL.pH5.6..4h..1 4107:::X4mM.H2O2.ctrl..2h...1 4107:::X50ug.mL.PA.1vsDMSO..6h 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2 4364:::H37dosR.mutant.hypoxia.1.day.rep.4 4364:::H37dosR.mutant.hypoxia.4hr.rep.5 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.1 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.3 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.4 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.5 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.6 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.4 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep4 4575:::Purified.Surfactant.Lipids.2hrs.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.2 4615:::AA_30uM_10.min_06 4615:::AA_30uM_10.min_07 4615:::AA_30uM_1h_04 4615:::AA_30uM_24h_T0_01 4615:::AA_30uM_4h_03 4615:::AA_60uM_2h_T0_03 4615:::Acetate.3mM.10m_04 4615:::CHP_25uM_1h_01 4615:::CHP_25uM_24h_01 4615:::CHP_25uM_2h_01 4615:::CK.AA.2h 4615:::CK.for.OA.4h.1 4615:::CK.OA_NA_2H 4615:::CK.PA.NA.2h.02..100901 4615:::Glycerol_1._10M_01 4615:::L2A_30uM_10min_01 4615:::L2A_30uM_10min_02 4615:::L2A_30uM_10min_04 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_1h_03 4615:::L2A_30uM_4h_03 4615:::L2A_30uM_4h_06 4615:::MDG_1254.pMV261_03 4615:::MDG_1254.pMV261.3524_01 4615:::MTB1254_Bottom_14D_03 4615:::MTB1254_Pellicle_10D_03 4615:::MTB1254_Pellicle_21D_01 4615:::MTB1254_Pellicle_21D_02 4615:::MTB1254_Pellicle_42D_02 4615:::MTB1254_Pellicle_42D_03 4615:::MTB1254.0485.1._OA_10m_03 4615:::MTB1254.0485.1._OA_30m_02 4615:::MTB1254.0485.1._PA_30m_01 4615:::MTB1254.B4.1._OA_10MIN_01 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254vsMTB1254.0485.1. 4615:::OA_50uM_10min_01 4615:::OA_50uM_10min_03 4615:::OA_50uM_10min_08 4615:::OA_50uM_1h_08 4615:::OA_50uM_2h.1.5..BSA_30min_01 4615:::OA_50uM_30min_08 4615:::OA_50uM_4h_05 4615:::OA_50uM.0.5.BSA_4h_01 4615:::OA50um_10min.10mM_G_20min 4615:::PA_100uM_24h_T0_01 4615:::PA_100uM_2h_04 4615:::PA_100uM_4h_T0_01 4615:::PA_300uM_24h_T0_01 4615:::PA_300uM_4h_T0_01 4615:::PA_50uM_12h_06 4615:::PA_50uM_24h_04 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_2h_08 4615:::PA_50uM_2h_T0_02 4615:::PA_50uM_30min_08 4615:::PA_50uM_30min_09 4615:::PA_50uM_4h 4615:::PA_50uM_4h_07 4615:::PA_50uM.AA_30uM_2h_04 4615:::PA_50uM.OA_10uM_2h_01 4615:::PA_50uM.OA_10uM_2h_04 4615:::PA_50uM.OA_30uM_4h_03 4615:::Rv.3524.2._01 4615:::Rv.p0485.2._300uM.PA_4h 4615:::Spe_100uM_30M_01 4615:::Starvation_1254_PA50.OA30_6h_04 4615:::Starvation_OA50_24h_02 4615:::TBD042 4615:::TBD092 4615:::TBD1116 4615:::TBD1137 4615:::TBD1267 4615:::TBE734 4615:::TBE735 4615:::Test.5 4615:::WM_1254.whiB4._10d_02 4615:::WM_1254.whiB4._14d_01 4615:::WM_T0_01 4615:::WT_85.1_OA_10min_01 4615:::WT_85.1_OA_10min_02 4615:::X2.BA_500uM_30min_01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.2 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.2 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.1 4731:::X10ug.ml.capreomycin.vs.Ethanol..6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.3 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.4 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.5 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.5 4815:::H37Rv.reaeration.for.12hrs.rep.3 4815:::H37Rv.reaeration.for.1hrs.rep.8 4815:::H37Rv.reaeration.for.4hrs.rep.8 4815:::H37Rv.reaeration.for.6hrs.rep.2 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.2 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.1 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.2 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.3 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep1 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection Rohde_CellHostMicrobe2007:::CDC1551.in.ctrl.vs.100.nM.Concanamycin.A.treated.macrophages.for.2.hr Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages.for.24hrs
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RV3555C -1.16012410629974 0 0.456913095129307 -1.02261502243226 0.413397562259849 -1.1314038546059 0 NA -1.25262569617082 1.31686291135907 -1.18838848098257 -0.770846582258966 -0.256948860752989 0.256948860752989 0.425 0.475 -0.025 -0.475 0.675 0.331716766955703 -0.973035849736728 -0.221144511303802 1.26052371443167 0.995150300867108 1.12783700764939 0.619204631650645 2.4547040754722 NA -1.10572255651901 -0.530746827129124 -0.0884578045215207 -1.06149365425825 -1.54801157912661 0.552861278259504 -1.85761389495193 -1.30475261669243 0.0663433533911405 -0.645584012641884 -0.35 NA NA NA NA NA NA NA NA NA NA NA NA 0 -0.698579715172188 1.37307047464878 -0.843113449345744 0 0.650401803781003 0.289067468347112 -0.120444778477963 0.843113449345744 0.505868069607446 -0.843113449345744 -0.385423291129483 -0.770846582258966 0.0240889556955927 1.83076063286504 -0.144533734173556 -0.385423291129483 -0.62631284808541 -1.75849376577827 0.192711645564742 -0.385423291129483 -0.192711645564741 -0.650401803781003 -0.0963558227823707 0.891291360736929 -1.71031585438708 -0.529957025303039 -0.289067468347112 -0.963558227823707 0.578134936694224 0.433601202520668 3.46880962016535 0.62631284808541 NA -0.674490759476595 -0.197411929602906 0 1.68622689869149 0.632335087009308 0.590179414542021 -0.119027781084105 0.595138905420525 NA NA NA NA NA NA NA -0.190616953765125 0.395896750127567 0.86510771324172 -0.102639898181221 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.29913371925935 0.105572466700684 -3.01468043800843 0.95985223463977 NA NA NA NA NA NA NA -0.553428315467976 -1.41816005838669 0.760963933768466 -0.103767809150245 1.17603517036945 1.2106244400862 3.04385573507387 1.00308882178571 0.209324718458254 -1.00010698818943 0 -0.726374664051718 -0.290549865620687 -0.332056989280785 -0.124521370980295 0.674490759476595 0.843113449345744 -0.567992218506606 0.7 1.1 -1.85 NA 0 0.3 0.2 -0.674490759476595 0.786905886056028 -0.0306586708852998 -0.551856075935396 -0.0919760126558994 -0.122634683541199 0.278594009349028 -0.894433398436354 -1.33431867635587 0.469210963114153 NA NA 1.13022775912294 0.2749081175 NA -0.6625 -0.0385 -0.2575 1.34898151895319
[+] Show/hide bicluster #266 motif PSSM #1. bicluster 266 motif PSSM #1 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0.142857 0 0 0.857143
2 0.142857 0 0.142857 0.714286
3 0 1 0 0
4 0.428571 0.142857 0.285714 0.142857
5 0 0.285714 0.714286 0
6 0 0.857143 0 0.142857
7 0 0.285714 0.571429 0.142857
8 0 0 0.857143 0.142857
9 0.571429 0.428571 0 0
10 0 0.714286 0.142857 0.142857
11 0 1 0 0
12 0.714286 0 0.285714 0
13 1 0 0 0
14 0.142857 0.285714 0.285714 0.285714
15 1 0 0 0 [+] Show/hide bicluster #266 motif PSSM #2. bicluster 266 motif PSSM #2 Mycobacterium tuberculosis H37Rv 19x4
POSITION A C G T
1 0.25 0 0 0.75
2 0.25 0.25 0.5 0
3 1 0 0 0
4 0 1 0 0
5 0 1 0 0
6 0.25 0 0.75 0
7 0.25 0.25 0.25 0.25
8 0 1 0 0
9 0.25 0.5 0 0.25
10 0 0 0 1
11 0 0 1 0
12 0 1 0 0
13 0 1 0 0
14 0 1 0 0
15 0 0.25 0.75 0
16 0.5 0 0.5 0
17 0 1 0 0
18 0 0.25 0.75 0
19 1 0 0 0 |