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[+] Show/hide bicluster #269 rows and columns.
bicluster 269
Mycobacterium tuberculosis H37Rv
15x167
[+] Show/hide bicluster #269 rows (genes).
bicluster 269 genes
Mycobacterium tuberculosis H37Rv
15
[+] Show/hide bicluster #269 rows (short gene names).
bicluster 269 short names
Mycobacterium tuberculosis H37Rv
15
short_name
[+] Show/hide bicluster #269 rows (long gene names).
bicluster 269 long names
Mycobacterium tuberculosis H37Rv
15
long_name
[+] Show/hide bicluster #269 rows (NCBI RefSeq gene IDs).
bicluster 269 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
24
[+] Show/hide bicluster #269 gene upstream sequences.
bicluster 269 upstream sequences
Mycobacterium tuberculosis H37Rv
15
upstream
[+] Show/hide bicluster #269 columns (arrays; conditions).
bicluster 269 arrays
Mycobacterium tuberculosis H37Rv
167
[+] Show/hide bicluster #269 ratios.
bicluster 269 ratios
Mycobacterium tuberculosis H37Rv
15x167
GENES 2867:::H37Ra..Sauton.s.media.replicate.1 2867:::H37Ra..Sauton.s.media.replicate.2 2885:::Strain.3160...replicate.3 2885:::Strain.9700665..replicate.4 2885:::Strain.CDC1551..replicate.3 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.1 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.7 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2 4062:::MTB1254.Day.0.rep.1 4062:::MTB1254.Day.0.rep.2 4062:::MTB1254.Day.0.rep.3 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4101:::H37Rv.Day6.1 4101:::NRP.Day14..9 4107:::DIPED..100ug.mL..DMSO..12h..3 4107:::pH4.8vspH6.8..2h. 4107:::pH4.8vspH6.8..5h. 4107:::pH5.2vspH6.8..5h. 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::UV.40J.vs.8h.2 4107:::WT.t.0h.WT.t.6h..1 4107:::X0.12mg.mL.PZA.pH5.6..4h..2 4107:::X0.13mg.mL.TLMvsDMSO..6hA 4107:::X0.15mg.mL.TricvsEtOH..6h 4107:::X0.1mg.mLTriclosanvsEtOH.6hC 4107:::X0.1mM.GSNO.DMSO..3.5h 4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA 4107:::X0.1ug.mL.Mtmvsctrl..1.5h. 4107:::X0.2ug.mL.Mtmvsctrl..6h. 4107:::X0.32ug.mL.CervsEtOH..6h 4107:::X0.4mM.NaN3.DMSO 4107:::X0.5mM.DNP.DMSO..6h 4107:::X0.5ug.mL..124196vsDMSO..6h 4107:::X0.5uMValinomycin.70mMKClvsDMSO.6h 4107:::X10ug.mL.TriclosanvsDMSO..6h 4107:::X1mM.DNP.DMSO..6h..1 4107:::X2.5mM.Dinitrophenol.DMSO..6h 4107:::X20ug.mL.Prcp.6778.DMSO..6h..2 4107:::X20ug.mLProcept6778vsDMSO.6hB 4107:::X20uM.DCCD.DMSO..6h..1 4107:::X25ug.mL.TRZ.DMSO..6h 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X2ug.mL.PA824.DMSO..6h..1 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X50ug.mL.PA.1vsDMSO..6h 4107:::X50ug.mL.Thioridazine.DMSO..6h 4107:::X50uM.CCCP.DMSO..6h..1 4107:::X5ug.mL.AmivsEtOH..6h 4107:::X60J.UV.ctrl..2h. 4107:::X9ug.mLAscidideminNpvsDMSO.6h 4107:::X9ug.mLAscidideminNpvsDMSO.6hA 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4583:::X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4583:::X20ug.ml.KCN.vs.DMSO.6hrs 4615:::AA_30uM_24h_04 4615:::AA_30uM_2h_01 4615:::AA_30uM_4h_05 4615:::AA_60uM_24h_02 4615:::aceatate.induction.2 4615:::Acetate.3mM.2h.01 4615:::CK_AA_NA.2h 4615:::CK.2.2h.for.OA.NA.and.PA.NA 4615:::CK.AA.Na.2h 4615:::CK.for.AA.Na.4h.2 4615:::CK.MDG.2h.for.PA.NA.2 4615:::Glucose_5mM_10min_01 4615:::L2A_30uM_4h_T0_01 4615:::MTB1254.3524.1.T0_WtT0_01 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254vsMTB1254.0485.1. 4615:::MTB1254vsMTB1254.0494.4. 4615:::PA_100uM_2h_04 4615:::PA_10uM_10min_02 4615:::PA_50uM_2h_04 4615:::PA_50uM_3d_05 4615:::PA_50uM.MAPP_4h_01 4615:::Rv.MT71_100703_01 4615:::Rv.MT90_100503_02 4615:::Rv.MT90_100703_01 4615:::Rv.MT96_100703_01 4615:::Starvation_1254_OA50_6h_01 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::Starvation_T0 4615:::TBD044 4615:::TBD426 4615:::TBD625 4615:::TBD816 4615:::Test_361.3 4615:::X2.2..Dipyridyl_1mM.Dpd.AA_50uM_01 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.2 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4731:::X10ug.ml.capreomycin.vs.Ethanol..6hrs 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.3 Raghavan_Nature2008:::espR.mutant..R...rep2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.24.hr.after.macrophage.infection
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RV2127 -1.72111435176786 -0.0465166041018341 1.99281360754449 0.797125443017794 -0.705149430361895 0.55 -0.75 0.5 0.299773670878487 0.768170031626122 0.487132215177541 0.0187358544299054 0.880585158205555 0.936792721495271 0.711962468336406 0.843113449345744 0.299773670878487 -1.63001933540177 -1.57381177211206 -0.955528575925176 -1.63001933540177 -1.29277395566347 -0.562075632897163 -0.730698322766312 -1.44266079110272 -1.83611373413073 -1.44266079110272 -0.861849303775649 -1.08667955693451 -1.16162297465414 -2.15462325943912 -1.3677173733831 -0.65575490504669 -0.637019050616784 -2.51060449360733 -1.46139664553262 -2.24830253158865 0.524603924037352 -0.674490759476595 -0.711962468336406 0.131150981009338 -1.83611373413073 -0.524603924037352 -0.0749434177196217 -0.299773670878487 0.711962468336406 0.637019050616784 0.374717088598108 0.24356610758877 0.112415126579433 -0.112415126579433 1.0492078480747 1.0492078480747 0.430924651887825 0.168622689869149 0.149886835439243 0.168622689869149 -0.805641740485933 -0.711962468336406 0.974264430355082 0.711962468336406 0.487132215177541 0.880585158205555 0.355981234168203 -1.74754424046209 -4.01628588597427 0.981077468329593 0.715368987323662 -0.858442784788394 0.755429650613786 -1.59179819236476 -2.40118710373668 -1.53783893160664 0.755429650613786 0.458653716444085 0.890327802509105 0.431674086065021 -0.485633346823148 -1.91555375691353 1.29502225819506 0 -1.75367597463915 -0.0539592607581277 -0.512612977202212 NA -2.34722784297855 -1.42992041009038 0.107918521516255 -3.39943342776204 -2.48212599487387 -4.04694455685957 -0.539592607581276 0.161877782274383 0.998246324025361 -2.32024821259949 -2.8328611898017 -3.69620936193174 -1.72669634426008 -4.55955753406178 0.350735194927829 -0.107918521516255 -2.29326858222042 -2.69796303790638 0.188857412653447 -1.10616484554162 -0.188857412653447 0.774415316436091 0.374717088598108 0.6 -1.90148990703508 -0.380297981407016 0.782122263648392 1.23656639237376 NA -5.1710958226539 0.935583956693342 1.08788832173644 0.652732993041866 0.630975226607137 1.8058946140825 0.630975226607137 1.1314038546059 0.261093197216747 1.00085725599753 1.10964608817117 0.696248525911324 0.456913095129306 0.979099489562799 0.369882029390391 -0.152304365043102 0.805037358084968 0.718006292346053 -1.34898151895319 -0.19581989791256 -2.30632324208126 0.0435155328694578 -1.39249705182265 2.43686984068963 1.63183248260467 2.13226111060343 0.739764058780782 -3.78585135964282 -1.58831694973521 -1.02261502243226 1.04437278886699 1.10964608817117 0.848552890954426 -0.282850963651475 0.39163979582512 0.239335430782018 -0.348124262955662 -0.279977296386511 -0.5545812911252 1.21408336705787 0.404694455685957 0.164875518983168 -0.68151670488781 -0.453748329102437 -0.355640582269477 -0.993340936683713 -0.0122634683541198 1.13965680049494 -0.846860620231725 0.367222746826146 0.915591623061431 -2.75925 -1.54975
RV2128 -1.75 -1.25 1.1 2.85 -2.7 0.740294736010897 -1.46413847788822 NA 0.0963558227823707 0.693761924033069 0.134898151895319 0.250525139234164 0.693761924033069 0.366152126573009 0.886473569597811 -0.0770846582258967 0.847931240484862 -2.08128577209921 -2.58233605056754 -0.46250794935538 -0.867202405041337 -0.0385423291129483 -0.269796303790638 -0.46250794935538 -1.09845637971903 -3.19901331637471 -1.46460850629204 -1.38752384806614 -0.925015898710759 -0.0578134936694225 -1.61877782274383 -0.713033088589544 -0.828660075928389 -0.385423291129483 -1.02137172149313 -2.29326858222042 -1.92711645564741 -2.02347227842979 -0.674490759476595 -1.23335453161435 -1.00210055693666 -0.925015898710759 -1.61877782274383 -0.520321443024802 0 0.655219594920121 0.828660075928388 0.481779113911854 0.963558227823707 0.404694455685957 0.770846582258966 1.21408336705787 1.52242199996146 0.655219594920121 0.597406101250699 0.32760979746006 0.423965620242431 -0.847931240484863 -1.27189686072729 1.46460850629204 1.17554103794492 0.578134936694224 0.635948430363647 1.13699870883197 0.240889556955927 -0.0481779113911854 -0.433601202520668 -0.125 0.425 0.472143531633617 -1.52884572148028 -1.46139664553262 -0.314762354422411 0 -0.292279329106525 -1.70870992400737 -1.21408336705787 -0.292279329106525 -1.25904941768964 0.786905886056028 1.10166824047844 -0.472143531633617 0.607041683528936 0.854354962003687 0.472143531633617 -0.112415126579433 -1.55132874679617 1.23656639237376 -3.73218220243716 -2.1583704303251 -3.01272539232879 -2.63051396195872 NA 1.41643059490085 -4.11439363280723 -4.60902018975673 -2.90031026574936 -1.25904941768964 -3.73218220243716 0 -2.96775934169702 -3.82211430370071 -2.09092135437745 0.112415126579433 -0.674490759476595 -0.359728405054184 -0.404694455685957 -0.359728405054184 1.283708219649 -2.95876613157066 -0.494626556949503 0.0989253113899007 0.869343645547612 0.329751037966335 -6.17533762009683 0.529957025303039 0.0963558227823708 0.602223892389817 0.554045980998632 3.17974215181823 0.36133433543389 0.867202405041337 0.62631284808541 0.963558227823707 0.891291360736929 0.578134936694224 0.289067468347112 0.481779113911854 0.602223892389817 -0.62631284808541 1.01173613921489 0.192711645564742 -0.674490759476595 -0.650401803781003 -0.891291360736929 0.385423291129483 -0.409512246825076 1.56578212021352 0.433601202520668 1.54169316451793 1.87893854425623 -3.58925439864331 -2.81840781638434 -1.44533734173556 1.83076063286504 1.10809196199726 1.13218091769286 -1.25262569617082 0.144533734173556 0.192711645564742 -0.578134936694224 -0.982410454020258 -0.580062053149872 0.0674490759476595 0.256306488601106 2.4956158100634 -1.51483990243104 -0.786161415019078 -0.446682622169931 -1.24177768963241 -0.562820103934113 1.13392649419254 -1.97158837385466 0.311303427450736 -0.129709761437807 -2.07862602926117 -1.55024700195942
[+] Show/hide bicluster #269 motif PSSM #1. bicluster 269 motif PSSM #1 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 1 0 0 0
2 0 0.2 0.2 0.6
3 0 0 0.6 0.4
4 0.2 0 0 0.8
5 0 1 0 0
6 0.4 0 0.6 0
7 1 0 0 0
8 0 0.8 0 0.2
9 0.2 0 0.8 0
10 1 0 0 0
11 0 0.4 0 0.6 [+] Show/hide bicluster #269 motif PSSM #2. bicluster 269 motif PSSM #2 Mycobacterium tuberculosis H37Rv 19x4
POSITION A C G T
1 0 1 0 0
2 0.2 0.2 0 0.6
3 0 0.4 0.4 0.2
4 0.8 0 0 0.2
5 0 0.6 0 0.4
6 0.6 0 0 0.4
7 0 1 0 0
8 0 0.4 0 0.6
9 0.4 0 0.6 0
10 0.6 0 0.4 0
11 0 0 1 0
12 0 0 1 0
13 0 0 1 0
14 0 0 0.4 0.6
15 0 0.8 0.2 0
16 0 0 0.8 0.2
17 0.2 0.4 0.4 0
18 0 0.2 0.6 0.2
19 0 0 1 0 |