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[+] Show/hide bicluster #276 rows and columns.
bicluster 276
Mycobacterium tuberculosis H37Rv
13x241
[+] Show/hide bicluster #276 rows (genes).
bicluster 276 genes
Mycobacterium tuberculosis H37Rv
13
[+] Show/hide bicluster #276 rows (short gene names).
bicluster 276 short names
Mycobacterium tuberculosis H37Rv
13
short_name
[+] Show/hide bicluster #276 rows (long gene names).
bicluster 276 long names
Mycobacterium tuberculosis H37Rv
13
long_name
[+] Show/hide bicluster #276 rows (NCBI RefSeq gene IDs).
bicluster 276 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
24
[+] Show/hide bicluster #276 gene upstream sequences.
bicluster 276 upstream sequences
Mycobacterium tuberculosis H37Rv
13
upstream
[+] Show/hide bicluster #276 columns (arrays; conditions).
bicluster 276 arrays
Mycobacterium tuberculosis H37Rv
241
[+] Show/hide bicluster #276 ratios.
bicluster 276 ratios
Mycobacterium tuberculosis H37Rv
13x241
GENES 2867:::H37Ra..Youman.media.replicate.1 2885:::Strain.1843...replicate.2 2885:::Strain.1843..replicate.1 2885:::Strain.9700665..replicate.4 2885:::Strain.9802501..replicate.4 2885:::Strain.9802826..replicate.2 2885:::Strain.CDC1551..replicate.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.4 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.3 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4082:::H37Rv.wild.type.Vs.Rv3676.null.2 4082:::Rv3676.null.Vs.H37Rv.wild.type.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.1 4100:::H37Rv.0.2..Oxygen..2h..2 4101:::H37Rv.Day6.3 4107:::DIPED..100ug.mL..DMSO..12h..2 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::PBS.Tween.7H9 4107:::pH4.8vspH6.8..11h. 4107:::pH4.8vspH6.8..2h.A 4107:::pH4.8vspH6.8..2h.B 4107:::pH4.8vspH6.8..4h. 4107:::pH4.8vspH6.8..4h.B 4107:::pH4.8vspH6.8..4h.C 4107:::pH4.8vspH6.8..5.5h. 4107:::pH4.8vspH6.8..7h. 4107:::pH5.2vspH6.8..10.5h. 4107:::pH5.2vspH6.8..11h. 4107:::pH5.2vspH6.8..2h. 4107:::pH5.2vspH6.8..5.5h. 4107:::pH5.2vspH6.8..5h. 4107:::pH5.6vspH6.8..11h. 4107:::pH5.6vspH6.8..2h. 4107:::pH5.6vspH6.8..2h.A 4107:::pH5.6vspH6.8..4h. 4107:::pH5.6vspH6.8..4h.B 4107:::pH5.6vspH6.8..5h. 4107:::pH5.6vspH6.8..7h. 4107:::Succinate.7H9.based.medium..1 4107:::Succinate.7H9.based.medium..2 4107:::WT.t.6h.WT.t.0h..1 4107:::X0.02mM.GSNOvsDMSO..6h 4107:::X0.12mg.mL.PZAvspH5.6..6h. 4107:::X0.1ug.mL.Mtmvsctrl..0.33h. 4107:::X0.2ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2ug.mL.Mtmvsctrl..1.5h. 4107:::X0.5ug.mL..111891vsDMSO.6hA 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X0.5ug.mL..121940vsDMSO.6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X1.2mg.mL.PZAvspH5.6..7h. 4107:::X10ug.mL.EMBvsDMSO..6hA 4107:::X10ug.mL.Nvb.DMSO..6h..1 4107:::X1ug.mL..109vsDMSO..6hA 4107:::X1ug.mL..111895vsDMSO..6h 4107:::X1ug.mL..111895vsDMSO..6hA 4107:::X1ug.mL..124196vsDMSO..6h 4107:::X24ug.mL.Econazole.DMSO..6h..2 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X30ug.mLProcept6776vsDMSO.6h 4107:::X30ug.mLProcept6776vsDMSO.6hA 4107:::X50ug.mL.PA.21vsDMSO..6hA 4364:::H37dosR.mutant.hypoxia.1.day.rep.4 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4365:::H37Rv.diamide.1h.rep.3 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.3 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.4 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.5 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4575:::Extracted.Lung.Surfactant.30min.rep.1 4575:::Purified.Surfactant.Lipids.30min.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.3 4615:::AA_10uM_10.min_01 4615:::AA_10uM_10min_01 4615:::AA_30uM_1h_06 4615:::AA_30uM_24h_03 4615:::AA_3uM_10.min_01 4615:::AA_3uM_10min_02 4615:::AA_3uM_2h_T0_01 4615:::Acetate.3mM.10m.05 4615:::C2_ceramide_25uM_1h_01 4615:::CK_AA_NA.2h 4615:::CK_LA_2h.2 4615:::CK_LA_2h.3 4615:::CK_OA_NA_0.05_2h 4615:::CK_PA.Na.24h.1 4615:::CK.4h.for.AA.NA.0.03mM 4615:::CK.for.MDG.24h.PA.NA 4615:::CK.for.MDG.4h.PA.NA 4615:::CK.for.MDG.OA.4h 4615:::CK.for.OA.4h.1 4615:::CK.LA.2h.4 4615:::CK.OA_NA_2H 4615:::CK.PA.NA.101801.2 4615:::CK.PA.NA.2h.3..101801 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_10min_08 4615:::L2A_30uM_30min_02 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_02 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261_04 4615:::MDA_1254.pMV261.3524_01 4615:::MDA_1254.pMV261.3524_02 4615:::MDA_1254.pMV261.3524_03 4615:::MDG_1254.pMV261_03 4615:::MDG_1254.pMV261_04 4615:::MDG_1254.pMV261.3524_02 4615:::MDG.MD.glycerol 4615:::MTB1254_Pellicle_14D_02 4615:::MTB1254.1683._01 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.3524.2._INH_20MIN 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_04 4615:::OA_50uM_10min_06 4615:::OA_50uM_1h_09 4615:::OA_50uM_24h_01 4615:::OA_50uM_24h_02 4615:::OA_50uM_30min_05 4615:::PA_10uM_10.min_01 4615:::PA_10uM_10min_02 4615:::PA_25uM_2h_T0_01 4615:::PA_50uM_1h_01 4615:::PA_50uM_1h_03 4615:::PA_50uM_1h_06 4615:::PA_50uM_1h_08 4615:::PA_50uM_1h_09 4615:::PA_50uM_1h_10 4615:::PA_50uM_24h_10 4615:::PA_50uM_24h_T0 4615:::PA_50uM_2h_T0_01 4615:::PA_50uM_3d_03 4615:::PA_50uM_3d_06 4615:::PA_50uM_4h_03 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_30uM_2h_01 4615:::PA_5uM_10.min_01 4615:::PA_5uM_2h_T0_01 4615:::Rv.MT90_100903_01 4615:::TBD094 4615:::TBD662 4615:::TBD663 4615:::TBD817 4615:::TBE055 4615:::TBE057 4615:::Test_261B4.1 4615:::Test_361.1 4615:::Test_361.2 4615:::Test.5 4615:::Tet_500ng_30M_01 4615:::Tet_50ng_30M_01 4615:::Tet_5ug_30M_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.4 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1 Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.2.hr.after.macrophage.infection
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RV3408 0.0156858316157344 -1.14536166703573 0.738121963200802 0.610859555752388 -0.152714888938097 -0.127262407448414 -0.53450211128334 1.15736482592007 0.303520841764468 0.269796303790638 0.269796303790638 1.78740051261298 0.0337245379738297 0.978011601241063 -1.21408336705787 0.674490759476595 -1.45015513287468 0.236071765816808 -0.236071765816808 -2.05719681640362 0.404694455685957 -0.404694455685957 -1.38270605692702 -0.236071765816808 0.438418993659787 NA 1.11290975313638 -0.607041683528936 0.303520841764468 4.55281262646702 -0.910562525293404 1.45015513287468 -0.236071765816808 -0.809388911371914 -0.505868069607446 -0.269796303790638 -0.134898151895319 -0.337245379738298 -1.04546067718872 -0.843113449345744 -0.370969917712127 -0.843113449345744 -0.166540928265826 0.166540928265826 NA 1.57727069908373 0.601572839533179 -0.0321186075941235 -0.433601202520668 -1.31686291135907 -1.0920326582002 -0.594194240491286 -0.0802965189853089 -1.57381177211206 -1.44533734173556 -1.57381177211206 -0.690550063273657 -0.144533734173556 -3.21186075941236 -0.867202405041337 -0.867202405041337 -1.04385474680902 -1.17232917718551 -1.12415126579433 -0.722668670867781 -0.385423291129483 -0.690550063273657 -0.417541898723607 -0.642372151882472 -0.690550063273657 -0.738727974664842 -0.754787278461904 -1.23656639237376 -0.144533734173556 1.04385474680902 0.289067468347112 0.513897721505977 0.722668670867781 0.160593037970618 0.192711645564742 0.224830253158865 0.513897721505977 0.963558227823708 -0.0321186075941235 -0.546016329100101 -0.240889556955927 0.562075632897163 0.578134936694225 0.770846582258966 NA -0.610253544288348 1.41321873414144 1.31686291135907 0.160593037970618 1.47658787885417 0.364589599717079 0.5 -0.7 -1.17148395066988 -0.567992218506607 -0.887487841416573 1.98797276477312 0.283996109253304 0.6 0.8 0.3 0.45 -0.255488924044165 -1.19568816452669 0.950418797444293 -0.48031917720303 -0.459880063279497 -0.971266693646297 0.302171860245515 -0.0107918521516255 -0.327025822776531 0 -0.233477570588052 -0.311303427450736 -0.233477570588052 -0.596664902613911 -1.24521370980294 -0.596664902613911 0.856084425489525 -0.830142473201963 -0.207535618300491 -0.363187332025859 -0.259419522875614 -0.259419522875614 -1.03767809150245 0.57072295032635 0.415071236600982 -0.882026377777086 -0.596664902613911 -0.466955141176104 -0.337245379738298 -0.363187332025859 -1.478691280391 -0.830142473201963 -0.882026377777086 -0.622606854901472 0.726374664051718 -0.778258568626841 -1.27115566209051 -0.466955141176104 -0.700432711764157 -0.856084425489525 -0.233477570588052 -0.726374664051718 -0.466955141176104 -0.933910282352209 1.19332980522782 -1.1414459006527 -0.752316616339279 -1.06362004379002 -1.89376251699198 -0.233477570588052 -0.544780998038788 -0.0778258568626841 -0.311303427450736 -0.492897093463666 0 -0.648548807189034 -1.1414459006527 1.06362004379002 -0.18159366601293 0.0778258568626841 -0.103767809150245 1.19332980522782 0.0778258568626841 1.16738785294026 2.77578889476906 0.95985223463977 1.42680737581587 1.16738785294026 -1.78999470784173 -0.830142473201963 -1.32303956666563 0.466955141176104 -0.441013188888543 1.50463323267856 0.985794186927331 -0.57072295032635 0.103767809150245 2.6201371810437 -0.337245379738298 0 -1.29709761437807 -0.882026377777086 0.441013188888543 0.207535618300491 -0.155651713725368 -1.08956199607758 -1.01173613921489 0.648548807189034 -0.700432711764157 -0.622606854901472 -0.804200520914402 -0.444772892118624 1.88997931561671 -0.288063761859796 -0.358323215971941 -1.29979990107469 -0.698157101914371 0.816488814103247 1.17148395066988 -0.0118331712188876 0.816488814103247 -0.579825389725494 -0.461493677536618 0.863821498978797 1.1512859515204 0.127920661280044 -0.383761983840132 -1.68622689869149 0.151178963330961 -1.47690218023323 1.03499444126581 -2.33745935611717 0.52694590584109 0.75880210441117 -0.189700526102792 0.189700526102792 -0.575 -0.225 -0.375 -0.425 0.525 1.625 1.12415126579433 0.305126772144174 0.529957025303039 0.412188797457919 -0.250772205446426 0.942557599781396 0.475602458605291 0.769611251197653 NA 0.9855372475 0.4280970275 -0.0172041817471903
[+] Show/hide bicluster #276 motif PSSM #1. bicluster 276 motif PSSM #1 Mycobacterium tuberculosis H37Rv 16x4
POSITION A C G T
1 0.8 0.2 0 0
2 0.2 0.8 0 0
3 0.8 0 0.2 0
4 0.4 0.6 0 0
5 1 0 0 0
6 0.4 0 0.6 0
7 0.6 0.2 0 0.2
8 0.2 0.2 0 0.6
9 0.8 0 0 0.2
10 0.2 0 0 0.8
11 0.4 0.2 0.4 0
12 0 0 0.6 0.4
13 0.4 0 0 0.6
14 0 0 1 0
15 0.8 0.2 0 0
16 0.8 0.2 0 0 [+] Show/hide bicluster #276 motif PSSM #2. bicluster 276 motif PSSM #2 Mycobacterium tuberculosis H37Rv 13x4
POSITION A C G T
1 0 1 0 0
2 0.8 0 0 0.2
3 0 0.2 0.8 0
4 0 0 0.8 0.2
5 0 0 0 1
6 0.4 0 0 0.6
7 0 0 0.4 0.6
8 0.2 0.8 0 0
9 0.2 0 0 0.8
10 0 0.2 0.8 0
11 0.6 0 0 0.4
12 0 0 1 0
13 0 0.8 0 0.2 |