Bicluster 298 (zzz

GENES 2885:::Strain.1006...replicate.3 2885:::Strain.1006...replicate.4 2885:::Strain.9700665..replicate.2 2885:::Strain.9800608..replicate.1 2885:::Strain.9800608..replicate.4 2885:::Strain.9802826..replicate.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.1 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.3 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.2 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.2 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.3 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.5 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.5 4084:::High.iron.wt.vs.high.iron.ideR.KO.1a 4084:::High.iron.wt.vs.high.iron.ideR.KO.1b 4084:::High.iron.wt.vs.low.iron.wt.2a 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4 4099:::H37Rv.hypoxia.2hr.rep.5 4100:::H37Rv.0.2..Oxygen..2h..4 4101:::H37Rv.Day.0.rep.3 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.1 4107:::PBS.Tween.7H9 4107:::pH4.8vspH6.8..2h.B 4107:::pH5.2vspH6.8..10.5h. 4107:::pH5.2vspH6.8..2h. 4107:::pH5.6vspH6.8..11h. 4107:::pH5.6vspH6.8..2h. 4107:::pH5.6vspH6.8..5h. 4107:::Succinate.7H9.based.medium..2 4107:::UV.40J.vs.8h.2 4107:::WT.t.0h.WT.t.6h..2 4107:::X0.2ug.mL.Mtmvsctrl..4h. 4107:::X0.2ug.mL.Mtmvsctrl..6h. 4107:::X1.ug.mL..111891vsDMSO..6h 4107:::X100ug.mL.Cephalexin.Ctrl..6h 4107:::X10uM.ValinomycinvsDMSO..6h 4107:::X1ug.mL..241vsDMSO..6hA 4107:::X1uM.ValinomycinvsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X20mJ.UVvsctrl..6h. 4107:::X25J.UV.ctrl..2h. 4107:::X5ug.mL.OfloxvsEtOH..6h 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.4 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep1 4575:::Purified.Surfactant.Lipids.2hrs.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.3 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4615:::AA_30uM_1h_01 4615:::AA_30uM_1h_07 4615:::AA_30uM_24h_02 4615:::AA_30uM_24h_03 4615:::AA_30uM_2h_02 4615:::AA_30uM_2h_04 4615:::AA_30uM_2h_05 4615:::AA_30uM_30min_06 4615:::AA_30uM_30min_07 4615:::AA_30uM_30min_08 4615:::AA_30uM_30min_09 4615:::Acetate.3mM.10m_04 4615:::C2_ceramide_5uM_1h_01 4615:::CHP.AA.1h.1 4615:::CK_PA.Na.24h.1 4615:::CK.4h.for.AA.NA.0.03mM 4615:::CK.AA.2h 4615:::CK.MDG.2h.for.PA.NA 4615:::CK.OA.Na.24h.1 4615:::CK.PA.Na.2h.01 4615:::Glycerol_1._30M_01 4615:::L2A_30uM_10min_01 4615:::L2A_30uM_1h_02 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_30min_01 4615:::L2A_30uM_30min_02 4615:::L2A_30uM_30Min_06 4615:::MAPP_5uM_4h_01 4615:::MDGCy3.7H9Cy5.03 4615:::MTB1254_Pellicle_14D_01 4615:::MTB1254_SDS_90MIN_02 4615:::MTB1254_SDS_90MIN_04 4615:::MTB1254.0465.4._SDS_60MIN_01 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.0485.1._OA_30m_02 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.3219.1._01 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_01 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_01 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_02 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_01 4615:::MTB1254.Rv3524.2.compl._PA50.OA30_2h_02 4615:::MTB1254whiB4_SDS_90MIN_01 4615:::MTB1370_PA50_1h_01 4615:::MTB1370_PA50_1h_04 4615:::OA_50uM_1h_01 4615:::OA_50uM_1h_07 4615:::OA_50uM_1h_08 4615:::OA_50uM_24h_03 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h_08 4615:::OA_50uM_2h.1.5..BSA_30min_01 4615:::OA_50uM_30min_07 4615:::OA_50uM_30min_09 4615:::OA_50uM.0.5.BSA_1h_01 4615:::OA50um_10min.10mM_G_20min 4615:::PA_50uM_10.min_02 4615:::PA_50uM_10min_09 4615:::PA_50uM_1h_01 4615:::PA_50uM_1h_07 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_30.min_04 4615:::PA_50uM_30min_08 4615:::PA_50uM_30min_11 4615:::PA_50uM_3d_03 4615:::PA_50uM_3d_05 4615:::PA_50uM.0.5.BSA_1h_01 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.AA_30uM_2h_04 4615:::PA_50uM.OA_10uM_2h_01 4615:::PA_50uM.OA_30uM_24h_01 4615:::PA_50uM.OA_30uM_2h_03 4615:::PA_50uM.OA_30uM_2h_04 4615:::PA_50uM.OA_30uM_4h_05 4615:::Rv_OA30_30mim_01 4615:::Rv_Rv3524.1 4615:::Rv_TA_OA30_30mim_01 4615:::Rv_TA_OA30_30mim_03 4615:::Rv.MT106_100503_01 4615:::Rv.MT96_100503_02 4615:::Rv.p0485.2._300uM.PA_4h 4615:::Rv.pMV261Km._300uM.PA_10m 4615:::Rv3524.1_OA_10min 4615:::Starvation_1254_6h_06 4615:::Starvation_1254_6h_07 4615:::Starvation_1254_OA50_24h_01 4615:::Starvation_1254_OA50_24h_02 4615:::Starvation_1254_OA50_24h_04 4615:::TBD097 4615:::TBD1114 4615:::TBD1116 4615:::TBD1275 4615:::TBD1276 4615:::TBD1277 4615:::TBD664 4615:::TBD816 4615:::TBD817 4615:::TBD818 4615:::TBD819 4615:::TBE055 4615:::TBE056 4615:::TBE059 4615:::Test_361.3 4615:::Test_ceramide_5uM 4615:::Tet_50ng_30M_01 4615:::WM_1254_vs_1254whiB4_20day 4615:::WT_65.4_SDS_01 4615:::WT_WhiB4_PA_10min_01 4615:::X7H9Cy3.MDGCy5.01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.2 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.5 4815:::H37Rv.reaeration.for.1hrs.rep.5 4815:::H37Rv.reaeration.for.1hrs.rep.6 4815:::H37Rv.reaeration.for.24hrs.rep.6 4815:::H37Rv.reaeration.for.4hrs.rep.5 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection RV0120C -1.57762245436898 -0.45728187083159 0.823107367496862 1.07461239645424 -0.480145964373169 -2.05776841874215 1.04239481010019 0.591476512156399 -0.632983635816497 -0.985794186927332 -0.79901213045689 -1.04805487241748 1.15182268156772 1.33860473803817 1.23483692888792 0.425448017516006 0.819765692286939 -0.446201579346055 0.882026377777086 0.238665961045565 1.94045803110959 1.50463323267856 -0.0311303427450736 1.44237254718841 0.0311303427450736 0.79901213045689 1.19332980522782 -0.736751444966742 -1.06880843424753 -0.674490759476595 0.0311303427450736 -1.50463323267856 0.487405731300605 0.457865990009659 1.07820055711952 0.123082255378941 -0.930501850664792 -1.04546067718872 -0.741939835424255 0.944287063267233 0.282850963651475 -0.674490759476595 -1.84941014695195 0.843113449345744 NA -0.299773670878487 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.175 -1.675 -1.375 -0.525 0.425 1.20780903441158 1.30192402410599 -0.486260780087778 -0.23805556216821 -0.912546321644805 -0.539592607581276 -0.735808101247195 0.956550531621353 1.29992764553671 -0.318850177207118 -0.0490538734164797 -0.245269367082398 -0.416957924040077 -1.03013134174607 -1.83952025311799 -0.392430987331837 0.0245269367082397 0.539592607581276 -0.515065670873036 1.15276602528727 1.83952025311799 1.54519701261911 2.35458592399102 0.956550531621353 0.809388911371914 0.564119544289516 0.490538734164796 -2.2810051138663 0.147161620249439 -0.318850177207118 -0.318850177207118 -1.10371215187079 0.367904050623597 -0.907496658204873 0.392430987331837 -1.39803539236967 -2.42816673411574 -1.29992764553671 -0.147161620249439 -1.07918521516255 -1.00560440503783 0.686754227830715 -0.343377113915358 -0.637700354414235 -1.03013134174607 -0.490538734164797 -1.37350845566143 -1.66783169616031 -1.56972394932735 -1.59425088603559 -0.784861974663675 -1.69235863286855 -1.59425088603559 -0.809388911371914 NA -0.882969721496634 0.613173417705996 0 -0.196215493665919 -0.367904050623597 1.27540070882847 -0.809388911371914 -1.34898151895319 -0.686754227830715 0.564119544289516 0.122634683541199 -0.0490538734164797 -1.49614313920263 -1.54519701261911 -0.0735808101247195 0.858442784788394 NA -0.466011797456557 NA 0.981077468329593 -0.122634683541199 -0.833915848080154 -1.10371215187079 -1.54519701261911 -0.784861974663675 0.833915848080154 -1.07918521516255 -0.564119544289516 -0.760335037955435 -2.23195124044982 0.735808101247195 -2.01120881007567 -2.35458592399102 0.441484860748317 1.22634683541199 -0.564119544289516 0.0490538734164796 0.0490538734164796 1.74141250628503 1.96215493665919 1.15276602528727 0.637700354414235 1.03013134174607 0.588646480997756 -0.809388911371914 -0.735808101247195 0.981077468329593 0.833915848080154 0.441484860748317 1.07918521516255 0.318850177207118 0.147161620249439 0.564119544289516 0.588646480997756 0.416957924040077 0.932023594913113 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