Bicluster 302 (zzz

GENES 2867:::H37Ra..Sauton.s.media.replicate.1 2867:::H37Ra..Sauton.s.media.replicate.4 2885:::H37Rv..7H9.roll.replicate.2 2885:::H37Rv..7H9.roll.replicate.3 2885:::Strain.1006...replicate.1 2885:::Strain.1254...replicate.1 2885:::Strain.1843..replicate.1 2885:::Strain.3160...replicate.3 2885:::Strain.9700665..replicate.1 2885:::Strain.9800608..replicate.1 4055:::H37Rv.Vs.M.bovis.rep1 4055:::H37Rv.Vs.M.bovis.rep2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.3 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.7 4082:::Rv3676.null.Vs.H37Rv.wild.type.7 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.6 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.5 4099:::H37Rv.hypoxia.2hr.rep.1 4100:::H37Rv.0.2..Oxygen..2h..4 4101:::H37Rv.Day6.1 4101:::NRP.Day10..1 4101:::NRP.Day14..7 4101:::NRP.Day6..1 4107:::DIPED.50ug.mL.vs.DMSO.12h.1 4107:::EMB.10ug.mL.vs.DMSO.12h.1 4107:::pH4.8vspH6.8..2h. 4107:::pH4.8vspH6.8..4h.A 4107:::pH4.8vspH6.8..4h.B 4107:::pH4.8vspH6.8..5.5h. 4107:::pH4.8vspH6.8..7h. 4107:::pH5.6vspH6.8..4h. 4107:::WT.t.0h.WT.t.6h..1 4107:::X0.12mg.mL.BZA.pH5.6..2h. 4107:::X0.12mg.mL.BZA.pH5.6..4h..2 4107:::X0.12mg.mL.Nam.pH5.6..2h..1 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZAvspH5.6..11h. 4107:::X0.1mM.GSNOvsDMSO..6h 4107:::X0.1mMGSNO.5ug.mLKCNvsDMSO.6h 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.2ug.mL.PA824.DMSO..6h..1 4107:::X0.2ug.mL.PA824.DMSO..6h..2 4107:::X0.32ug.mL.CervsEtOH..6hA 4107:::X0.4ug.mL.PA824.DMSO..6h..3 4107:::X0.5ug.mL..111895vsDMSO.6h 4107:::X0.5ug.mL..121940vsDMSO.6h 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..16h. 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X1.2mg.mL.PZAvspH5.6..4h.B 4107:::X1.2mg.mL.PZAvspH5.6..6h.A 4107:::X100uM.DipyridylvsCtrl..6hA 4107:::X10ug.mL.Nvb.DMSO..6h..1 4107:::X10ug.mL.Nvb.DMSO..6h..3 4107:::X10ug.mL.PA.1vsDMSO..6hB 4107:::X10ug.mL.TriclosanvsDMSO..6hB 4107:::X20ug.mL.KCN.DMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X2mM.DTNBvsDMSO 4107:::X40ug.mL.5CL.pH5.6..2h..1 4107:::X40ug.mLProcept6778vsDMSO.6h 4107:::X50ug.mLAntimycinAvsDMSO..6h 4107:::X80ug.mL.5CL.pH5.6..2h. 4363:::H37Rv.hypoxia.1.day.rep.9 4363:::H37Rv.hypoxia.4hr.rep.1 4363:::H37Rv.hypoxia.4hr.rep.2 4363:::H37Rv.hypoxia.4hr.rep.3 4364:::H37dosR.mutant.hypoxia.4hr.rep.2 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.2 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.4 4570:::MTB.strain.TB294.Ctrl.vs.SigA.overexpression.rep1 4575:::Extracted.Lung.Surfactant.2hrs.rep.1 4575:::Extracted.Lung.Surfactant.30min.rep.2 4575:::Extracted.Lung.Surfactant.30min.rep.4 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep2 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4575:::Purified.Surfactant.Lipids.2hrs.rep.2 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Purified.Surfactant.Lipids.30min.rep.2 4575:::Whole.Lung.Surfactant.2hrs.rep.3 4575:::Whole.Lung.Surfactant.30min.rep.3 4575:::Whole.Lung.Surfactant.30min.rep.5 4581:::H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.2 4615:::AA_30uM_10.min_04 4615:::AA_30uM_10.min_05 4615:::AA_30uM_10.min_06 4615:::AA_30uM_10.min_07 4615:::AA_30uM_30min_03 4615:::Acetate.3mM.30m.07 4615:::Acetate.3mM.30m.08 4615:::ETYA_10uM.AA_1h_02 4615:::ETYA_30uM_10min.03 4615:::ETYA_3uM.AA_1h_02 4615:::Glycerol_1._10M_01 4615:::L2A_30uM_10min_05 4615:::LAA_50uM_30min_01 4615:::MDG_1254.pMV261_02 4615:::MDG_1254.pMV261.3524_01 4615:::MDG_1254.pMV261.3524_02 4615:::MDG_1254.pMV261.3524_03 4615:::MDG_1254.pMV261.3524_04 4615:::MDGCy3.7H9Cy5.01 4615:::MT1254.whiB4_CK_01 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.0485.1._LA_10m_01 4615:::MTB1254.3524.1._OA_10min_01 4615:::MTB1254.3524.1._OA_10min_02 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._OA_30MIN_04 4615:::MTB1254.whiB4_SDS_90MIN_01 4615:::MTB1254TA1_OA.30min_02 4615:::OA_50uM_1h_04 4615:::OA_50uM_30min_06 4615:::OA_50uM_4h_05 4615:::PA_10uM_10.min_01 4615:::PA_10uM_10min_02 4615:::PA_300uM_2h_T0_01 4615:::PA_50uM_10min_06 4615:::PA_50uM_1h_02 4615:::PA_50uM_24h_02 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_30.min_05 4615:::PA_50uM_30.min_06 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_50uM.AA_30uM_2h_02 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.OA_10uM_4h_01 4615:::PA_50uM.OA_30uM_2h_01 4615:::Rv.MT96_100503_01 4615:::Rv.MT96_100503_02 4615:::Rv.MT96_100603_01 4615:::Starvation_OA50_6h_01 4615:::TBD044 4615:::TBD092 4615:::TBD426 4615:::Test_261B4.1 4615:::Test_361.1 4615:::WT_WhiB4_OA_10min_01 4615:::X2.BA_100uM_30min_01 4615:::X2.BA_500uM_30min_01 4615:::X2.BA.OA.1 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.4 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.H37Rv.rep.2 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.3 4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4731:::X5ug.ml.Streptomycin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.4 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.3 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.24hrs.rep.5 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1 RV0464C -1.41643059490085 -0.634021313907999 0.674490759476595 0.377714825306893 1.5648185619857 0.836368541750978 0.323755564548765 1.10616484554162 0.620531498718468 -1.13314447592068 -0.0421556724672875 -1.3068258464859 0.599547341756974 -1.34898151895319 -1.28902678477749 -1.75367597463915 -2.56306488601106 -1.73868729109522 -1.1691173164261 -2.38320068348397 -0.0599547341756973 -1.51385703793636 0.509615240493428 0.524603924037352 0.524603924037352 0.854354962003687 0.44966050631773 0.959275746811158 NA 0.5545812911252 0.779411544284066 1.31900415186534 1.07918521516255 0.389705772142033 0.569569974669125 0.959275746811158 NA NA 0.814040571782098 -0.814040571782098 -0.473966479632202 -0.911473999292696 0.218753759830247 0.765638159405865 0.109376879915124 0.255212719801955 -0.218753759830247 0.0627433264629391 -1.50583983511054 -0.425 0.385423291129483 0.578134936694225 -0.693761924033069 0.501050278468328 0.369882029390391 0.108788832173644 -1.45777035112683 NA -0.239335430782018 0.522186394433493 0.19581989791256 0.0217577664347289 -3.00257176799259 -1.32722375251846 NA -1.04437278886699 -0.413397562259849 -0.826795124519697 -0.174062131477831 0.718006292346053 -0.239335430782018 0.870310657389155 -0.805037358084968 -0.913826190258613 0.848552890954426 -3.52475816242608 0.870310657389155 0.39163979582512 -1.43601258469211 -0.0435155328694578 -0.456913095129306 -0.826795124519697 -0.739764058780782 1.04437278886699 -1.00085725599753 -1.17491938747536 -0.957341723128071 0.239335430782018 -4.56913095129306 0.957341723128071 0.718006292346053 -1.283708219649 -0.369882029390391 -0.58745969373768 -1.15316162104063 0.674490759476595 1.0765910199338 0.95985223463977 -0.298332451306956 0.756247215170728 0.8 0 -0.45 0.4 -0.0749999999999998 -0.0293256851946346 0.166178882769596 -0.0684265987874807 0.752692586662287 0.733142129865864 -0.57673847549448 0.713591673069441 -1.20235309298002 -0.635389845883749 0.0293256851946345 -0.283481623548134 -0.928646697830095 1.0995123339413 -1.57997150507531 0.401824282241376 0.774946830036939 0.660139892253689 0.602736423362064 0 -0.554045980998632 1.27671465186641 1.13218091769286 1.20444778477963 0.939469272128115 0.794935537954559 0 0.457690158216261 0 0.554045980998632 -0.168622689869149 0.819024493650151 1.37307047464878 -0.529957025303039 -0.289067468347112 -0.770846582258966 -0.120444778477963 -0.867202405041337 1.18035882908404 0 0.554045980998632 0.794935537954559 0.433601202520668 0.433601202520668 -0.192711645564742 0.698579715172188 -0.794935537954559 -0.216800601260334 1.25262569617082 2.3125397467769 0.0481779113911854 -0.457690158216261 -0.433601202520668 -1.18035882908404 0.62631284808541 1.46942629743115 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