GENES 2867:::H37Ra..7H9.shake.replicate.4 2867:::H37Ra..Sauton.s.media.replicate.3 2867:::H37Rv..7H9.shake.replicate.2 2885:::H37Ra..7H9.roll.replicate.1 2885:::H37Rv..7H9.roll.replicate.1 2885:::H37Rv..7H9.roll.replicate.2 2885:::H37Rv..7H9.roll.replicate.3 2885:::H37Rv..7H9.roll.replicate.4 2885:::Strain.3160...replicate.3 2885:::Strain.9800608..replicate.4 2885:::Strain.9802501..replicate.4 2885:::Strain.CDC1551..replicate.2 2885:::Strain.H37Ra..replicate.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.6 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.3 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4084:::High.iron.wt.vs.high.iron.ideR.Complement.1b 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.4 4101:::H37Rv.Day.0.rep.2 4107:::DIPED..100ug.mL..DMSO..12h..1 4107:::pH4.8vspH6.8..4h.A 4107:::pH4.8vspH6.8..4h.B 4107:::pH4.8vspH6.8..6h. 4107:::pH5.2vspH6.8..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.12mg.mL.PZA.pH5.6..4h..2 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.5ug.mL..111891vsDMSO.6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X0.5uMValinomycin.70mMKClvsDMSO.6h 4107:::X0.5uMValinomycinvsDMSO.6h 4107:::X10ug.mL..59.DMSO..6h 4107:::X10ug.mL.clofazimine.DMSO..6h 4107:::X10ug.mL.EconazolevsEtOH..6hA 4107:::X10ug.mL.TRZ.DMSO..6h..1 4107:::X10uM.ValinomycinvsDMSO..6h 4107:::X12ug.mLEthionamidevsEtOH.6hA 4107:::X1ug.mL..124196vsDMSO..6hA 4107:::X2.5mM.Dinitrophenol.DMSO..6h 4107:::X20ug.mL.chlorprmz.DMSO..6h..2 4107:::X20ug.mL.ethambutol.DMSO 4107:::X40ug.mL.5CL.pH5.6..4h..2 4107:::X50ug.mLAntimycinAvsDMSO..6h 4363:::H37Rv.hypoxia.1.day.rep.4 4363:::H37Rv.hypoxia.1.day.rep.5 4363:::H37Rv.hypoxia.4hr.rep.1 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.5 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.3 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.5 4575:::Extracted.Lung.Surfactant.30min.rep.1 4575:::Extracted.Lung.Surfactant.30min.rep.4 4575:::Purified.Human.SP.A.Coated.2hrs.rep1 4575:::Purified.Human.SP.A.Coated.2hrs.rep2 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep2 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.3 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.3 4615:::AA_10uM_10.min_01 4615:::AA_30uM_10min_03 4615:::AA_30uM_24h_03 4615:::AA_30uM_30min_01 4615:::AA_30uM_30min_07 4615:::AA_30uM_4h_08 4615:::AA_60uM_24h_01 4615:::C2_ceramide_5uM_1h_01 4615:::CK.4h.for.AA.NA.0.03mM 4615:::CK.AA.Na.2h 4615:::CK.for.OA.4h.1 4615:::CK.LA.2h.4 4615:::CK.OA.Na.24h.1 4615:::CK.PA.NA.101801.2 4615:::CK.PA.Na.2h.01 4615:::ETYA_10uM.AA_1h_02 4615:::ETYA_30uM_10min.02 4615:::L2A_30uM_10min_06 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_30min_01 4615:::L2A_30uM_30min_02 4615:::L2A_30uM_30Min_06 4615:::L2A_30uM_4h_08 4615:::MAPP_5uM_4h_01 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261.3524_03 4615:::MDG_1254.pMV261_01 4615:::MDG_1254.pMV261_02 4615:::MDG_1254.pMV261.3524_01 4615:::MTB1254_Bottom_14D_02 4615:::MTB1254_Bottom_14D_03 4615:::MTB1254_Bottom_14D_04 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254_Pellicle_21D_03 4615:::MTB1254_Pellicle_42D_04 4615:::MTB1254_Pellicle_56D_02 4615:::MTB1254_SDS_90MIN_04 4615:::MTB1254.0485.1._OA_10m_01 4615:::MTB1254.0485.1._PA_30m_03 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.3524.1._OA_10min_01 4615:::MTB1254.3524.1._OA_10min_03 4615:::MTB1254.3524.1._PA_12h_04 4615:::MTB1254.B4.1._PA_30MIN_04 4615:::MTB1254.B4.1._PA_4h_01 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_02 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_30MIN_04 4615:::MTB1254.B4.1.Compl._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_4h_03 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_01 4615:::MTB1254TA1_OA.30min_03 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::MTB1370_PA50_1h_01 4615:::MTB1370_PA50_1h_04 4615:::MTB889_PA50_1h_01 4615:::MTB889_PA50_1h_02 4615:::OA_50uM_1h_01 4615:::OA_50uM_24h_05 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h_07 4615:::OA_50uM_2h_09 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::OA_50uM_30min_02 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_2h_01 4615:::PA_50uM_30min_03 4615:::PA_50uM_3d_03 4615:::PA_50uM_3d_06 4615:::PA_50uM.AA_30uM_2h_01 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_30uM_24h_01 4615:::PA_50uM.OA_30uM_24h_02 4615:::Rv_OA30_30mim_01 4615:::Rv_TA_OA30_30mim_03 4615:::Rv.MT106_100503_01 4615:::Rv.MT106_100503_02 4615:::Rv.MT106_100603_01 4615:::Rv.MT71_100503_01 4615:::Rv.MT71_100503_02 4615:::Rv.MT71_100703_01 4615:::Rv.MT71_100803_01 4615:::Rv.MT90_100503_02 4615:::Rv.MT90_100603_01 4615:::Rv.MT96_100503_01 4615:::Rv.MT96_100503_02 4615:::Rv.MT96_100703_01 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Rv.p0485.1._OK 4615:::Rv.p0485.2._300uM.PA_4h 4615:::Starvation_1254_OA50_6h_01 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50_6h_02 4615:::Starvation_1254_PA50_6h_03 4615:::Starvation_1254_PA50.OA30_24h_04 4615:::Starvation_OA50_6h_03 4615:::Starvation_OA50_6h_04 4615:::Strain95.OA.10M.01 4615:::TBD092 4615:::TBD097 4615:::TBD099 4615:::TBD1111 4615:::TBD1137 4615:::TBD1266 4615:::TBD1276 4615:::TBD426 4615:::TBD664 4615:::TBD817 4615:::TBE058 4615:::TBE059 4615:::TBE734 4615:::Test.4 4615:::Tet_50ng_30M_01 4615:::Tet_5ug_30M_01 4615:::WM_1254_vs_1254whiB4_20day 4615:::WM_T0_01 4615:::WT_65.4_SDS_01 4615:::WT_85.1_OA_10min_02 4615:::WT_85.1_PA_10min_01 4615:::WT_WhiB4_OA_10min_01 4615:::WT_WhiB4_PA_10min_01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.3 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages RV1334 -0.2 0.45 -0.9 -0.31740741622428 1.03157410272891 1.13737657480367 0.5290123603738 0.74061730452332 -0.60836421442987 0.07935185405607 -0.15870370811214 -0.39675927028035 1.16382719282236 1.47745594932968 -0.674490759476595 -2.98703050625349 0.642372151882472 0.0642372151882472 0.44966050631773 0.256948860752989 0.321186075941236 0.0321186075941236 -0.642372151882472 -2.1840653164004 -0.995676835417831 1.025 -3.23045574275632 0.319495622909966 0.603491732163269 0.993986382386561 1.13598443701321 -0.816488814103247 0.144533734173556 1.11936764338669 0.314762354422411 -0.472143531633617 -0.0674490759476595 -0.562075632897163 0.944287063267233 -0.809388911371914 -0.854354962003687 NA -0.157381177211206 0.876837987319574 -2.58554791132695 -1.07918521516255 0.921804037951346 1.10166824047844 NA 1.75367597463915 -2.8328611898017 NA 0.966770088583119 0.652007734160709 1.01173613921489 0.337245379738298 -0.51710958226539 -0.921804037951347 -1.25530224680366 -1.25530224680366 -0.10304719936448 -0.533971851252305 -0.674490759476595 -0.359728405054184 -0.134898151895319 NA -0.0750000000000001 0.425 -0.944287063267233 -0.124905696199369 -3.13357165340168 -1.9813166059625 0.716646431943882 0.941476685102747 0.632335087009308 0.548023742074733 -0.857165340168173 -0.519919960429876 -0.744750213588741 NA 0.697749061527512 -0.465166041018342 0.814040571782098 -0.55819924922201 -0.534940947171093 1.02336529024035 0.325616228712839 0.325616228712839 0.860557175883932 0.604715853323844 0.814040571782098 0.209324718458254 0.674490759476595 0.302357926661922 -0.255841322560088 0 0.139549812305502 1.04662359229127 -1.0931401963931 -0.744265665629346 -0.534940947171093 -1.00010698818943 NA 0.627974155374761 0.302357926661922 0.372132832814673 1.25594831074952 0.790782269731181 0.534940947171093 0.441907738967424 0.0930332082036683 0.372132832814673 0.279099624611005 0.232583020509171 -1.32572321690227 -0.418649436916507 1.00010698818943 -0.767523967680264 -1.88392246612428 -1.16291510254585 -1.30246491485136 -0.465166041018342 0.790782269731181 -0.372132832814673 0.232583020509171 -0.651232457425678 -1.48853133125869 -0.581457551272927 -0.860557175883932 -1.83740586202245 -1.30246491485136 -1.53504793536053 0.0930332082036683 -1.69785604971695 -1.25594831074952 -2.32583020509171 -1.81414755997153 -1.0931401963931 -2.74447964200822 0.39539113486559 -1.7676309558697 -1.65133944561511 -1.58156453946236 -2.48863831944813 -3.23290398507747 0.744265665629346 0.465166041018342 -1.65133944561511 -0.55819924922201 -0.488424343069259 1.11639849844402 1.04662359229127 -0.418649436916507 -1.58156453946236 -1.27920661280044 -2.74447964200822 -0.976848686138517 NA 0.325616228712839 -0.627974155374761 0.441907738967424 0.16280811435642 0.674490759476595 -3.02357926661922 -2.20953869483712 0.604715853323844 0.604715853323844 -0.232583020509171 1.27920661280044 1.13965680049494 1.55830623741144 1.44201472715686 1.30246491485136 0.627974155374761 0.465166041018342 0.930332082036683 2.20953869483712 0.604715853323844 0.372132832814673 0.604715853323844 0.441907738967424 -2.06998888253162 -1.34898151895319 -2.20953869483712 -1.86066416407337 -1.02336529024035 0.581457551272927 0 1.0931401963931 0.0232583020509171 0.790782269731181 -0.16280811435642 0.790782269731181 0.907073779985766 0.534940947171093 0.465166041018342 1.02336529024035 1.37223982100411 1.16291510254585 0.744265665629346 0.581457551272927 -0.837298873833015 1.41875642510594 0.604715853323844 0.581457551272927 0.116291510254585 0.441907738967424 1.32572321690227 0.511682645120176 0.0465166041018342 1.00010698818943 1.13965680049494 0.351066911694785 -0.870756513258719 -2.02347227842979 -1.48784726355131 -0.578134936694225 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