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[+] Show/hide bicluster #317 rows and columns.
bicluster 317
Mycobacterium tuberculosis H37Rv
13x241
[+] Show/hide bicluster #317 rows (genes).
bicluster 317 genes
Mycobacterium tuberculosis H37Rv
13
[+] Show/hide bicluster #317 rows (short gene names).
bicluster 317 short names
Mycobacterium tuberculosis H37Rv
13
short_name
[+] Show/hide bicluster #317 rows (long gene names).
bicluster 317 long names
Mycobacterium tuberculosis H37Rv
13
long_name
[+] Show/hide bicluster #317 rows (NCBI RefSeq gene IDs).
bicluster 317 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
26
[+] Show/hide bicluster #317 gene upstream sequences.
bicluster 317 upstream sequences
Mycobacterium tuberculosis H37Rv
13
upstream
[+] Show/hide bicluster #317 columns (arrays; conditions).
bicluster 317 arrays
Mycobacterium tuberculosis H37Rv
241
[+] Show/hide bicluster #317 ratios.
bicluster 317 ratios
Mycobacterium tuberculosis H37Rv
13x241
GENES 2867:::H37Ra..7H9.shake.replicate.1 2867:::H37Ra..Sauton.s.media.replicate.4 2867:::H37Rv..7H9.shake.replicate.1 2867:::H37Rv..7H9.shake.replicate.3 2885:::H37Ra..7H9.roll.replicate.1 2885:::H37Ra..7H9.roll.replicate.2 2885:::H37Ra..7H9.roll.replicate.3 2885:::Strain.3160..replicate.2 2885:::Strain.9802501..replicate.2 2885:::Strain.9802826..replicate.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.1 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.6 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.5 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.6 4084:::High.iron.wt.vs.low.iron.wt.1b 4084:::High.iron.wt.vs.low.iron.wt.2a 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.6 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.3 4100:::H37Rv.0.2..Oxygen..2h..4 4101:::H37Rv.Day14.2 4101:::H37Rv.Day8.2 4101:::H37Rv.Day8.3 4107:::DIPED..100ug.mL..DMSO..12h..3 4107:::H2O2.4mM.vs.ctrl.8h.1 4107:::pH5.2vspH6.8..10.5h. 4107:::pH5.2vspH6.8..16h. 4107:::pH5.6vspH6.8..16h. 4107:::pH5.6vspH6.8..7h. 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.NamvspH5.6..7h. 4107:::X0.12mg.mL.PZAvspH5.6..6h. 4107:::X0.1mg.mLTriclosanvsEtOH.6hB 4107:::X0.1mg.mLTriclosanvsEtOH.6hC 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4107:::X0.1ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2ug.mL.Mtmvsctrl..2h.A 4107:::X0.2ug.mL.Mtmvsctrl..4h.B 4107:::X0.2ug.mL.Mtmvsctrl..6h. 4107:::X0.2ug.mL.PA824.DMSO..6h..1 4107:::X0.2ug.mL.PA824.DMSO..6h..2 4107:::X0.5ug.mL..121940vsDMSO.6h 4107:::X0.5ug.mL..121940vsDMSO.6hA 4107:::X0.5ug.mL..124196vsDMSO..6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X0.5uMValinomycinvsDMSO.6h 4107:::X100ug.mLCephalexinvsEtOH.6h 4107:::X100uM.Dipyridylvsctrl..6h 4107:::X10ug.mL..109vsDMSO..6h 4107:::X10ug.mL..109vsDMSO..6hA 4107:::X10ug.mL..59vsDMSO..6hA 4107:::X10ug.mL.TetvsEtOH..6hA 4107:::X10ug.mLmnd.Dubos.vsDMSO.6h 4107:::X13ug.mL.clfzine.DMSO..6h..2 4107:::X1ug.mL..111891vsDMSO..6h 4107:::X20ug.mL.Procept6776vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6hB 4107:::X250uM.DeferroxaminevsDMSO..6h 4107:::X25J.UV.ctrl..2h. 4107:::X25J.UVvs.ctrl..6h. 4107:::X25ug.mL.CPZvsDMSO..6h.A 4107:::X2ug.mL.PA824.DMSO..6h..2 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X30ug.mLProcept6776vsDMSO.6h 4107:::X30ug.mLProcept6776vsDMSO.6hA 4107:::X40ug.mLProcept6778vsDMSO.6h 4107:::X4mM.H2O2vsctrl..2h. 4107:::X4mM.H2O2vsctrl..4h. 4107:::X5ug.mL.KCN.DMSO..6h..2 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X9ug.mLAscidideminNpvsDMSO.6h 4107:::X9ug.mLNaturalproductvsDMSO.6h 4363:::H37Rv.hypoxia.4hr.rep.2 4363:::H37Rv.hypoxia.4hr.rep.5 4364:::H37dosR.mutant.hypoxia.4.day.rep.1 4364:::H37dosR.mutant.hypoxia.8hr.rep.3 4365:::H37Rv.diamide.1h.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.2 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.3 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4575:::Extracted.Lung.Surfactant.2hrs.rep.1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep1 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Whole.Lung.Surfactant.2hrs.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.3 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.1 4615:::AA_30uM_10min_03 4615:::AA_30uM_30min_02 4615:::AA_3uM_10min_02 4615:::Acetate.3mM.2h.01 4615:::Acetate.3mM.30m.02 4615:::CHP.AA.30m.1 4615:::CK_PA.Na.24h.1 4615:::ETYA_30uM_10min.01 4615:::ETYA_30uM_10min.06 4615:::L2A_30uM_10min_01 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_30min_05 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_02 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261_04 4615:::MDA_1254.pMV261.3524_02 4615:::MDGCy3.7H9Cy5.01 4615:::MTB1254_SDS_90MIN_01 4615:::MTB1254.0465.4._SDS_60MIN_01 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.0485.1._PA_12h_04 4615:::MTB1254.0485.1._PA_30m_03 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_01 4615:::OA_50uM_1h_01 4615:::OA_50uM_24h_03 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h..1.5.BSA.10mMGlu._30.min_01 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::OA_50uM_30min_08 4615:::OA_50uM_4h_01 4615:::OA_50uM_4h_08 4615:::OA_50uM_4h_09 4615:::PA_50uM_12h_03 4615:::PA_50uM_12h_06 4615:::PA_50uM_2h_01 4615:::PA_50uM_30.min_07 4615:::PA_50uM_30min_09 4615:::PA_50uM_8h_04 4615:::PA_50uM_8h_05 4615:::PA_50uM.AA_30uM_2h_04 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_50uM.OA_10uM_30min_01 4615:::PA_50uM.OA_10uM_30min_03 4615:::Rv.MT71_100603_01 4615:::Rv.MT71_100803_01 4615:::Rv.p0485.2._300uM.PA_4h 4615:::SDS_3h_01 4615:::Spe_100uM_30M_01 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::Starvation_OA50_24h_01 4615:::TBD099 4615:::TBD1276 4615:::TBD662 4615:::TBE057 4615:::TBE734 4615:::TBF466 4615:::Tet_500ng_30M_01 4615:::WM_1254_20d_01 4615:::WM_1254.whiB4._20d_01 4615:::WT_65.4_SDS_01 4615:::WT_85.1_OA_10min_02 4615:::WT_WhiB4_PA_10min_01 4615:::X2.BA.1 4615:::X7H9MTB1254.0465.4._SDS_90MIN_01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.2 4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.3 4815:::H37Rv.reaeration.for.12hrs.rep.2 4815:::H37Rv.reaeration.for.24hrs.rep.1 4815:::H37Rv.reaeration.for.4hrs.rep.5 4815:::H37Rv.reaeration.for.6hrs.rep.4 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.3 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.3 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.2.hr.after.macrophage.infection Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.24hrs
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RV2754C NA NA NA NA NA NA NA NA NA NA -2.66049132904657 0 -0.89932101263546 0.674490759476595 1.19909468351395 0.382819079702932 0.437507519660494 -2.18753759830247 -1.07553931916538 0 -1.34898151895319 -0.893244519306842 0.838556079349281 -2.35160291817516 -1.73180059865612 -0.51042543960391 0.692720239462449 0.692720239462449 1.1484572391088 NA 0.820326599363427 0.729179199434157 -0.273442199787809 -0.638031799504887 0.875015039320988 0.273442199787809 NA NA NA NA NA NA NA -1.15 -0.95 -0.674490759476595 0.532492704849943 -0.532492704849944 1.70397665551982 0.283996109253303 -0.106498540969989 0.674490759476595 0 NA NA NA 1.15626987338845 0.224830253158865 -0.546016329100101 0.867202405041337 1.38110012654731 0.931439620229584 -0.289067468347112 NA NA 0.192711645564741 0.963558227823708 -0.481779113911854 -2.28042113918277 0.770846582258966 0.867202405041337 1.47745594932968 1.0920326582002 0.642372151882472 -0.385423291129483 0.224830253158865 0.0963558227823707 0.224830253158865 0.192711645564741 0.192711645564741 -1.67016759489443 0.513897721505977 -0.128474430376494 -1.60593037970618 0.417541898723607 -0.256948860752989 0.256948860752989 -1.99135367083566 -2.28042113918277 -0.0321186075941236 0.385423291129483 0.578134936694224 0.674490759476595 0.128474430376494 0.353304683535359 NA -3.62940265813597 0.578134936694224 -1.18838848098257 -0.610253544288348 -1.18838848098257 0.867202405041337 0.44966050631773 -1.86287924045917 -0.0642372151882472 -2.11982810121216 -0.706609367070719 0.716646431943882 -0.453173479023337 -0.337245379738298 -0.0168622689869149 0.374717088598108 -0.45 NA NA NA NA NA NA NA NA -0.674490759476595 0.0858442784788393 -0.895233189850754 -3.44603460750769 0.331113645561238 0.115156958935028 -1.00351064214811 0.806098712545199 0.148058947202179 NA -0.424679367077856 -0.499622784797478 -0.724453037956343 NA 0.44966050631773 -0.174867974679117 2.17335911386903 3.69720860750134 NA NA 1.17411354427407 NA 0.749434177196217 0.374717088598108 0.374717088598108 0.124905696199369 0.274792531638613 2.37320822778802 -1.7236986075513 -0.849358734155712 -0.849358734155712 -0.799396455675965 -0.874339873395586 -0.274792531638613 -0.399698227837982 -0.0749434177196217 0.274792531638613 0.974264430355082 2.14837797462916 0.499622784797478 NA 0.999245569594956 2.57305734170701 2.49811392398739 0.874339873395586 -0.199849113918991 NA 0.199849113918991 -2.84784987334562 0 0.224830253158865 0.249811392398739 -0.199849113918991 -1.42392493667281 0.499622784797478 0.674490759476595 2.52309506322726 0.474641645557604 0.499622784797478 0 -1.7236986075513 -0.699471898716469 -0.599547341756974 1.67373632907155 0.749434177196217 0.0749434177196217 -0.424679367077856 -0.674490759476595 0.0499622784797478 -0.249811392398739 4.32173708849818 3.22256696194373 0.0749434177196217 0.124905696199369 0.474641645557604 NA -1.47388721515256 NA -0.0890836852138899 -0.190893611172621 -1.74349498204327 -0.101809925958731 -1.70531625980875 0.809388911371914 -0.573317145555106 0.303520841764468 -1.41643059490085 -0.303520841764468 0.607041683528935 0.52307446653287 0.963558227823707 -0.41295352621016 -2.0729761873822 2.60514320862061 -0.105195806523873 0.25 -1.95923506324154 -0.4 -0.289067468347112 -0.578134936694224 0.122634683541199 -1.32854240502966 1.67600734172972 1.45117708857086 0.838003670864861 0.878881898711927 1.36942063287672 1.24678594933552 0.694929873400128 NA NA NA NA NA NA 0.125 1.19436110218113 -0.0385 0 0
[+] Show/hide bicluster #317 motif PSSM #1. bicluster 317 motif PSSM #1 Mycobacterium tuberculosis H37Rv 6x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 0 0 0 1
4 0 0 0 1
5 0 0 1 0
6 0 0 0 1 [+] Show/hide bicluster #317 motif PSSM #2. bicluster 317 motif PSSM #2 Mycobacterium tuberculosis H37Rv 9x4
POSITION A C G T
1 0.142857 0 0 0.857143
2 0 1 0 0
3 1 0 0 0
4 0 0 0.857143 0.142857
5 0 0.714286 0 0.285714
6 1 0 0 0
7 0.142857 0.714286 0.142857 0
8 0.142857 0.857143 0 0
9 0 0 1 0 |