Bicluster 325 (zzz

GENES 2867:::H37Rv..7H9.shake.replicate.2 2867:::H37Rv..Youman.media.replicate.1 2885:::H37Rv..7H9.roll.replicate.2 2885:::Strain.9802501..replicate.2 2885:::Strain.9802501..replicate.3 2885:::Strain.9802501..replicate.4 2885:::Strain.M3061a..replicate.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.2 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3a 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.1 4107:::EMB.10ug.mL.vs.DMSO.12h.2 4107:::Rif.0.5ug.mL.vsDMSO.2.5hA 4107:::UV.40J.vs.8h.2 4107:::X0.12mg.mL.BZA.pH5.6..4h..1 4107:::X0.12mg.mL.BZA.pH5.6..4h..2 4107:::X0.12mg.mL.BZAvspH5.6..5h. 4107:::X0.12mg.mL.Nam.pH5.6..2h..1 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.12mg.mL.PZAvspH5.6..4h.A 4107:::X0.12mg.mL.PZAvspH5.6..5.5h. 4107:::X0.12mg.mL.PZAvspH5.6..6h.A 4107:::X0.15mg.mL.TricvsEtOH..6h 4107:::X0.1mg.mLTriclosanvsEtOH.6hB 4107:::X0.1mM.GSNO.DMSO..6h 4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA 4107:::X0.1ug.mL.RifpvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X1.2mg.mL.NamvspH5.6..10.5h. 4107:::X100ug.mL.Ceph.DMSO..6h 4107:::X100ug.mL.Cphx.DMSO..6h 4107:::X100ug.mL.TriclosanvsEtOH..6h 4107:::X10ug.mL..59.DMSO..6h 4107:::X10ug.mL.ChlorprovsEtOH..6h 4107:::X10ug.mL.TriclosanvsDMSO..6hC 4107:::X10ug.mL.TRZ.DMSO..6h..2 4107:::X10ug.mLmdn.0.1mMGSNO.DMSO..2 4107:::X10ug.mLMethoxatinvsDMSO.6h 4107:::X1ug.mL..111895vsDMSO..6hA 4107:::X20ug.mL.Cephalexin.Ctrl..6h..2 4107:::X20ug.mL.CPZvsDMSO..6h.A 4107:::X20ug.mL.Prcp.6776.DMSO..6h..1 4107:::X24ug.mL.cltrmazole.DMS..6h..1 4107:::X2mM.ZnSO4.DMSO..6h 4107:::X2ug.mL.PA824.DMSO..6h..1 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X30ug.mLProcept6776vsDMSO.6hA 4107:::X40ug.mL.EtavsEtOH..6h 4107:::X4mM.H2O2.ctrl..2h...2 4107:::X4mM.H2O2vsctrl..1h. 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X50ug.mL.TriclosanvsEtOH..6h 4107:::X50ug.mL.VerapamilvsDMSO..6h 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.1.day.rep.5 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.4.day.rep.4 4363:::H37Rv.hypoxia.4hr.rep.2 4363:::H37Rv.hypoxia.4hr.rep.7 4363:::H37Rv.hypoxia.7.day.rep.6 4365:::H37Rv.diamide.1h.rep.6 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4570:::MTB.strain.TB294.Ctrl.vs.SigA.overexpression.rep2 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs..DS..rep.3 4615:::AA_10uM_10min_01 4615:::AA_30uM_10.min_04 4615:::AA_30uM_10.min_06 4615:::AA_30uM_1h_07 4615:::AA_30uM_1h_08 4615:::AA_30uM_24.AA_30uM_1h_01 4615:::AA_30uM_2h_04 4615:::AA_30uM_2h_07 4615:::AA_30uM_2h_08 4615:::AA_30uM_4h_08 4615:::AA_30uM_4h_09 4615:::aceatate.induction.1 4615:::Acetate.3mM.10m.03 4615:::Acetate.3mM.10m.06 4615:::Acetate.3mM.2h.03 4615:::Acetate.3mM.2h.04 4615:::Acetate.3mM.30m.02 4615:::Acetate.3mM.30m.07 4615:::Acetate.3mM.30m.08 4615:::C2_ceramide_25uM_1h_01 4615:::CHP.AA.24h.1 4615:::CK.for.AA.NA.4h 4615:::CK.for.OA.PA.Na.4h 4615:::ETYA_30uM_10min.05 4615:::ETYA_3uM_1h_02 4615:::Glucose_40mM_1h.OA_50uM_10min 4615:::Glucose_5mM_10min_01 4615:::L2A_30uM_30min_04 4615:::L2A_30uM_30Min_06 4615:::L2A_30uM_4h_03 4615:::L2A_30uM_4h_04 4615:::L2A_30uM_4h_05 4615:::L2A_30uM_4h_07 4615:::MTB1248_PA50_1h_01 4615:::MTB1248_PA50_1h_02 4615:::MTB1254_Pellicle_10D_03 4615:::MTB1254_Pellicle_21D_03 4615:::MTB1254.0485.1._OA_10m_02 4615:::MTB1254.0485.1._PA_12h_01 4615:::MTB1254.0485.1._PA_12h_02 4615:::MTB1254.0485.1._PA_12h_04 4615:::MTB1254.0485.1._PA_4h_01 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.3524.1._OA_10min_02 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_04 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB6548_PA50_1h_01 4615:::MTB6548_PA50_1h_02 4615:::MTB889_PA50_1h_01 4615:::MTB889_PA50_1h_02 4615:::OA_50uM_10min_01 4615:::OA_50uM_10min.Glu_40mM_20min_01 4615:::OA_50uM_1h_02 4615:::OA_50uM_1h_03 4615:::OA_50uM_4h_08 4615:::OA50um_10min.10mM_G_20min 4615:::PA_100uM_24h_01 4615:::PA_100uM_4h_T0_01 4615:::PA_25uM_2h_T0_01 4615:::PA_50uM_10min_04 4615:::PA_50uM_10min_T0_01 4615:::PA_50uM_12h_02 4615:::PA_50uM_12h_06 4615:::PA_50uM_1h_05 4615:::PA_50uM_24h_01 4615:::PA_50uM_24h_02 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_02 4615:::PA_50uM_2h_03 4615:::PA_50uM_2h_04 4615:::PA_50uM_2h_T0_01 4615:::PA_50uM_30.min_05 4615:::PA_50uM_4h_02 4615:::PA_50uM_4h_04 4615:::PA_50uM_4h_06 4615:::PA_50uM_8h_01 4615:::PA_50uM_8h_06 4615:::PA_50uM.MAPP_4h_01 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_10uM_4h_01 4615:::Rv_OA30_30mim_01 4615:::Rv_OA30_30mim_03 4615:::Rv_Rv3524.1 4615:::Rv.MT71_100503_01 4615:::Rv.MT71_100603_01 4615:::Starvation_1254_12h_04 4615:::Starvation_1254_24h_03 4615:::Starvation_1254_24h_04 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_3d_03 4615:::Starvation_1254_5d_04 4615:::Starvation_1254_6h_01 4615:::Starvation_1254_6h_03 4615:::Starvation_1254_6h_05 4615:::Starvation_1254_6h_08 4615:::Starvation_1254_OA50_12h_02 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_OA50_5d_03 4615:::Starvation_1254_PA50_6h_01 4615:::Starvation_1254_PA50_6h_02 4615:::Starvation_1254_PA50_6h_04 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::Starvation_1254_PA50.OA30_24h_04 4615:::Starvation_OA50_24h_01 4615:::Succinate_10mM_30min_01 4615:::TBD045 4615:::TBD099 4615:::TBD817 4615:::X7H9_MTB1254.3524.1._OA100_10M_01 4615:::X7H9Cy3.MDGCy5.01 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.3 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4815:::H37Rv.reaeration.for.12hrs.rep.1 4815:::H37Rv.reaeration.for.4hrs.rep.7 4815:::H37Rv.reaeration.for.4hrs.rep.8 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.2.hr.after.macrophage.infection Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.48hrs RV0421C -0.45 -0.5 0 -0.912546321644805 0.55546297839249 -1.07125002975695 0.23805556216821 0.8 1.15 -0.2 0.433601202520668 0.819024493650152 0 0.529957025303039 0.529957025303039 0.35 -0.0870310657389155 0.152304365043102 0.674490759476595 0.15 1.6621379429959 0.891291360736929 0 1.13218091769286 -0.554045980998632 -3.44472066446975 -0.337245379738298 -0.409512246825076 NA -0.457690158216261 -1.37307047464878 NA 0.794935537954559 0.144533734173556 1.25262569617082 -0.385423291129483 1.20444778477963 NA 0.843113449345744 1.49351525312675 0.722668670867781 -0.794935537954559 -1.03582509491049 0.144533734173556 0.0963558227823707 0.62631284808541 -1.18035882908404 0.0963558227823707 0.26497851265152 0.843113449345744 1.25262569617082 NA 0.36133433543389 0.891291360736929 -0.0722668670867781 1.03582509491049 0.120444778477963 0.674490759476595 0.457690158216261 0.144533734173556 -0.433601202520668 -0.9876471835193 0.313156424042705 -0.529957025303039 NA -1.44533734173556 -3.22792006320942 0.554045980998632 0.794748801863895 -0.65880492786086 1.53721149834201 -0.219601642620287 0.0104572210771565 0.805206022941052 -0.543775496012139 1.30401546832142 NA NA NA NA -0.8 -0.260598702525048 -1.30299351262524 -0.507537601190309 0.640077965625748 1.05303149183591 0.0481779113911854 -0.155651713725368 0.674490759476595 0.18159366601293 0.0778258568626841 -0.103767809150245 0.207535618300491 -0.155651713725368 NA 1.86782056470442 0.259419522875614 0.596664902613911 -0.38912928431342 -0.18159366601293 0.752316616339279 0.596664902613911 0.830142473201963 -0.18159366601293 0.233477570588052 0.596664902613911 -1.81593666012929 -1.11550394836514 NA NA 1.1414459006527 2.90549865620687 1.45274932810344 0.674490759476595 NA 1.03767809150245 0.674490759476595 0.726374664051718 0.752316616339279 0.415071236600982 -3.03520841764468 -3.13897622679492 0.830142473201963 1.27115566209051 -0.674490759476595 0.103767809150245 0.233477570588052 -0.441013188888543 -0.985794186927331 -1.68622689869149 -1.68622689869149 0.856084425489525 -0.18159366601293 -1.24521370980294 -1.55651713725368 -0.129709761437807 -1.08956199607758 -0.856084425489525 -2.56825327646857 -1.89376251699198 -1.21927175751538 -3.11303427450736 -2.80173084705663 -2.69796303790638 -3.37245379738298 0.415071236600982 1.45274932810344 -1.1414459006527 -0.0259419522875614 0.752316616339279 2.10129813529247 -0.752316616339279 -2.90549865620687 -0.155651713725368 1.1414459006527 -1.42680737581587 -0.518839045751227 -0.882026377777086 NA -0.285361475163175 -2.10129813529247 -1.84187861241686 -1.01173613921489 -2.7498469424815 -2.33477570588052 -2.20506594444272 -4.48795774574811 -1.81593666012929 -1.53057518496612 -0.882026377777086 -1.78999470784173 -1.06362004379002 -1.81593666012929 -0.363187332025859 -0.907968330064647 1.27115566209051 0.544780998038788 -0.778258568626841 -1.91970446927954 0.622606854901472 1.76405275555417 0.337245379738298 -0.285361475163175 -1.9456464215671 -1.63434299411637 -1.9456464215671 -1.19332980522782 -3.70969917712127 -4.51389969803568 -1.53057518496612 -2.56825327646857 -1.86782056470442 -0.57072295032635 -1.66028494640393 -2.38665961045564 -2.04941423071735 -2.04941423071735 -1.63434299411637 -3.52810551110834 -1.37492347124075 -1.11550394836514 -1.24521370980294 0.466955141176104 -0.544780998038788 0.103767809150245 0.285361475163175 1.19332980522782 0.441013188888543 1.34898151895319 3.57552628410711 0.993604667185952 -0.25384060840517 0.2 0.5 0.75 0.05 -1.15 0.8 -0.4 0.55 -0.4 -1.1 0.3 -0.487929485578814 -0.545332954470439 -1.92556232947351 0.794158474867604 1.29458710286637 -1.51216476721366 -0.0979099489562799 -0.511307511216129 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