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[+] Show/hide bicluster #327 rows and columns.
bicluster 327
Mycobacterium tuberculosis H37Rv
13x40
[+] Show/hide bicluster #327 rows (genes).
bicluster 327 genes
Mycobacterium tuberculosis H37Rv
13
[+] Show/hide bicluster #327 rows (short gene names).
bicluster 327 short names
Mycobacterium tuberculosis H37Rv
13
short_name
[+] Show/hide bicluster #327 rows (long gene names).
bicluster 327 long names
Mycobacterium tuberculosis H37Rv
13
long_name
[+] Show/hide bicluster #327 rows (NCBI RefSeq gene IDs).
bicluster 327 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
26
[+] Show/hide bicluster #327 gene upstream sequences.
bicluster 327 upstream sequences
Mycobacterium tuberculosis H37Rv
13
upstream
[+] Show/hide bicluster #327 columns (arrays; conditions).
bicluster 327 arrays
Mycobacterium tuberculosis H37Rv
40
[+] Show/hide bicluster #327 ratios.
bicluster 327 ratios
Mycobacterium tuberculosis H37Rv
13x40
GENES 2885:::H37Rv..7H9.roll.replicate.4 2885:::Strain.1843..replicate.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::PBS.Tween.7H9 4107:::pH4.8vspH6.8..5h. 4107:::pH5.2vspH6.8..5h. 4107:::pH5.6vspH6.8..4h. 4107:::UV.40J.vs.ctrl.8h.1 4107:::WT.t.0h.WT.t.6h..1 4107:::X0.2ug.mL.Mtm.ctrl..4h...2 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X40mJ.UV.ctrl..6h. 4107:::X80ug.mL.5CL.pH5.6..2h. 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.4 4575:::Purified.Surfactant.Lipids.30min.rep.2 4615:::aceatate.induction.2 4615:::CHP.AA.1h.1 4615:::ETYA_30uM_10min.05 4615:::MTB1254_Bottom_21D_01 4615:::MTB1254_Pellicle_56D_01 4615:::OA_50uM_10min_01 4615:::OA_50uM_1h_07 4615:::OA_50uM_30min_02 4615:::OA_50uM_30min_09 4615:::PA_100uM_2h_04 4615:::PA_300uM_2h_T0_01 4615:::PA_300uM_4h_T0_01 4615:::PA_50uM_1h_08 4615:::PA_50uM_2h_02 4615:::PA_50uM_2h_07 4615:::PA_5uM_10.min_01 4615:::Starvation_1254_OA50_3d_04 4615:::Test.G.OA 4615:::X2.2..Dipyridyl_1mM_20min_01 Raghavan_Nature2008:::ESPR..mutant..R...rep3
RV0667 -0.138357078866994 -1.86782056470442 -0.54446844439677 -1.69841649073022 -0.796386679863932 0.422572524009433 -1.77820291134739 -4.38418993659787 -0.843113449345744 -0.383233386066247 -0.705149430361895 0.889101455673694 -3.38778313282563 1.87017892400329 -0.919760126558994 -1.57892155059294 0.981077468329593 NA 1.62671300814944 -0.580062053149872 1.31965583375856 1.12903887999343 0.32258253714098 -1.74487826908076 -1.26100446336929 0.513199490906105 0.762467815060499 1.2756673059666 1.46628425973173 -0.967747611422941 -0.791793500255134 -0.689153602073913 0 -1.23167877817465 -2.09678649141637 -0.205279796362442 -2.75661440829565 1.14370172259075 -0.791793500255134 -1.99
RV0668 0.994873870227978 -1.06232294617564 -1.03908035919367 -1.56773527878344 -0.309901159759517 0.309901159759517 -2.59877322033629 -4.68175938930813 -1.30930559192516 -0.55546297839249 -1.2497917013831 1.19027781084105 -2.55909729330826 2.49958340276621 -0.456273160822403 -0.039675927028035 1.78541671626158 0.0595138905420525 1.23656639237376 -0.26497851265152 2.261527840598 1.05537965894573 0.039675927028035 -1.62671300814944 -1.99173153680736 -0.293601860007459 1.0236389173233 1.4680093000373 1.00776854651209 -0.626879647042953 -0.293601860007459 -0.150768522706533 0.166638893517747 -1.10299077137937 -1.65845374977186 -0.976027804889661 -2.30913895303164 1.40452781679244 -1.18234262543544 -0.624183437637181
RV2888C 1.80763523539727 -1.8615944961554 -0.843113449345744 -3.39654275307857 -1.71031585438708 0 -3.20894088599471 NA -1.36942063287672 -1.08327303794726 -2.37093721512985 0.735808101247195 -2.65708481005931 2.35049810120632 -0.572295189858929 -0.878881898711927 1.26722506325906 -0.470099620241263 0.674490759476595 -0.364225010117361 1.60593037970618 1.71834550628561 1.15626987338845 -1.33292221515613 -0.578134936694225 0.240889556955927 0.931439620229584 0.995676835417831 1.28474430376494 -1.34898151895319 -0.835083797447213 -0.867202405041337 0.562075632897163 -0.738727974664842 -2.37677696196515 -0.62631284808541 NA 0.674490759476595 -0.0321186075941236 -1.56231885182278
RV2889C 1.44533734173556 -1.99938332273419 -0.882026377777086 -3.03520841764468 -1.24521370980294 -0.155651713725368 -3.73564112940883 -5.73317145555106 -0.804200520914402 -1.45274932810344 -1.97158837385466 1.55651713725368 -1.55651713725368 1.63434299411637 -0.518839045751227 -1.58245908954124 1.29709761437807 -0.0259419522875614 1.1 -0.922987355073236 2.32324594930827 0.393452943028014 0.543339778467257 -2.15462325943912 -2.36071765816808 0.674490759476595 1.0492078480747 0.805641740485933 1.42392493667281 -0.44966050631773 -0.730698322766312 -0.693226613906501 1.53634006325224 -2.67922718347648 -2.66049132904657 -0.711962468336406 -3.31624623409326 1.48013249996253 -0.599547341756974 -1.06268688003866
RV2890C 0.49382359175965 -2.13187257905995 -1.50227487337969 -1.36431085439584 -1.82419091767534 0.229940031639748 -0.925015898710759 -2.62087837968048 -0.79011774681544 -0.115626987338845 -1.7151336455262 -0.0192711645564741 -3.04484399992292 1.13699870883197 0.0385423291129483 -2.42816673411574 0.385423291129483 -0.173440481008267 1.83076063286504 -0.638991245819932 1.54826287970764 0.950418797444293 0.521197405050096 -1.54826287970764 -1.83952025311799 0.843113449345744 0.873772120231044 1.25700550629729 1.68622689869149 -1.08838281642814 -0.521197405050096 -0.674490759476595 0.919760126558993 -1.10371215187079 -2.22275363918423 -0.398562721508897 NA 1.25700550629729 -0.306586708852998 -1.355
RV3417C 0.81698880725334 -1.13998438221396 -0.84985835694051 -0.134898151895319 -1.32200188857413 0.809388911371914 -2.76159424163059 -3.48698996408655 0.407239703834925 0.992646778097631 -2.13800844513336 0.890836852138899 -0.216346092662304 0.992646778097631 -0.292703537131353 -0.839931889159534 1.4126127226774 -0.890836852138899 1.42392493667281 -0.2296138755665 2.30846837398328 NA NA -1.1209846425104 -1.27298256013893 0.607991670514114 0.341995314664189 0.446493883033803 0.62699141021768 -0.997486334437218 -0.873988026364039 -0.835988546956907 1.36798125865676 -2.88796043494204 NA NA -2.62196407909212 0.607991670514114 0.0284996095553491 -2.04161522607393
RV3418C 0.498085483921178 -2.51118098143594 -1.31525698097936 0.404694455685957 -0.719456810108368 0 -2.89230783300981 -2.229249120304 0.651626665935016 -0.217208888645005 -1.23466105124529 1.24609309801608 -1.58905450113978 0.525874151456328 0.0800243273955283 -1.6690788285353 1.46330198666109 -0.754515086872123 0.775664373398084 -1.01173613921489 1.69559482590644 0.964896503140129 1.30214188287843 -1.47076457274758 -2.2389346043737 0.871217230990602 0.768170031626122 1.17099090186909 0.562075632897163 -0.262301962018676 -0.749434177196217 -0.590179414542021 2.26703838601856 -1.27403810123357 -1.97663264235502 -0.10304719936448 -3.06331219928954 0.252934034803723 -0.0936792721495271 -0.825
RV3456C 0.932806369488909 -2.48270002956279 -1.2908357638259 -1.63971029458965 -0.709378212552971 0.4767951920438 -2.261527840598 -2.98891983611197 -0.912546321644805 -1.03157410272891 -1.13737657480367 0.965447557682185 -2.94924390908394 1.83831795229896 0.07935185405607 -1.95734573338306 1.53413584508402 0.10580247207476 1.19909468351395 -0.573317145555106 NA 1.24645892351275 0.199649264805072 -2.21772561715905 -1.68892486172939 -0.113314447592068 0.491029272898961 0.901119654660731 1.41912855793876 -0.437070012140834 -0.221232969108323 -0.426278159989208 0.944287063267233 -0.285984082018076 -1.74288412248752 -0.383110751382706 -3.01632267637933 1.10616484554162 -0.512612977202212 -0.125
RV3457C 0.501050278468328 -1.09845637971903 -0.853032431102753 -2.7178010014204 -0.23805556216821 0.15870370811214 -2.05100251351046 -3.27609797460061 -0.977323345364046 -0.261537233266435 -1.11497452076743 0.93602799274303 -2.07853274859114 1.65181410484064 -0.536839584073208 -1.37651175403387 1.62428386975996 -0.93602799274303 0.596664902613911 -0.89932101263546 2.12217824323124 1.13511859521671 0.0987059648014529 -1.46413847788822 -1.38188350722034 0.148058947202179 0.83900070081235 0.756745730144473 0.98705964801453 -0.608686782942293 -0.131607953068604 0.378372865072236 1.28317754241889 -1.94121730776191 -2.64861005550565 -0.361921870938661 -2.84602198510856 1.00351064214811 -0.296117894404359 -1.64203612479475
RV3458C 1.30883325946053 -2.59357756322548 -1.65410829109736 -2.56948860752989 -1.71834550628561 0.192711645564742 -1.17192769459058 -2.28483744772697 NA -0.767233238904627 -0.851544583839201 0.480574666127074 -2.75698097936058 1.6440712262242 -0.177053824362606 -2.41973559962229 0.548023742074734 -0.3962633211925 2.05 -1.13177263030818 NA 0.87287039461677 0.277731489196245 -1.37543213697188 -1.52091053607468 0 0.727391995513975 1.11092595678498 0.886095703626115 -1.15060188381302 -0.44966050631773 -0.47611112433642 0.7935185405607 -0.912546321644805 -1.78541671626158 0 -3.9675927028035 0.76706792254201 -0.39675927028035 -0.775
RV3459C 0.304182107214936 -1.49445991805599 -1.96565878476036 -4.43236784798905 -3.10265749359234 0.289067468347112 -0.974264430355082 -1.19909468351395 -0.734445493652293 -0.959275746811158 -0.869343645547612 0.749434177196217 -2.8328611898017 0.974264430355082 -0.0599547341756973 -1.91855149362232 1.06419653161863 -0.674490759476595 1.26100446336929 -0.0146628425973173 NA 1.40518908224291 0.0421556724672872 -0.983632357570035 -1.25061828319619 0.224830253158865 1.1100993749719 0.983632357570035 1.44734475471019 -1.71433068033635 -0.435608615495301 -0.477764287962588 0.758802104411169 -1.6440712262242 -1.3068258464859 -0.618283196186879 -3.66754350465399 0.351297270560727 -0.463712397140159 -0.99
RV3460C 0.791793500255134 -2.75661440829565 -1.58577082813114 -2.20285811871611 -1.98759511037252 0.638613591419329 -0.97623662555823 -1.72172641234815 -0.301745866081635 -0.993986382386561 -0.461493677536618 0.337245379738298 -4.15344309782956 1.75722592600481 -0.0354995136566629 -2.5382152264514 0.709990273133258 -0.85198832775991 2.73543474676619 -0.64287400512613 NA 1.26962966489712 -0.0529012360373801 -0.68771606848594 -1.24317904687843 0.674490759476595 0.87287039461677 1.11092595678498 1.21672842885974 -1.29608028291581 -0.436435197308385 -0.753842613532665 0.68771606848594 -0.60836421442987 -1.08447533876629 -0.18515432613083 -2.94924390908394 0.648040141457905 -0.7935185405607 -1.2
RV3804C 1.08173046331152 -2.25254461183693 -0.0722668670867781 -2.55342930373282 -2.28845079108131 0.722668670867781 -1.18410599997002 -1.55882308856813 -1.40893625312889 -0.839366278459763 -1.15412863288217 0.404694455685957 -2.08342701260548 1.64875518983168 -0.239818936702789 -3.02771407587272 1.09417389870648 -0.539592607581276 1.02948589604322 -0.466011797456557 0.641386918520689 0.484143673980133 0.467591753502179 -1.4855348628963 -1.89105691460616 1.12966857262031 0.773802282344315 1.33656757859473 1.37794737978961 -0.608283077564782 0.202761025854927 -0.0289658608364181 1.08828877142543 -0.600007117325806 -0.732422481149432 -0.120001423465161 -3.31452207571014 1.19587625453212 -0.931045526884871 -1.3675
[+] Show/hide bicluster #327 motif PSSM #1. bicluster 327 motif PSSM #1 Mycobacterium tuberculosis H37Rv 12x4
POSITION A C G T
1 1 0 0 0
2 0 0 1 0
3 0 0 1 0
4 1 0 0 0
5 0.666667 0 0 0.333333
6 0 0 1 0
7 1 0 0 0
8 0.333333 0 0.666667 0
9 0 0 1 0
10 0.666667 0 0.333333 0
11 1 0 0 0
12 1 0 0 0 [+] Show/hide bicluster #327 motif PSSM #2. bicluster 327 motif PSSM #2 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0 0 1 0
2 1 0 0 0
3 0 0.4 0.2 0.4
4 0.2 0.6 0.2 0
5 0.4 0.2 0 0.4
6 0.8 0 0 0.2
7 0.8 0 0 0.2
8 0.2 0 0 0.8
9 0 0.2 0 0.8
10 0.4 0.4 0 0.2
11 0.2 0.2 0.4 0.2
12 0 0.4 0.4 0.2
13 0 0 1 0
14 0.4 0.4 0.2 0
15 0.6 0 0.2 0.2
16 0 0 1 0
17 0 0.4 0.6 0
18 0 0 1 0
19 0.6 0.4 0 0
20 0.6 0.2 0 0.2
21 0 1 0 0 |