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[+]
Show/hide bicluster #333 rows and columns.
bicluster 333
Mycobacterium tuberculosis H37Rv
15x9
- RV0700
- RV0702
- RV0703
- RV0704
- RV0705
- RV0707
- RV0708
- RV0709
- RV0710
- RV0714
- RV0715
- RV0716
- RV0718
- RV0722
- RV3456C
- 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
- 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3
- 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3
- 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h
- 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3
- 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2
- Raghavan_Nature2008:::ESPR..mutant..R...rep3
- Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr
- Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.6.5.7H9.broth.for.2.hr
[+]
Show/hide bicluster #333 rows (genes).
bicluster 333 genes
Mycobacterium tuberculosis H37Rv
15
- RV0700
- RV0702
- RV0703
- RV0704
- RV0705
- RV0707
- RV0708
- RV0709
- RV0710
- RV0714
- RV0715
- RV0716
- RV0718
- RV0722
- RV3456C
[+]
Show/hide bicluster #333 rows (short gene names).
bicluster 333 short names
Mycobacterium tuberculosis H37Rv
15
short_name
| RV0700 | rpsJ |
| RV0702 | rplD |
| RV0703 | rplW |
| RV0704 | rplB |
| RV0705 | rpsS |
| RV0707 | rpsC |
| RV0708 | rplP |
| RV0709 | rpmC |
| RV0710 | rpsQ |
| RV0714 | rplN |
| RV0715 | rplX |
| RV0716 | rplE |
| RV0718 | rpsH |
| RV0722 | rpmD |
| RV3456C | rplQ |
[+]
Show/hide bicluster #333 rows (long gene names).
bicluster 333 long names
Mycobacterium tuberculosis H37Rv
15
long_name
| RV0700 | 30S ribosomal protein S10 |
| RV0702 | 50S ribosomal protein L4 |
| RV0703 | 50S ribosomal protein L23 |
| RV0704 | 50S ribosomal protein L2 |
| RV0705 | 30S ribosomal protein S19 |
| RV0707 | 30S ribosomal protein S3 |
| RV0708 | 50S ribosomal protein L16 |
| RV0709 | 50S ribosomal protein L29 |
| RV0710 | 30S ribosomal protein S17 |
| RV0714 | 50S ribosomal protein L14 |
| RV0715 | 50S ribosomal protein L24 |
| RV0716 | 50S ribosomal protein L5 |
| RV0718 | 30S ribosomal protein S8 |
| RV0722 | 50S ribosomal protein L30 |
| RV3456C | 50S ribosomal protein L17 |
[+]
Show/hide bicluster #333 rows (NCBI RefSeq gene IDs).
bicluster 333 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
30
- NP_215214
- NP_215214.1
- NP_215216
- NP_215216.1
- NP_215217
- NP_215217.1
- NP_215218
- NP_215218.1
- NP_215219
- NP_215219.1
- NP_215221
- NP_215221.1
- NP_215222
- NP_215222.1
- NP_215223
- NP_215223.1
- NP_215224
- NP_215224.1
- NP_215228
- NP_215228.1
- NP_215229
- NP_215229.1
- NP_215230
- NP_215230.1
- NP_215232
- NP_215232.1
- NP_215236
- NP_215236.1
- NP_217973
- NP_217973.1
[+]
Show/hide bicluster #333 gene upstream sequences.
bicluster 333 upstream sequences
Mycobacterium tuberculosis H37Rv
15
upstream
| RV0700 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0702 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0704 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0705 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0703 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0707 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0708 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0709 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0710 | CCCGAGCGCGGGGCCGGTGGACCTACGACAGGTAAACAGCGGCGCAGTATTCGGCGCAACGCTAGATCGGTCCAGAAGGACCGGGTCGATCGGCGCGCCGGGGAGCACCGGACCCGGATACGGGCTCGAGTGGGAGTGAGGTAGGAGAAGCGTGGCGGGACAGAAGATCC |
| RV0714 | TCAGGGGTTGCCGTGAGCAGACCTCGGCCGGCGCGCATAAGCTTTGCTTGGTCGGCCCCGCGTGCCCGTCGGCGACAAAGACCGCGCACGTCAGGGATGGTCCTGGCTGGCTCCTCCTACCGTGCACACGTCAACCAGGTCAGGAGATCTAGTGATTCAGCAGGAATCGC |
| RV0715 | TCAGGGGTTGCCGTGAGCAGACCTCGGCCGGCGCGCATAAGCTTTGCTTGGTCGGCCCCGCGTGCCCGTCGGCGACAAAGACCGCGCACGTCAGGGATGGTCCTGGCTGGCTCCTCCTACCGTGCACACGTCAACCAGGTCAGGAGATCTAGTGATTCAGCAGGAATCGC |
| RV0716 | TCAGGGGTTGCCGTGAGCAGACCTCGGCCGGCGCGCATAAGCTTTGCTTGGTCGGCCCCGCGTGCCCGTCGGCGACAAAGACCGCGCACGTCAGGGATGGTCCTGGCTGGCTCCTCCTACCGTGCACACGTCAACCAGGTCAGGAGATCTAGTGATTCAGCAGGAATCGC |
| RV0718 | TCAGGGGTTGCCGTGAGCAGACCTCGGCCGGCGCGCATAAGCTTTGCTTGGTCGGCCCCGCGTGCCCGTCGGCGACAAAGACCGCGCACGTCAGGGATGGTCCTGGCTGGCTCCTCCTACCGTGCACACGTCAACCAGGTCAGGAGATCTAGTGATTCAGCAGGAATCGC |
| RV0722 | TCAGGGGTTGCCGTGAGCAGACCTCGGCCGGCGCGCATAAGCTTTGCTTGGTCGGCCCCGCGTGCCCGTCGGCGACAAAGACCGCGCACGTCAGGGATGGTCCTGGCTGGCTCCTCCTACCGTGCACACGTCAACCAGGTCAGGAGATCTAGTGATTCAGCAGGAATCGC |
| RV3456C | CCCAACCCTCGGGGGGCGCCGCCCCCCGAGTACCCCCCAACCCAACCCTCGGGGGGCGCCGCCCCCCGAGTACCCCCACCCTCGGGGGCGCCGCCCCCGAGTGCCCCCACAGACGTCATATGGCGGACGTCGAAAGGAAGAAGAAACACCATGCTGATCTCACAGCGCCC |
[+]
Show/hide bicluster #333 columns (arrays; conditions).
bicluster 333 arrays
Mycobacterium tuberculosis H37Rv
9
- 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3
- 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3
- 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3
- 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h
- 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3
- 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2
- Raghavan_Nature2008:::ESPR..mutant..R...rep3
- Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr
- Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.6.5.7H9.broth.for.2.hr
[+]
Show/hide bicluster #333 ratios.
bicluster 333 ratios
Mycobacterium tuberculosis H37Rv
15x9
GENES 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.6.5.7H9.broth.for.2.hr
RV0700 -1.16349656009713 -3.45676514231755 -1.03702954269527 -1.44165963857593 1.64053558917856 0.75 -0.0825 -5.69875 0.24325
RV0702 -1.79864202527092 -3.9232879176222 -1.84360807590269 -1.06613055530172 0.741939835424255 2 -1.12347406623662 -5.5385 -1.006
RV0703 -1.54883063287218 -2.81037816448581 -1.68622689869149 -1.25904941768964 0.203915811004552 2.85 -0.663249246818652 -5.3295 -0.966
RV0704 -2.14350876952308 -3.25241730628968 -1.21751298108911 -1.45117708857086 1.27606359900977 NA 0.07 -3.86125 -0.41525
RV0705 -1.83414153892758 -3.99961187198402 -1.45548005992318 -1.13858990590544 2.64737623094564 2.825 -0.6725 -3.66749306714206 -1.50440975570264
RV0707 -1.96658751558236 -4.07945013562953 -2.06410425189223 -0.993986382386561 1.57772186347134 3.025 -1.99743930174823 -4.04394586818613 -0.395398520798284
RV0708 -1.89922398063147 -3.53220160883796 -1.5797283577215 -1.3248925632576 0.565287493656575 3.525 -0.605 -2.75875 0.08525
RV0709 -1.47227552874999 -3.34344344213667 -1.09514091054802 -1.11166069617439 1.90083759488859 3.4 -0.0767384696410497 -3.58321061875239 -1.17786007690918
RV0710 -1.52242199996146 -2.69796303790638 -1.46460850629204 NA 1.84297475124591 3.1 0.5425 -4.029 -0.651
RV0714 -1.06318034968345 -2.51505028957374 -1.14320467707897 -0.199030060173422 0.312568888537934 2.05 0.475756874987956 -4.43905376222293 -1.31909154943703
RV0715 -1.12091629812297 NA -1.28589964936185 -0.379401052205585 0.887487841416573 2.25 0.435094039211663 -4.44236108288461 -0.702103645372198
RV0716 -1.42638209790952 -3.62676998538235 -0.619204631650645 -0.984093075301918 0.958242044497784 1.95 0.105 -2.32724069899202 -0.41162666202338
RV0718 -1.69629392495233 -4.02177699120746 -1.01173613921489 -0.935583956693342 0.546422893753191 NA 0.115 -3.98448358216937 -0.845929312958827
RV0722 -2.3520703407389 -4.60037287232755 -1.00308882178571 NA 0.569828400247468 1.6 -0.89 -3.29686846602122 -0.638864552337931
RV3456C -1.87229331509882 -3.54689106276485 -0.941961233062142 -0.462885815327075 0 0.925 -0.125 -3.9135 -0.3525
[+] Show/hide bicluster #333 motif PSSM #1. bicluster 333 motif PSSM #1 Mycobacterium tuberculosis H37Rv 10x4 POSITION A C G T
1 0 0 1 0
2 0 0 1 0
3 0.333333 0 0 0.666667
4 1 0 0 0
5 0 0 1 0
6 0.333333 0 0.666667 0
7 1 0 0 0
8 0 0 1 0
9 0.666667 0 0.333333 0
10 1 0 0 0
[+] Show/hide bicluster #333 motif PSSM #2. bicluster 333 motif PSSM #2 Mycobacterium tuberculosis H37Rv 6x4 POSITION A C G T
1 0 0 0.666667 0.333333
2 1 0 0 0
3 0 0 1 0
4 1 0 0 0
5 0 0 0 1
6 0 1 0 0
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