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[+] Show/hide bicluster #353 rows and columns.
bicluster 353
Mycobacterium tuberculosis H37Rv
4x72
[+] Show/hide bicluster #353 rows (genes).
bicluster 353 genes
Mycobacterium tuberculosis H37Rv
4
[+] Show/hide bicluster #353 rows (short gene names).
bicluster 353 short names
Mycobacterium tuberculosis H37Rv
4
short_name
[+] Show/hide bicluster #353 rows (long gene names).
bicluster 353 long names
Mycobacterium tuberculosis H37Rv
4
long_name
[+] Show/hide bicluster #353 rows (NCBI RefSeq gene IDs).
bicluster 353 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
8
[+] Show/hide bicluster #353 gene upstream sequences.
bicluster 353 upstream sequences
Mycobacterium tuberculosis H37Rv
4
upstream
[+] Show/hide bicluster #353 columns (arrays; conditions).
bicluster 353 arrays
Mycobacterium tuberculosis H37Rv
72
[+] Show/hide bicluster #353 ratios.
bicluster 353 ratios
Mycobacterium tuberculosis H37Rv
4x72
GENES 2867:::H37Rv..Dubos.media.replicate.2 2885:::H37Rv..7H9.roll.replicate.2 2885:::Strain.1006...replicate.1 2885:::Strain.1006...replicate.3 2885:::Strain.1254...replicate.1 2885:::Strain.1254...replicate.4 2885:::Strain.1843...replicate.2 2885:::Strain.9700665..replicate.1 2885:::Strain.9700665..replicate.4 2885:::Strain.9802826..replicate.2 2885:::Strain.CDC1551..replicate.1 2885:::Strain.CDC1551..replicate.4 2885:::Strain.H37Ra..replicate.4 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4 4107:::pH4.8vspH6.8..2h.B 4107:::X0.12mg.mL.Nam.pH5.6..2h..1 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.12mg.mL.PZAvspH5.6..6h. 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X1ug.mL..124196vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6hB 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..3 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X60ug.mL.ChlorprovsEtOH..6h 4107:::X9ug.mLNaturalproductvsDMSO.6h 4365:::H37Rv.diamide.1h.rep.5 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1 4615:::AA_30uM_2h_06 4615:::AA_30uM_30min_01 4615:::CK.MDG.2h.for.PA.NA.2 4615:::MTB1254_Pellicle_56D_01 4615:::MTB1254.1683._01 4615:::MTB1254.3219.1._01 4615:::PA_100uM_24h_T0_01 4615:::PA_50uM_2h_04 4615:::PA_50uM_2h_T0_01 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_5uM_10.min_01 4615:::Rv.MT71_100703_01 4615:::Rv.MT71_100803_01 4615:::Rv.MT90_100703_01 4615:::Starvation_1254_12h_02 4615:::Tet_100uM_30M_01 4615:::X7H9Cy3.MDGCy5.01 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.1 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.2 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep2 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.6.5.7H9.broth.for.2.hr
RV2312 0.746757626563373 0.461493677536618 0.993986382386561 1.13598443701321 0.319495622909966 0.354995136566629 NA 0.958486868729898 0.496993191193281 0.780989300446584 0.212997081939977 -1.02948589604322 -0.496993191193281 -0.749434177196217 0.861849303775649 -1.34898151895319 -0.711962468336406 3.89705772142033 1.34898151895319 -0.861849303775649 0.112415126579433 -0.749434177196217 1.31150981009338 1.89700526102792 0.379401052205585 2.61365169297181 0.505868069607446 0.927424794280318 -0.548023742074734 -0.969580466747606 -0.548023742074734 0.55546297839249 -3.53115750549512 -0.47611112433642 0.31740741622428 1.15060188381302 3.8485649217194 -1.62671300814944 -0.515787051364455 0.39675927028035 0.7935185405607 -0.119027781084105 0.912546321644805 0 0.366152126573009 -0.444176841606538 -0.197850622779801 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.26154753161363 -1.478691280391 0.63481483244856 -0.488290365 -0.23 1.0065 -1.183
RV2637 0.0778258568626838 0.190240983442116 1.02038345664408 0.397776601742607 -0.778258568626841 NA -0.639901489759847 1.7467581206958 1.15874053551107 1.6775795812623 -0.363187332025859 NA -0.12106244400862 -0.379401052205585 1.26467017401862 -0.0843113449345745 -0.505868069607447 3.20383110751383 1.93916093349521 -2.14993929583165 -0.927424794280318 -0.590179414542021 -1.85484958856064 0.782409280992851 NA NA NA 1.51085930122757 -0.728450020234723 0.404694455685957 -0.728450020234723 0.705862422708065 -1.45878234026333 NA -1.74112730934656 3.15285215476269 1.52152566672627 -0.454889116856308 0.737234085939534 0.235287474236022 -1.01957905502276 -0.894092402096882 1.0823223814857 -1.68622689869149 0.0249811392398739 -1.0931401963931 -0.698703248278319 0.478275265810677 -1.01786787339195 NA 0.846179316434274 -1.38577192401555 0.208478962020038 NA -0.576383012643636 NA -1.63104129109795 -0.134898151895319 0.306586708852998 NA 1.21408336705787 -1.50840660755675 1.43482579743203 1.87631065818035 NA -1.99281360754449 -0.763239543618253 NA NA 0.6325 0.47225 -2.71925
RV3242C NA NA NA NA NA NA NA NA NA NA NA NA NA -0.489336433345765 0.542237669383145 -1.15060188381302 -1.38865744598123 4.24532419199975 2.94924390908394 -1.81186733428027 -1.81186733428027 -0.542237669383145 -1.65316362616813 1.15316162104063 0.282850963651475 0.413397562259849 -1.45777035112683 2.1105033441687 -1.10964608817117 -0.935583956693342 -1.10964608817117 1.0492078480747 -0.974264430355082 -0.374717088598108 -0.262301962018676 NA 3.74717088598108 -1.61128348097187 0.824377594915839 0.299773670878487 -1.23656639237376 -0.936792721495271 0.599547341756973 -0.379401052205585 NA -0.605665171774902 -0.125 0.31740741622428 -1.07125002975695 0.912546321644805 1.94412042437372 -1.22995373786909 0.436435197308385 -1.62671300814944 -0.991898175700875 -2.18217598654193 -0.87287039461677 -0.23805556216821 0.357083343252315 1.26962966489712 0.833194467588735 -0.991898175700875 1.30930559192516 1.38865744598123 -0.466258712926774 -0.324754810118361 -1.82397501154234 NA 1.47166867 0.436296470290805 NA NA
RV3612C 0.910562525293404 0 0.973035849736728 0.995150300867108 -0.464403473737984 0.552861278259504 -0.663433533911405 1.10572255651901 0.995150300867108 0.729776887302546 -1.17206590991015 -0.774005789563306 -0.0663433533911406 -0.724453037956343 0.649509620236721 -0.699471898716469 -1.47388721515256 NA 0.89932101263546 -2.34822708854815 -1.79864202527092 -1.67373632907155 -2.14837797462916 0.890327802509106 0.107918521516255 0.593551868339404 -0.809388911371914 3.50735194927829 -0.512612977202212 -1.18710373667881 -0.512612977202212 1.10371215187079 -1.24678594933552 -0.347464936700064 -0.388343164547131 2.61620658221225 2.71840215182991 -0.940199240482527 1.00151658225313 0.858442784788394 -0.51097784808833 -1.28766417718259 0.838003670864861 -0.65 0.218753759830247 -0.698579715172188 -0.6033626430227 0.688542650299024 -1.03983992085975 0.576127523719592 0.758802104411169 NA 0.463712397140159 -0.463712397140159 -1.99536849678493 -2.44502900310266 -0.89932101263546 -0.505868069607446 0.477764287962588 0.800957776878457 0.379401052205585 -0.941476685102747 0.548023742074733 2.27640631323351 -0.885777021481312 -0.851544583839201 NA 0.627109177199314 NA 0.547897148463721 0.983864620228257 -2.64573820806749
[+] Show/hide bicluster #353 motif PSSM #1. bicluster 353 motif PSSM #1 Mycobacterium tuberculosis H37Rv 10x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 0 0 0 1
4 0 0 0 1
5 0 0 1 0
6 1 0 0 0
7 0 0 1 0
8 0 0 0 1
9 0 1 0 0
10 1 0 0 0 [+] Show/hide bicluster #353 motif PSSM #2. bicluster 353 motif PSSM #2 Mycobacterium tuberculosis H37Rv 12x4
POSITION A C G T
1 0 0 1 0
2 0.25 0 0 0.75
3 0 0.5 0.5 0
4 0 1 0 0
5 0.25 0 0.75 0
6 0 0.75 0.25 0
7 0.75 0 0.25 0
8 1 0 0 0
9 0 1 0 0
10 1 0 0 0
11 0.25 0.5 0 0.25
12 0 0 0 1 |