GENES 2867:::H37Ra..7H9.roll.replicate.4 2867:::H37Ra..Youman.media.replicate.2 2867:::H37Ra..Youman.media.replicate.3 2867:::H37Ra..Youman.media.replicate.4 2867:::H37Rv..Dubos.media.replicate.1 2867:::H37Rv..Dubos.media.replicate.3 2867:::H37Rv..Youman.media.replicate.2 2885:::H37Ra..7H9.roll.replicate.1 2885:::H37Ra..7H9.roll.replicate.3 2885:::Strain.1006...replicate.4 2885:::Strain.1254...replicate.1 2885:::Strain.1254...replicate.4 2885:::Strain.1843...replicate.3 2885:::Strain.9700665..replicate.2 2885:::Strain.CDC1551..replicate.1 2885:::Strain.M3061a..replicate.1 2885:::Strain.M3061a..replicate.2 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.1 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.2 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.2 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.2 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2a 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.high.iron.ideR.KO.1a 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4084:::High.iron.wt.vs.low.iron.wt.3b 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.3 4101:::H37Rv.Day6.1 4101:::H37Rv.Day8.1 4101:::NRP.Day10..1 4101:::NRP.Day10..2 4101:::NRP.Day12..2 4101:::NRP.Day14..6 4101:::NRP.Day14..9 4101:::NRP.Day20..2 4101:::NRP.Day6..2 4101:::NRP.Day8..2 4107:::DIPED.50ug.mL.vs.DMSO.12h.2 4107:::Dubos.NRP.1vsDubos.log.phase 4107:::H2O2.4mM.vs.ctrl.8h.1 4107:::PBS.Tween.7H9 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::Rif.5ug.mL.vsDMSO.2.5h 4107:::WT.t.0h.WT.t.6h..1 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051. 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052. 4107:::X.241..10ug.mL..DMSO..12h..2 4107:::X.241..1ug.mL..DMSO..12h..1 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.12mg.mL.PZA.pH5.6..5h. 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.13mg.mL.TLMvsDMSO..6h 4107:::X0.5uMValinomycin.70mMKClvsDMSO.6h 4107:::X0.5uMValinomycinvsDMSO.6h 4107:::X100ug.mL.Cphx.DMSO..6h 4107:::X10ug.mL..59vsDMSO..6h 4107:::X12ug.mLEthionamidevsEtOH.6h 4107:::X1ug.mL..241vsDMSO..6h 4107:::X1ug.mL..59vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..3 4107:::X4d.Dubos.NRP.1vsDubos.aero.A 4107:::X6ug.mL.MenadionevsDMSO..6h 4363:::H37Rv.hypoxia.4hr.rep.6 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.1 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.5 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3 4575:::Whole.Lung.Surfactant.30min.rep.2 4581:::H37Rv.Ctrl.vs.5.ug.ml.garlic.extract.6hrs 4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1 4583:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.2 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4615:::AA_30uM_2h_02 4615:::AA_30uM_2h_05 4615:::AA_30uM_2h_06 4615:::AA_60uM_2h_T0_03 4615:::aceatate.induction.1 4615:::Acetate.3mM.10m.02 4615:::Acetate.3mM.10m.07 4615:::Acetate.3mM.2h.03 4615:::Acetate.3mM.30m.02 4615:::CK.for.AA.NA.24h 4615:::ETYA_10uM_1h_02 4615:::Glycerol_1._30M_01 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_4h_T0_02 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_04 4615:::MDG.MD.glycerol 4615:::MTB1254_Pellicle_10D_03 4615:::MTB1254_SDS_90MIN_01 4615:::MTB1254_SDS_90MIN_04 4615:::MTB1254.1683._01 4615:::MTB1254.3219.3._01 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254TA1_OA.30min_02 4615:::MTB1254vsMTB1254.0485.1. 4615:::OA_50uM_2h_03 4615:::PA_100uM_2h_T0_02 4615:::PA_100uM_2h_T0_05 4615:::PA_50uM_1h_05 4615:::PA_50uM_1h_06 4615:::PA_50uM_1h_10 4615:::PA_50uM_30.min_07 4615:::PA_50uM_4h_06 4615:::PA_50uM_8h_01 4615:::PA_50uM.AA_30uM_2h_04 4615:::PA_50uM.OA_30uM_4h_02 4615:::PA_50uM.OA_30uM_4h_03 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_24h_04 4615:::Starvation_1254_24h_05 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_5d_02 4615:::Starvation_1254_OA50_5d_03 4615:::Starvation_1254_OA50_5d_04 4615:::Starvation_T0 4615:::TBD662 4615:::TBE735 4615:::Tet_100uM_30M_01 4615:::WT_WhiB4_PA_10min_01 4615:::X7H9_MTB1254.3524.1._OA50_10M_01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.3 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.4 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.5 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.4 4815:::H37Rv.reaeration.for.12hrs.rep.1 4815:::H37Rv.reaeration.for.12hrs.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.3 4815:::H37Rv.reaeration.for.24hrs.rep.4 4815:::H37Rv.reaeration.for.4hrs.rep.1 4815:::H37Rv.reaeration.for.6hrs.rep.3 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.2 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.4 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.6 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.48hrs RV0695 0.535310126568726 0.835083797447213 -0.0856496202509962 -1.41321873414144 -0.813671392384464 0.0856496202509962 -1.39180632907869 1.80426278159989 0.758802104411169 -0.826251180358829 -0.219209496829893 0.522730338594361 NA -0.151760420882234 0.859975718332659 1.1297720221233 1.36584378794011 -0.751137436689845 0 2.11982810121216 0.357893056048806 -1.37651175403387 -1.54169316451793 -2.20241880645419 -0.550604701613547 -1.04614893306574 0.165181410484064 -0.0825907052420321 1.62428386975996 0.633195406855579 -0.0275302350806774 1.51416292943725 0.660725641936256 1.12873963830777 1.76193504516335 NA -0.302832585887451 0.220241880645419 -0.798376817339643 -0.440483761290838 -0.880967522581675 -2.58784209758367 -1.32145128387251 -0.798376817339643 -1.07367916814642 -1.59675363467929 NA NA -0.0861052033374377 0.0717543361145314 -0.875402900597283 -1.19112197950122 0.861052033374377 -0.786905886056028 0 -2.50123656639237 -0.983632357570035 -0.983632357570035 -0.477764287962588 0.168622689869149 -0.393452943028014 0.786905886056028 0.75880210441117 0.85 1.60593037970618 0.578134936694225 0.674490759476595 -0.674490759476595 -0.0963558227823708 -1.18838848098257 -0.481779113911854 0.0642372151882472 -1.44533734173556 -0.867202405041337 0.466955141176104 -0.907968330064648 1.1414459006527 NA 0.933910282352209 1.29709761437807 2.30883375359296 0.830142473201963 0.830142473201963 0.544780998038789 0.492897093463666 0.129709761437807 NA -0.726374664051718 NA -1.11550394836514 -2.49042741960589 NA NA -0.674490759476595 NA 0.415071236600982 0.337245379738298 -0.0259419522875614 NA NA NA -0.115697320056204 -0.6 0.05 -0.05 0.189700526102792 -0.0210778362336436 -0.274011871037367 1.24359233778497 0.779879940644813 NA 0.442634560906516 NA 0.499622784797478 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0.421556724672872 -0.442634560906516 1.09604748414947 -0.442634560906516 NA -0.256417974677053 -0.914185822761666 -0.490538734164796 -0.958780253140284 0.72465949365254 0.949793110283369 -0.536839584073208 0.536839584073208 -0.0688255877016934 1.17454425357131 -0.0814040571782098 0.0221144511303801 0.486517924868364 -1.50378267686585 -0.55 2.1 0.25 -0.563398163798097 -1.56323152490458 1.27756485030273 0.341212972441101 0.119027781084105 -0.801453725966307 -0.456273160822403 4.78094920687822 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.41489419973524 0.674490759476595 NA NA -1.31115462801888 -0.5 -0.5 RV0696 0 NA NA NA NA NA -1.06498540969989 2.03669758743913 1.34898151895319 -0.44966050631773 -1.08447533876629 0.42320988829904 0.47611112433642 NA 1.74574078923354 -0.02645061801869 0.47611112433642 -0.967747611422941 -0.381233907530249 1.13820315661675 0.611257250775664 -1.28574801025226 -0.779879940644813 -1.26467017401862 -1.05389181168218 -1.32790368271955 0.442634560906516 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