[+] Show/hide bicluster #370 rows and columns.
bicluster 370
Mycobacterium tuberculosis H37Rv
14x239
[+] Show/hide bicluster #370 rows (genes).
bicluster 370 genes
Mycobacterium tuberculosis H37Rv
14
[+] Show/hide bicluster #370 rows (short gene names).
bicluster 370 short names
Mycobacterium tuberculosis H37Rv
14
short_name
[+] Show/hide bicluster #370 rows (long gene names).
bicluster 370 long names
Mycobacterium tuberculosis H37Rv
14
long_name
[+] Show/hide bicluster #370 rows (NCBI RefSeq gene IDs).
bicluster 370 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
26
[+] Show/hide bicluster #370 gene upstream sequences.
bicluster 370 upstream sequences
Mycobacterium tuberculosis H37Rv
14
upstream
[+] Show/hide bicluster #370 columns (arrays; conditions).
bicluster 370 arrays
Mycobacterium tuberculosis H37Rv
239
[+] Show/hide bicluster #370 ratios.
bicluster 370 ratios
Mycobacterium tuberculosis H37Rv
14x239
GENES 2885:::Strain.1843...replicate.2 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.3 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.4 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4101:::H37Rv.Day14.1 4101:::NRP.Day12..1 4101:::NRP.Day12..2 4107:::DIPED..100ug.mL..DMSO..12h..1 4107:::X0.2ug.mL.PA824.DMSO..6h..2 4107:::X0.4ug.mL.INHvsEtOH..6h 4107:::X0.4ug.mL.PA824.DMSO..6h..2 4107:::X0.4ug.mL.PA824.DMSO..6h..4 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X100ug.mL.Cphx.DMSO..6h 4107:::X1ug.mL..124196vsDMSO..6hA 4107:::X20ug.mL.chlorprmz.DMSO..6h..1 4107:::X40ug.mL.EtavsEtOH..6h 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3 4583:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4583:::X5ug.ml.KCN.vs.DMSO.6hrs.rep.1 4615:::AA_10uM_2h_T0_01 4615:::AA_30uM_10.min_06 4615:::AA_30uM_1h_01 4615:::AA_30uM_1h_05 4615:::AA_30uM_1h_07 4615:::AA_30uM_1h_08 4615:::AA_30uM_30min_01 4615:::AA_30uM_30min_03 4615:::AA_30uM_4h_09 4615:::AA_3uM_2h_T0_01 4615:::AA_60uM_24h_01 4615:::AA_60uM_2h_T0_01 4615:::aceatate.induction.3 4615:::Acetate.3mM.60m.03 4615:::CK_AA_NA.2h 4615:::CK_LA_2h 4615:::CK_LA_2h.2 4615:::CK_LA_2h.3 4615:::CK_OA_NA_2h.02 4615:::CK.AA.Na.2h 4615:::CK.for.AA.NA.24h 4615:::CK.for.AA.NA.4h 4615:::CK.for.MDG.24h.PA.NA 4615:::CK.for.MDG.4h.PA.NA 4615:::CK.LA.2h.4 4615:::CK.MDG.2h.for.PA.NA.2 4615:::CK.PA.NA.101801.2 4615:::CK.PA.NA.2h.02..100901 4615:::CK.PA.NA.2h.3..101801 4615:::ETYA_10uM.AA_1h_02 4615:::ETYA_30uM_10min.02 4615:::ETYA_30uM_10min.04 4615:::ETYA_30uM_10min.05 4615:::L2A_30uM_1h_01 4615:::L2A_30uM_1h_04 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_1h_07 4615:::L2A_30uM_2h_04 4615:::L2A_30uM_30min_01 4615:::L2A_30uM_30min_05 4615:::L2A_30uM_4h_T0_01 4615:::LAA_50uM_10min_01 4615:::LAA_50uM_30min_01 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261.3524_01 4615:::MDA_1254.pMV261.3524_02 4615:::MDA_1254.pMV261.3524_03 4615:::MDG_1254.pMV261_01 4615:::MDG_1254.pMV261_02 4615:::MDG_1254.pMV261_04 4615:::MDG_1254.pMV261.3524_01 4615:::MDG_1254.pMV261.3524_02 4615:::MDG_1254.pMV261.3524_03 4615:::MDG_1254.pMV261.3524_04 4615:::MTB1254_Bottom_21D_01 4615:::MTB1254_Bottom_21D_02 4615:::MTB1254_Bottom_21D_03 4615:::MTB1254_Bottom_21D_04 4615:::MTB1254_Bottom_42D_03 4615:::MTB1254_Bottom_42D_04 4615:::MTB1254_Pellicle_42D_01 4615:::MTB1254_Pellicle_42D_02 4615:::MTB1254_Pellicle_56D_01 4615:::MTB1254_Pellicle_56D_02 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.0485.1._OA_30m_01 4615:::MTB1254.0485.14._01 4615:::MTB1254.3219.2._01 4615:::MTB1254.3524.1._OA_10min_01 4615:::MTB1254.3524.1._OA_10min_02 4615:::MTB1254.3524.1._OA_10min_03 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254.3524.1.T0_WtT0_01 4615:::MTB1254.B4.1._OA_10MIN_01 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_30MIN_01 4615:::MTB1254.B4.1._PA_30MIN_03 4615:::MTB1254.B4.1._PA_30MIN_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_02 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._OA_30MIN_04 4615:::MTB1254.B4.1.Compl._PA_30MIN_02 4615:::MTB1254.Rv0465c.4._PA50.OA30_30m_01 4615:::MTB1254TA1_OA.30min_03 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB1254vsMTB1254B4 4615:::OA_50uM_10min_01 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_06 4615:::OA_50uM_1h_02 4615:::OA_50uM_1h_04 4615:::OA_50uM_1h_09 4615:::OA_50uM_1h_10 4615:::OA_50uM_24h_02 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h_07 4615:::OA_50uM_2h_10 4615:::OA_50uM_30min_02 4615:::OA_50uM_30min_04 4615:::OA_50uM_4h_03 4615:::PA_10uM_10min_02 4615:::PA_50uM_10.min_02 4615:::PA_50uM_10min_01 4615:::PA_50uM_10min_05 4615:::PA_50uM_10min_06 4615:::PA_50uM_10min_07 4615:::PA_50uM_1h_03 4615:::PA_50uM_1h_04 4615:::PA_50uM_1h_06 4615:::PA_50uM_1h_07 4615:::PA_50uM_1h_09 4615:::PA_50uM_1h_12 4615:::PA_50uM_2h_T0_01 4615:::PA_50uM_30.min_05 4615:::PA_50uM_30min_03 4615:::PA_50uM_3d_02 4615:::PA_50uM_3d_03 4615:::PA_50uM_3d_04 4615:::PA_50uM_4h_02 4615:::PA_50uM.0.5.BSA_1h_01 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_50uM.MAPP_30m_01 4615:::PA_50uM.OA_10uM_12h_01 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_10uM_2h_02 4615:::PA_50uM.OA_10uM_30min_03 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_30uM_24h_02 4615:::PA_50uM.OA_30uM_2h_02 4615:::Rv_OA30_30mim_01 4615:::Rv_Rv3524.1_OA_10min 4615:::Rv_TA_OA30_30mim_01 4615:::Rv_TA_OA30_30mim_03 4615:::Rv.MT90_100903_01 4615:::Rv.MT96_100603_01 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Starvation_1254_12h_01 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_12h_03 4615:::Starvation_1254_24h_02 4615:::Starvation_1254_24h_05 4615:::Starvation_1254_24h_06 4615:::Starvation_1254_24h_07 4615:::Starvation_1254_24h_08 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_3d_04 4615:::Starvation_1254_5d_01 4615:::Starvation_1254_5d_02 4615:::Starvation_1254_5d_03 4615:::Starvation_1254_5d_04 4615:::Starvation_1254_6h_01 4615:::Starvation_1254_6h_05 4615:::Starvation_1254_6h_07 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_1254_OA50_24h_01 4615:::Starvation_1254_OA50_24h_02 4615:::Starvation_1254_OA50_24h_03 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_OA50_5d_02 4615:::Starvation_1254_OA50_5d_03 4615:::Starvation_1254_OA50_5d_04 4615:::Starvation_1254_OA50_6h_01 4615:::Starvation_1254_OA50_6h_02 4615:::Starvation_1254_OA50_6h_04 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::Starvation_1254_PA50.OA30_6h_01 4615:::Starvation_1254_PA50.OA30_6h_02 4615:::Starvation_1254_PA50.OA30_6h_03 4615:::Starvation_1254_PA50.OA30_6h_04 4615:::Starvation_OA50_24h_04 4615:::Starvation_OA50_6h_01 4615:::Starvation_OA50_6h_02 4615:::Starvation_OA50_6h_03 4615:::TBD098 4615:::TBD1111 4615:::TBD1115 4615:::TBD625 4615:::TBD662 4615:::TBD663 4615:::TBE055 4615:::TBE733 4615:::TBE736 4615:::TBF466 4615:::Test_261B4.1 4615:::Test_361.1 4615:::Test_361.3 4615:::Test.1 4615:::Test.6 4615:::WM_1254_vs_1254whiB4_20day 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.3 4731:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4731:::X5ug.ml.Streptomycin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3 4815:::H37Rv.reaeration.for.12hrs.rep.3 4815:::H37Rv.reaeration.for.4hrs.rep.5 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages
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[+] Show/hide bicluster #370 motif PSSM #1. bicluster 370 motif PSSM #1 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 0.166667 0 0.833333 0
2 0.333333 0 0.5 0.166667
3 0 0.166667 0.666667 0.166667
4 0.666667 0.333333 0 0
5 0.666667 0 0 0.333333
6 0 0.166667 0.166667 0.666667
7 0 0.166667 0 0.833333
8 0 0 1 0
9 0 0.666667 0.166667 0.166667
10 0 0.333333 0 0.666667
11 0 0 0.166667 0.833333
12 0.666667 0 0.333333 0
13 0 0 0.833333 0.166667
14 0 0 0.333333 0.666667
15 0.166667 0.333333 0 0.5
16 0 0 0.833333 0.166667
17 0.333333 0.5 0.166667 0
18 0.5 0 0 0.5
19 0 1 0 0
20 0.5 0 0 0.5
21 0 0.833333 0 0.166667
22 0.333333 0 0 0.666667
23 0.833333 0 0.166667 0 [+] Show/hide bicluster #370 motif PSSM #2. bicluster 370 motif PSSM #2 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0 0 0 1
2 0 0 1 0
3 0 1 0 0
4 0.25 0.5 0 0.25
5 0.25 0 0.75 0
6 0.5 0 0 0.5
7 0 0 0 1
8 0.5 0.5 0 0
9 0 0 1 0
10 0.25 0 0.75 0
11 0 1 0 0
12 0 0 0 1
13 0.25 0 0.75 0
14 0 1 0 0
15 1 0 0 0 |