Bicluster 384 (zzz

GENES 2867:::H37Ra..7H9.roll.replicate.4 2867:::H37Ra..7H9.shake.replicate.3 2867:::H37Ra..Youman.media.replicate.2 2867:::H37Rv..Youman.media.replicate.1 2867:::H37Rv..Youman.media.replicate.2 2885:::Strain.1254...replicate.4 2885:::Strain.1843...replicate.2 2885:::Strain.1843..replicate.4 2885:::Strain.9700665..replicate.4 2885:::Strain.H37Ra..replicate.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.rep.1 4062:::MTB1254.Day.0.rep.2 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2b 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1 4100:::H37Rv.0.2..Oxygen..2h..1 4101:::NRP.Day14..8 4101:::NRP.Day14..9 4107:::EMB..10ug.mL..DMSO..12h 4107:::H2O2.4mM.vs.ctrl.12h.1 4107:::H2O2.4mM.vs.ctrl.8h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.12h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.2 4107:::Palmitate.Glucose..1 4107:::Palmitate.Glucose..2 4107:::pH5.6vspH6.8..4h. 4107:::UV.20J.vs.ctrl.8h.1 4107:::UV.40J.vs.ctrl.8h.1 4107:::WT.t.0h.WT.t.6h..1 4107:::WT.t.0h.WT.t.6h..2 4107:::X0.02mM.GSNOvsDMSO..6h 4107:::X0.05mM.palmitatevs10mM.gluc 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.12mg.mL.PZA.pH5.6..5h. 4107:::X0.1mM.GSNOvsDMSO..4h 4107:::X0.1mM.GSNOvsDMSO..6h 4107:::X0.1mM.GSNOvsDMSO..6h.A 4107:::X0.2mg.mL.AmpvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2mg.mL.AmpvsEtOH..6hB 4107:::X0.2mg.mL.AmpvsEtOH..6hC 4107:::X0.2mg.mL.TLMvsEtOH..6h 4107:::X0.2ug.mL.Mtmvsctrl..2h.C 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.2ug.mL.PA824.DMSO..6h..2 4107:::X0.4ug.mL.PA824.DMSO..6h..1 4107:::X100uM.Dipyridylvsctrl..6h 4107:::X100uM.DipyridylvsCtrl..6hA 4107:::X10mM.Succinate.10mM.Gluc..1 4107:::X10mM.succinatevs10mM.glucose 4107:::X10ug.mL.clotrimvsEtOH..6h 4107:::X10ug.mL.ClotrimvsEtOH..6hA 4107:::X10ug.mL.EconazolevsEtOH..6h 4107:::X10ug.mL.EconazolevsEtOH..6hA 4107:::X10ug.mL.menadionevsDMSO..6h 4107:::X10ug.mL.methoxatinvsDMSO..6h.A 4107:::X10ug.mLmnd.Dubos.vsDMSO.6h 4107:::X1ug.mL..124196vsDMSO..6h 4107:::X20mJ.UVvsctrl..6h. 4107:::X20ug.mL.methoxatinvsDMSO..6h 4107:::X20ug.mL.Prcp.6778.DMSO..6h..1 4107:::X24ug.mL.cltrmazole.DMS..6h..2 4107:::X24ug.mL.cltrmazole.DMS..6h..3 4107:::X24ug.mL.Econazole.DMSO..6h..1 4107:::X24ug.mL.Econazole.DMSO..6h..2 4107:::X250uM.DeferroxaminevsDMSO..6h 4107:::X2mM.ZnSO4.DMSO..6h 4107:::X2mMb.mercaptoethanolvsDMSO.6h 4107:::X40mJ.UV.ctrl..6h. 4107:::X4mM.H2O2.ctrl..2h...2 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X50ug.mL.VerapamilvsDMSO..6h 4107:::X50uM.NigericinvsDMSO..6h.A 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.1.day.rep.7 4363:::H37Rv.hypoxia.1.day.rep.9 4363:::H37Rv.hypoxia.4.day.rep.3 4363:::H37Rv.hypoxia.4hr.rep.6 4363:::H37Rv.hypoxia.4hr.rep.7 4363:::H37Rv.hypoxia.7.day.rep.3 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.7.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.7 4363:::H37Rv.hypoxia.8hr.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.4 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4364:::H37dosR.mutant.hypoxia.12hr.rep.3 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4364:::H37dosR.mutant.hypoxia.8hr.rep.2 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.2 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.3 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.2 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.5 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Purified.Human.SP.A.Coated.2hrs.rep2 4575:::Purified.Surfactant.Lipids.2hrs.rep.2 4575:::Whole.Lung.Surfactant.2hrs.rep.3 4575:::Whole.Lung.Surfactant.30min.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.4 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4615:::AA_10uM_10.min_01 4615:::AA_30uM_24h_03 4615:::AA_30uM_30min_05 4615:::AA_30uM_4h_01 4615:::AA_30uM_4h_04 4615:::AA_30uM_4h_08 4615:::AA_3uM_10.min_01 4615:::AA_60uM_2h_T0_01 4615:::CK_PA.Na.24h.1 4615:::CK.2.2h.for.OA.NA.and.PA.NA 4615:::CK.AA.Na.2h 4615:::CK.for.AA.Na.4h.2 4615:::CK.for.MDG.24h.PA.NA 4615:::CK.for.MDG.OA.4h 4615:::CK.for.MDG.OA.Na.24h 4615:::CK.for.OA.4h.1 4615:::CK.PA.NA.101801.2 4615:::CK.PA.Na.4h.2 4615:::Glucose_20mM_1h.OA_50uM_10min 4615:::Glucose_40mM_1h.OA_50uM_10min 4615:::Glucose_5mM_10min_01 4615:::L2A_30uM_30min_07 4615:::L2A_30uM_4h_03 4615:::MDA_1254.pMV261_03 4615:::MDG_1254.pMV261_01 4615:::MDG_1254.pMV261_03 4615:::MDG_1254.pMV261.3524_01 4615:::MDG_1254.pMV261.3524_03 4615:::MDG_1254.pMV261.3524_04 4615:::MTB1254_Bottom_14D_02 4615:::MTB1254_FA5_10min_01 4615:::MTB1254_INH_20MIN 4615:::MTB1254_Pellicle_21D_03 4615:::MTB1254_SDS_90MIN_02 4615:::MTB1254_SDS_90MIN_04 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254whiB4_SDS_90MIN_02 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::MTB1370_PA50_1h_04 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_04 4615:::OA_50uM_10min_07 4615:::OA_50uM_10min_08 4615:::OA_50uM_10min.Glu_40mM_20min_01 4615:::OA_50uM_24h_03 4615:::OA_50uM_24h_04 4615:::OA_50uM_24h_05 4615:::OA_50uM_24h_06 4615:::OA_50uM_30min_01 4615:::OA_50uM_30min_09 4615:::OA_50uM_4h_05 4615:::PA_300uM_4h_T0_01 4615:::PA_50uM_12h_04 4615:::PA_50uM_12h_05 4615:::PA_50uM_1h_01 4615:::PA_50uM_1h_07 4615:::PA_50uM_1h_09 4615:::PA_50uM_24h_03 4615:::PA_50uM_30min_03 4615:::PA_50uM_30min_08 4615:::PA_50uM_3d_02 4615:::PA_50uM_3d_03 4615:::PA_50uM_8h_05 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_10uM_30min_03 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_30uM_24h_01 4615:::PA_50uM.OA_30uM_24h_02 4615:::Rv_Rv3524.1 4615:::Rv.MT106_100503_01 4615:::Rv.MT71_100503_02 4615:::Rv.MT90_100503_01 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Rv.p0485.1._OK 4615:::Rv.pMV0481.1. 4615:::Rv.pMV0481.2. 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::TBD040 4615:::TBD094 4615:::Test_261B4.1 4615:::Tet_50ng_30M_01 4615:::WT_65.4_SDS_01 4615:::WT_85.1_OA_10min_02 4615:::WT_85.1_PA_10min_02 4615:::WT_WhiB4_PA_10min_01 4615:::X2.2..Dipyridyl_1mM.Dpd.AA_50uM_01 4615:::X7H9_MTB1254_OA50_10M_01 4615:::X7H9_MTB1254.3524.1._OA100_10M_01 4615:::X7H9MTB1254_SDS_90MIN_01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2 4703:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.2 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.5 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.1 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages...IFNg.for.24hrs RV0129C -1.775 0.975 -2.275 1.025 1.725 0.611747433013656 -2.49404722690183 -0.0156858316157348 -1.23918069764305 0.0156858316157348 0 0.582514746820696 0.0919760126558993 NA 0.0613173417705995 0.122634683541199 1.13437082275609 1.31832284806789 -0.3 -0.432692185324608 0.75 0.0196072895196686 -0.00392145790393361 -0.592458099540252 0.282556939780736 -0.856785559335134 -1.24871937903099 -1.44924365887539 0.264327459794882 0.610687579526107 0.41927803967464 -0.72006445944123 -0.619802319519033 0.674490759476595 0.838556079349281 -0.191409539851466 0.856785559335135 0.555999139568545 0 0.92970347927855 0.0273442199787809 -0.200524279844393 -0.236983239816101 0.127606359900978 1.33075203896734 1.41278469890368 0.756523419412938 0.902359259299769 1.25783411902392 -0.382819079702932 -0.72006445944123 0.592458099540253 0.701834979455376 -0.30078641976659 -0.191409539851466 NA 1.03908035919367 0.337245379738298 0.382819079702932 0.154950579879758 0.246097979809028 -0.674490759476595 0.51042543960391 -0.601572839533179 0.0638031799504887 -0.966162439250258 0.428392779667567 -0.41927803967464 0.0273442199787809 0.0729179199434157 0.118491619908051 NA -0.291671679773663 -0.100262139922197 -0.164065319872685 -1.2851783390027 -0.774752899398792 -1.17580145908758 -1.18491619908051 -0.0638031799504887 -0.109376879915124 -0.828786031252287 -0.674490759476595 0.101394035738312 NA -0.092577163065415 0.797926976897149 0.824377594915839 -1.01394035738312 -0.934588503327047 -0.797926976897149 -0.533420796710249 0.440843633644833 -0.710949719448303 -0.979834549239648 -0.756523419412938 0.943375589267941 1.622423718741 1.34898151895319 -0.255212719801955 -1.0481950991866 0.961605069253794 -0.252934034803723 0.937706665613803 -0.7935185405607 2.69796303790638 0.674490759476595 -1.53413584508402 0.23805556216821 0.31740741622428 0.63481483244856 0.2645061801869 -0.157381177211206 1.13164560756629 0.112415126579432 0.427177481001844 0.337245379738298 -0.816883253143877 -0.78986417886075 -1.43695857453709 0.0729179199434157 0.656261279490741 0.200524279844393 -0.60157283953318 -0.0729179199434157 -0.164065319872685 0.145835839886831 -1.23960463903807 NA 1.33075203896734 -0.328130639745371 0.0364589599717079 0.0911473999292696 NA 0.200524279844393 -0.546884399575618 0 1.02085087920782 0.473966479632202 0.346360119731225 0.60157283953318 0.437507519660494 0.0729179199434157 0.583343359547326 0.41927803967464 0.218753759830247 0.401048559688786 0.656261279490741 0.0546884399575618 -0.911473999292696 0.273442199787809 0.0364589599717079 -0.364589599717078 -0.638031799504887 -0.60157283953318 0.984391919236112 -0.619802319519033 -0.856785559335134 -0.92970347927855 -0.783867639391719 0.145835839886831 0.164065319872685 0.765638159405865 1.1484572391088 0.346360119731225 0.765638159405865 0.437507519660494 0.382819079702932 0.492195959618056 0.765638159405865 0.218753759830247 0.437507519660494 1.13022775912294 -1.49481735884002 -1.11199827913709 -0.0546884399575618 -0.820326599363427 -0.528654919589764 0.546884399575618 0.291671679773663 -1.69534163868441 0.145835839886831 -0.364589599717078 -1.03908035919367 -1.34898151895319 0.182294799858539 0.838556079349281 0.291671679773663 0.346360119731225 0.309901159759517 0.638031799504887 -0.0729179199434157 0.273442199787809 -0.783867639391719 0.0182294799858539 1.16668671909465 0.218753759830247 1.16668671909465 1.07553931916538 0.820326599363427 -1.91409539851466 -1.1484572391088 -0.236983239816101 -0.218753759830247 0.382819079702932 -0.0364589599717079 0.127606359900977 0.60157283953318 1.34898151895319 0.911473999292696 1.1484572391088 0.109376879915124 -0.0546884399575618 -0.0546884399575618 -4.48477189195842 0.863821498978797 -0.130164883407764 0.523876318040074 -0.250525139234164 1.7922183037521 -0.520321443024802 -0.173440481008267 -0.331328794128854 -1.53831225845539 -1.58564494333094 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