Bicluster 389 (zzz

GENES 2867:::H37Rv..7H9.shake.replicate.3 2885:::Strain.9800608..replicate.2 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.6 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4084:::High.iron.wt.vs.high.iron.ideR.KO.2a 4100:::H37Rv.0.2..Oxygen..2h..4 4107:::H2O2.4mM.vs.ctrl.8h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.1 4107:::pH4.8vspH6.8..5.5h. 4107:::pH5.6vspH6.8..16h. 4107:::pH5.6vspH6.8..2h.A 4107:::pH5.6vspH6.8..4h. 4107:::pH5.6vspH6.8..7h. 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051. 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.Nam.pH5.6..2h..1 4107:::X0.12mg.mL.Nam.pH5.6..2h..2 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.2ug.mL.Mtmvsctrl..2h. 4107:::X0.2ug.mL.Mtmvsctrl..2h.A 4107:::X0.5ug.mL..111891vsDMSO.6h 4107:::X0.5ug.mL..121940vsDMSO.6h 4107:::X0.5ug.mL..121940vsDMSO.6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hB 4107:::X0.5ug.mL.CeruleninvsDMSO..6hC 4107:::X0.5ug.mL.CervsEtOH..6hA 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X1.2mg.mL.PZAvspH5.6..4h.B 4107:::X1.2mg.mL.PZAvspH5.6..6h. 4107:::X10ug.mL.PA.1vsDMSO..6hB 4107:::X10ug.mL.PA.21vsDMSO..6hA 4107:::X10ug.mL.RoxvsEtOH..6h 4107:::X10ug.mL.RoxvsEtOH..6hA 4107:::X10ug.mL.TetvsEtOH..6h 4107:::X10ug.mL.TriclosanvsDMSO..6hB 4107:::X10uM.CCCP.DMSO..6h 4107:::X10uM.ValinomycinvsDMSO..6h 4107:::X12.5ug.mL.AntimycinvsDMSO..6h 4107:::X150uM.Deferroxaminevsctrl..6hA 4107:::X1ug.mL..111891vsDMSO..6h 4107:::X1ug.mL..111895vsDMSO..6hA 4107:::X20ug.mL.Prcp.6776.DMSO..6h..1 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X25ug.mLCPZ.0.1mMGSNOvsDMSO.A 4107:::X2ug.mL..111891vsDMSO..6h 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X30ug.mL.RoxvsEtOH..6hA 4107:::X30ug.mLProcept6776vsDMSO.6h 4107:::X30ug.mLProcept6776vsDMSO.6hA 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X50ug.mL.PA.1vsDMSO..6h 4107:::X50ug.mL.RoxvsEtOH..6h 4107:::X50ug.mL.Triclosan.EtOH 4107:::X50ug.mLAntimycinAvsDMSO..6h 4107:::X50ug.mLAntimycinAvsDMSO..6hB 4107:::X5ug.mL.CapvsEtOH..6h 4107:::X5ug.mL.CapvsEtOH..6hA 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X5ug.mLProcept.6778vsDMSO.6hA 4107:::X9ug.mLAscidideminNpvsDMSO.6hA 4107:::X9ug.mLNaturalproductvsDMSO.6h 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.4.day.rep.2 4363:::H37Rv.hypoxia.4hr.rep.5 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.2 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6 4570:::MTB.strain.TB294.Ctrl.vs.SigA.overexpression.rep1 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.4 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.3 4615:::AA_30uM_10m_01 4615:::AA_30uM_10min_02 4615:::AA_30uM_10min_03 4615:::AA_30uM_1h_01 4615:::AA_30uM_1h_07 4615:::AA_30uM_30min_01 4615:::AA_30uM_30min_06 4615:::AA_60uM_24h_02 4615:::Acetate.3mM.30m.01 4615:::CK_AA_NA.2h 4615:::ETYA_30uM_10min.03 4615:::L2A_30uM_10min_02 4615:::L2A_30uM_10min_03 4615:::L2A_30uM_10min_08 4615:::L2A_30uM_1h_02 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_30min_02 4615:::L2A_30uM_30min_04 4615:::L2A_30uM_30Min_06 4615:::LAA_50uM_10min_01 4615:::LAA_50uM_30min_01 4615:::MTB1248_PA50_1h_01 4615:::MTB1248_PA50_1h_02 4615:::MTB1254.0485.1._OA_10m_02 4615:::MTB1254.0485.1._PA_10m_02 4615:::MTB1254.0485.1._PA_12h_01 4615:::MTB1254.0485.1._PA_12h_02 4615:::MTB1254.0485.1._PA_12h_04 4615:::MTB1254.0485.1._PA_4h_01 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.1683._01 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_03 4615:::MTB1254.3524.1._PA_12h_04 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254.B4.1._PA_4h_01 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_01 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_03 4615:::MTB1254.B4.1.Compl._PA_4h_04 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB1254.B4.1.Compl._PA_4h_06 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_02 4615:::MTB1254.Rv3524.2.compl._PA50.OA30_2h_02 4615:::MTB1370_PA50_1h_02 4615:::MTB6548_PA50_1h_01 4615:::MTB6548_PA50_1h_02 4615:::MTB889_PA50_1h_01 4615:::MTB889_PA50_1h_02 4615:::MTB889_PA50_1h_03 4615:::OA_100uM_2h_T0_01 4615:::OA_50uM_10min_04 4615:::OA_50uM_1h_02 4615:::OA_50uM_1h_07 4615:::OA_50uM_1h_10 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h_08 4615:::OA_50uM_30min_02 4615:::OA_50uM_30min_09 4615:::OA_50uM_4h_07 4615:::PA_100uM_24h_01 4615:::PA_100uM_24h_T0_01 4615:::PA_100uM_2h_03 4615:::PA_100uM_2h_04 4615:::PA_100uM_2h_T0_02 4615:::PA_100uM_2h_T0_05 4615:::PA_50uM_10min_01 4615:::PA_50uM_10min_09 4615:::PA_50uM_10min_10 4615:::PA_50uM_12h_01 4615:::PA_50uM_12h_02 4615:::PA_50uM_12h_03 4615:::PA_50uM_12h_05 4615:::PA_50uM_1h_01 4615:::PA_50uM_24h_01 4615:::PA_50uM_24h_03 4615:::PA_50uM_24h_04 4615:::PA_50uM_24h_06 4615:::PA_50uM_24h_10 4615:::PA_50uM_2h_02 4615:::PA_50uM_2h_03 4615:::PA_50uM_2h_05 4615:::PA_50uM_2h_06 4615:::PA_50uM_2h_07 4615:::PA_50uM_2h_08 4615:::PA_50uM_2h_T0_02 4615:::PA_50uM_30min_01 4615:::PA_50uM_30min_10 4615:::PA_50uM_4h 4615:::PA_50uM_4h_01 4615:::PA_50uM_4h_02 4615:::PA_50uM_4h_03 4615:::PA_50uM_4h_04 4615:::PA_50uM_4h_05 4615:::PA_50uM_4h_06 4615:::PA_50uM_4h_07 4615:::PA_50uM_8h_01 4615:::PA_50uM_8h_02 4615:::PA_50uM_8h_04 4615:::PA_50uM_8h_05 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.MAPP_4h_01 4615:::PA_50uM.OA_10uM_24h_02 4615:::PA_50uM.OA_30uM_24h_02 4615:::PA_50uM.OA_30uM_4h_05 4615:::Rv_OA30_30mim_01 4615:::Rv.3524.2._01 4615:::Rv.MT106_100503_01 4615:::Rv.MT96_100503_01 4615:::Rv.pMV0481.2. 4615:::Starvation_1254_PA50_6h_01 4615:::Starvation_1254_PA50_6h_03 4615:::Starvation_1254_PA50_6h_04 4615:::TBD099 4615:::Tet_50ng_30M_01 4615:::X2.BA_100uM_30min_01 4615:::X7H9_MTB1254.3524.1._OA100_10M_01 4615:::X7H9_MTB1254.3524.1._OA50_10M_01 4615:::X7H9Cy3.MDGCy5.01 4615:::X7H9Cy3.MDGCy5.02 4615:::X7H9Cy3.MDGCy5.03 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.3 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1 4703:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1 4815:::H37Rv.reaeration.for.4hrs.rep.4 4815:::H37Rv.reaeration.for.4hrs.rep.8 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.1 Raghavan_Nature2008:::WT.TB.rep3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr RV0190 0.432882129216322 -0.116738785294026 0.578134936694225 -0.154950579879758 -0.738293939427084 -0.191409539851466 2.88937257775785 2.01435753843686 0.884129779313915 -0.519540179596837 -0.246097979809028 0.35 -0.35 1.27722718283866 -0.625 -0.370599318393734 -0.0148239727357494 0.933910282352209 -0.696726718580219 -0.296479454714987 -0.296479454714987 -0.133415754621744 -0.68190274584447 -0.281655481979238 1.43792535536769 0.815318500466214 0.370599318393734 -0.0444719182072481 0.800494527730465 1.36380549168894 -0.563310963958475 NA -0.607782882165723 -0.103767809150245 0.0296479454714987 -0.118591781885995 -0.385423291129483 -0.415071236600982 0.844966445937713 0.429895209336731 0.563310963958475 0.607782882165723 -0.340951372922235 -0.711550691315969 2.81655481979238 2.74243495611363 2.17912399215515 -0.177887672828992 NA NA -0.622606854901472 -0.726374664051718 -0.192711645564741 0.68190274584447 NA -1.31933357348169 -1.2007417915957 -0.874614391409211 -1.31933357348169 NA -0.637430827637222 2.52007536507739 2.59419522875614 0.90426233688071 0.800494527730465 0 0.163063700093243 1.74922878281842 NA -1.12662192791695 -1.06732603697395 0.948734255087958 1.00803014603096 -1.03767809150245 -1.2007417915957 -0.207535618300491 -0.281655481979238 -0.984756508835829 1.00723953415172 0.23382346328522 3.06115036993224 0.175 -0.370969917712128 1.28153244300553 2.00702128429621 0.674490759476595 -0.374717088598108 -0.819542535708121 0.485923450375612 -0.826795124519697 -0.313156424042705 -0.144533734173556 0.481779113911854 -0.650401803781003 -0.433601202520668 -0.192711645564742 -0.505868069607446 0.722668670867781 0.168622689869149 0.0240889556955927 -0.168622689869149 0.120444778477963 0.0481779113911854 -0.26497851265152 -0.36133433543389 0.819024493650151 0.120444778477963 0.240889556955927 0.385423291129483 -0.62631284808541 -0.216800601260334 -0.337245379738298 1.18035882908404 0.963558227823707 -0.313156424042705 0.168622689869149 1.83076063286504 1.39715943034438 1.51760420882234 1.87893854425623 1.54169316451793 2.16800601260334 1.80667167716945 -10 2.36071765816808 2.40889556955927 3.20383110751383 2.14391705690775 1.37307047464878 2.74614094929757 3.22792006320942 2.3125397467769 -0.0481779113911854 2.55342930373282 2.19209496829893 2.40889556955927 3.05929737334027 2.86658572777553 0.289067468347112 -0.0722668670867781 0.674490759476595 1.75849376577827 1.68622689869149 2.16800601260334 1.85484958856064 2.09573914551656 0.192711645564741 0.0722668670867781 -0.819024493650152 -0.337245379738298 -0.674490759476595 -0.794935537954559 -0.337245379738298 0 -0.843113449345744 -0.240889556955927 3.37245379738298 2.55342930373282 0.9876471835193 0 1.39715943034438 0.554045980998632 0.26497851265152 0.529957025303039 -0.0481779113911854 2.09573914551656 2.74614094929757 1.95120541134301 2.04756123412538 0 1.58987107590912 -0.240889556955927 0.457690158216261 2.48116243664605 2.79431886068875 2.48116243664605 2.16800601260334 2.69796303790638 2.38480661386368 1.87893854425623 3.05929737334027 2.28845079108131 0.36133433543389 0.746757626563373 2.43298452525486 2.21618392399453 1.99938332273419 2.45707348095045 2.55342930373282 3.51698753155653 3.92649977838161 4.52872367077143 2.09573914551656 2.86658572777553 2.84249677207994 1.20444778477963 0.529957025303039 2.9629415505579 -0.192711645564742 -0.385423291129483 -0.0963558227823708 0 1.83076063286504 1.37307047464878 0.409512246825076 0.216800601260334 1.10809196199726 1.37307047464878 2.04756123412538 -0.144533734173556 -0.0963558227823708 -0.529957025303039 0.120444778477963 -0.192711645564742 3.87832186699042 3.68561022142568 4.14330037964194 0.0770846582258967 2.29326858222042 1.6037891391999 -1.46889098730459 -1.81363070881484 -2.27931360098987 -1.30246491485136 -1.95369737227703 1.64509941335755 1.34898151895319 -0.361921870938661 1.41478549548749 0.460627835740114 0.735808101247195 -0.0306586708852997 -1.37964018983849 NA -0.674490759476595 -0.935583956693342 0.892068423823884 2.75661440829565 -1.07918521516255 -0.359728405054184 -0.99480447920236 -0.756359416451326 0.514955519959676 2.065 RV0313 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