Bicluster 393 (zzz

GENES 2867:::H37Ra..7H9.shake.replicate.3 2867:::H37Ra..Dubos.media.replicate.3 2867:::H37Ra..Sauton.s.media.replicate.1 2867:::H37Ra..Sauton.s.media.replicate.4 2867:::H37Rv..7H9.shake.replicate.4 2867:::H37Rv..Sauton.s.media.replicate.4 2867:::H37Rv..Youman.media.replicate.2 2885:::H37Rv..7H9.roll.replicate.4 2885:::Strain.H37Ra..replicate.4 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2a 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.high.iron.ideR.KO.3a 4084:::High.iron.wt.vs.low.iron.wt.1a 4084:::High.iron.wt.vs.low.iron.wt.3a 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.1 4101:::NRP.Day12..3 4107:::DIPED..100ug.mL..DMSO..12h..2 4107:::DIPED..100ug.mL..DMSO..12h..3 4107:::Dubos.NRP.1vsDubos.log.phase 4107:::EMB.10ug.mL.vs.DMSO.12h.3 4107:::Mtm.0.2ug.mL.vs.ctrl.12h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.2 4107:::Palmitate.Glucose..2 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::pH4.8vspH6.8..2h. 4107:::pH4.8vspH6.8..2h.B 4107:::pH4.8vspH6.8..4h. 4107:::pH4.8vspH6.8..4h.A 4107:::pH4.8vspH6.8..4h.B 4107:::pH4.8vspH6.8..4h.C 4107:::pH4.8vspH6.8..5.5h. 4107:::pH4.8vspH6.8..5h. 4107:::pH5.2vspH6.8..5.5h. 4107:::pH5.6vspH6.8..16h. 4107:::pH5.6vspH6.8..4h. 4107:::pH5.6vspH6.8..4h.B 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::Succinate.7H9.based.medium..1 4107:::Succinate.7H9.based.medium..2 4107:::X.241..1ug.mL..DMSO..12h..1 4107:::X0.02mM.GSNOvsDMSO..6h 4107:::X0.05mM.Palmitate.10mM.Gluc..1 4107:::X0.05mM.palmitatevs10mM.gluc 4107:::X0.12mg.mL.Nam.pH5.6..2h..1 4107:::X0.12mg.mL.Nam.pH5.6..2h..2 4107:::X0.13mg.mL.TLMvsDMSO..6hA 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6hA 4107:::X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A 4107:::X0.1ug.mL.RifpvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2ug.mL.Mtm.ctrl..4h...1 4107:::X0.2ug.mL.Mtmvsctrl..2h. 4107:::X0.2ug.mL.Mtmvsctrl..2h.C 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.2ug.mL.Mtmvsctrl..6h. 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.5mM.DNP.DMSO..6h 4107:::X0.5ug.mL..121940vsDMSO.6h 4107:::X0.5uMValinomycin.70mMKClvsDMSO.6h 4107:::X1.2mg.mL.PZA.pH5.6..5h. 4107:::X100uM.Dipyridylvsctrl..6h 4107:::X10mM.Succinate.10mM.Gluc..1 4107:::X10mM.succinatevs10mM.glucose 4107:::X10ug.mL..59.DMSO..6h 4107:::X10ug.mL..59vsDMSO..6h 4107:::X10ug.mL.EMBvsDMSO..6h 4107:::X10ug.mL.menadionevsDMSO..6h 4107:::X10ug.mL.methoxatinvsDMSO..6h.A 4107:::X10ug.mL.OfloxvsDMSO..6h 4107:::X10ug.mL.PA.1vsDMSO..6h 4107:::X10ug.mL.PA.1vsDMSO..6hA 4107:::X10ug.mL.PA.1vsDMSO..6hB 4107:::X10ug.mLchlorpromazinevsctrl.6hA 4107:::X10ug.mLmdn.0.1mMGSNO.DMSO..2 4107:::X10ug.mLmnd.Dubos.vsDMSO.6h 4107:::X12ug.mLEthionamidevsEtOH.6hA 4107:::X1ug.mL..109vsDMSO..6h 4107:::X1ug.mL..111891.DMSO..12h..2 4107:::X1ug.mL..111891vsDMSO..6h 4107:::X1ug.mL..111895vsDMSO..6h 4107:::X1ug.mL..111895vsDMSO..6hA 4107:::X1ug.mL..121940.DMSO..12h 4107:::X1ug.mL..124196vsDMSO..6hA 4107:::X1uM.ValinomycinvsDMSO..6h 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X200uM.Dipyridylvsctrl..6hA 4107:::X20ug.mL.Cephalexin.Ctrl..6h..1 4107:::X20ug.mL.Cephalexin.Ctrl..6h..2 4107:::X20ug.mL.ethambutol.DMSO 4107:::X20ug.mL.methoxatinvsDMSO..6h 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..3 4107:::X25ug.mLCPZ.0.1mMGSNOvsDMSO.A 4107:::X2mM.DTNBvsDMSO 4107:::X2mM.ZnSO4.DMSO..6h 4107:::X2ug.mL..111895vsDMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X2ug.mL..111895vsDMSO..6hB 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X40mJ.UV.ctrl..6h. 4107:::X40ug.mL.5CL.pH5.6..4h..3 4107:::X40ug.mL.EtavsEtOH..6h 4107:::X4mM.H2O2.ctrl..4h...1 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X4mM.H2O2vsctrl..4h. 4107:::X4mM.H2O2vsctrl..4h.A 4107:::X50ug.mLAntimycinAvsDMSO..6h 4107:::X5ug.mL.CapvsEtOH..6h 4107:::X5ug.mL.CapvsEtOH..6hA 4107:::X5ug.mL.OfloxvsEtOH..6h 4107:::X5ug.mLStreptomycinvsEtOH.6h 4107:::X5ug.mLStreptomycinvsEtOH.6hA 4107:::X60ug.mL.ChlorprovsEtOH..6h 4107:::X7d.Dubos.NRP.1vsDubos.log.phase 4107:::X7d.Dubos.NRP.1vsDubos.log.phase.A 4107:::X9ug.mLAscidideminNpvsDMSO.6hA 4107:::X9ug.mLNaturalproductvsDMSO.6h 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.7.day.rep.3 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.7.day.rep.6 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4365:::H37Rv.diamide.1h.rep.3 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.6 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.2 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4575:::Purified.Surfactant.Lipids.30min.rep.2 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep.1 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.2 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4615:::AA_10uM_10min_01 4615:::AA_30uM_24h_03 4615:::AA_30uM_24h_04 4615:::AA_30uM_2h_06 4615:::Acetate.3mM.10m_04 4615:::Acetate.3mM.10m.02 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.4h.for.OA.NA.0.05mM 4615:::CK.for.MDG.OA.Na.24h 4615:::ETYA_30uM_10min.03 4615:::ETYA_30uM_10min.05 4615:::L2A_30uM_2h_02 4615:::MDA_1254.pMV261_01 4615:::MTB1254_Bottom_10D_01 4615:::MTB1254_Bottom_10D_02 4615:::MTB1254_Bottom_21D_01 4615:::MTB1254_FA5_1h_01 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254.3524.1.T0_WtT0_01 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::OA_50uM_1h_07 4615:::OA_50uM_24h_01 4615:::OA_50uM_24h_03 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h_05 4615:::OA_50uM_2h_08 4615:::OA_50uM_2h_09 4615:::OA_50uM_4h_03 4615:::OA_50uM.0.5.BSA_1h_01 4615:::PA_50uM_24h_T0 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_30min_08 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.MAPP_4h_01 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_10uM_2h_02 4615:::PA_50uM.OA_10uM_4h_03 4615:::Rv_OA30_30mim_01 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50.OA30_6h_02 4615:::TBE283 4615:::TBE735 4615:::WT_85.1_OA_10min_01 4615:::WT_85.1_PA_10min_01 4615:::X7H9Cy3.MDGCy5.01 4615:::X7H9Cy3.MDGCy5.02 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.H37Rv.rep.2 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.4 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.1 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Raghavan_Nature2008:::Complemented.espR.mutant..R...rep3 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Raghavan_Nature2008:::WT.TB.rep3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection RV0040C 0.291846963235065 0.395614772385311 -1.48517676846289 -1.26467017401862 -0.408585748529091 -0.408585748529091 0.849598937417634 1.02378061706269 2.49320691449384 0.464851739639275 -1.15757197910172 -2.12373441835198 1.23048989904514 -0.100262139922197 -0.282556939780736 -1.6237740505918 -1.64875518983168 0.824377594915839 -0.174867974679117 0.624528480996847 0.624528480996847 -0.601964871360832 0.425994163879955 0.366828307785517 -3.19495622909966 0.887487841416573 -0.627158074601045 -0.792822471665472 1.2424829779832 0.520659533631056 2.02347227842979 0.934820526292123 1.04131906726211 1.86964105258425 1.78680885405203 1.04131906726211 0.615324903382157 1.10048492335655 0.887487841416573 -0.473326848755505 1.30164883407764 1.34898151895319 -0.390494650223292 -3.17128988666189 -2.94645963350302 0.674490759476595 0.686323930695483 0.709990273133258 1.64481079942538 0.615324903382157 1.01765272482434 1.98797276477312 -2.34296790133975 -1.10048492335655 0.769156129227696 -0.780989300446584 1.06498540969989 0.828321985322135 -0.887487841416573 -0.603491732163269 -0.141998054626652 -0.733656615571033 -1.44364688870429 -1.45548005992318 1.62114445698761 -0.118331712188876 -1.53831225845539 -0.366828307785517 -0.0354995136566629 1.1478176082321 2.03530544964867 1.64481079942538 1.3371483477343 1.72764299795759 -2.56779815449862 1.12415126579433 -0.44966050631773 -0.508826362412168 -0.260329766815528 0.165664397064427 0.982153211167674 -2.70979620912527 NA 1.90514056624091 1.19515029310765 -1.9169737374598 0.224830253158865 -1.50281274479873 -1.62114445698761 -0.473326848755505 -0.118331712188876 -0.922987355073235 -2.05897179208645 -1.13598443701321 0.89932101263546 0.769156129227696 1.71580982673871 0.780989300446584 -0.141998054626652 -3.11212403056745 -2.88729377740858 0.875654670197685 1.08865175213766 -1.63297762820649 -1.5264790872365 -1.97613959355424 0.0709990273133258 -0.792822471665472 -0.721823444352146 2.16547033305644 -1.70397665551982 -0.970320039948786 -0.840155156541022 -1.2424829779832 -0.461493677536618 -0.473326848755505 0.757322958008809 0.721823444352146 -1.25431614920209 -0.934820526292123 -1.07681858091877 0.425994163879955 -3.49078550957185 -3.28962159885076 -2.0116391072109 -2.2956352164642 -0.768919465803319 0.0539592607581276 1.63226763793336 1.10616484554162 -1.11965466073115 -1.13314447592068 -0.242816673411574 -0.91456374166318 1.10890853676661 0.44966050631773 NA 0.0684265987874807 0.32258253714098 -0.674490759476595 -0.987298068219364 -0.283481623548134 -0.283481623548134 1.16325217938717 0.948197154626518 -0.674490759476595 -1.31348200529653 -1.71580982673871 0.698157101914371 0.0591658560944382 0.317863461362533 -1.77411508856268 -0.351552759484771 1.17571783761975 -0.457911157809799 1.24167617085464 -1.70155623413414 0.252934034803723 0.632335087009308 0.632335087009308 -2.29748414946715 0.505868069607447 0.52694590584109 0.737724268177526 1.41221502765412 0.421556724672872 0.632335087009308 0.948502630513962 -1.85484958856064 0.632335087009308 -1.18035882908404 -2.17101713206529 -2.128861459598 0.800957776878457 1.11712532038311 0.23185619857008 0.358323215971941 -2.14993929583165 -1.47544853635505 1.51760420882234 0.864191285579388 1.13820315661675 -1.55975988128963 -2.40287333063537 -1.13820315661675 -1.28574801025226 -0.379401052205585 1.03281397544854 -0.800957776878457 -1.20143666531769 -2.48718467556995 0.23185619857008 0.695568595710239 -1.37005935518683 -1.20143666531769 -0.590179414542021 -0.0632335087009308 -1.91808309726157 0.0843113449345744 0.990658302981249 0.800957776878457 2.25532847699987 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