[+] Show/hide bicluster #415 rows and columns.
bicluster 415
Mycobacterium tuberculosis H37Rv
9x243
[+] Show/hide bicluster #415 rows (genes).
bicluster 415 genes
Mycobacterium tuberculosis H37Rv
9
[+] Show/hide bicluster #415 rows (short gene names).
bicluster 415 short names
Mycobacterium tuberculosis H37Rv
9
short_name
[+] Show/hide bicluster #415 rows (long gene names).
bicluster 415 long names
Mycobacterium tuberculosis H37Rv
9
long_name
[+] Show/hide bicluster #415 rows (NCBI RefSeq gene IDs).
bicluster 415 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
16
[+] Show/hide bicluster #415 gene upstream sequences.
bicluster 415 upstream sequences
Mycobacterium tuberculosis H37Rv
9
upstream
[+] Show/hide bicluster #415 columns (arrays; conditions).
bicluster 415 arrays
Mycobacterium tuberculosis H37Rv
243
[+] Show/hide bicluster #415 ratios.
bicluster 415 ratios
Mycobacterium tuberculosis H37Rv
9x243
GENES 2867:::H37Ra..7H9.shake.replicate.1 2885:::H37Rv..7H9.roll.replicate.3 2885:::Strain.1843...replicate.3 2885:::Strain.3160..replicate.1 2885:::Strain.9802826..replicate.1 2885:::Strain.9802826..replicate.2 2885:::Strain.CDC1551..replicate.2 2885:::Strain.M3061a..replicate.1 2885:::Strain.M3061a..replicate.3 4055:::H37Rv.Vs.M.bovis.rep1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.5 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep3 4062:::MTB1254.Day.0.rep.2 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.3 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.4 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.1 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.3 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4084:::High.iron.wt.vs.high.iron.ideR.Complement.1b 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2a 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3a 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4084:::High.iron.wt.vs.low.iron.wt.2b 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.3 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.vs..MTB1254.rep5 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.3 4099:::H37Rv.hypoxia.2hr.rep.3 4099:::H37Rv.hypoxia.2hr.rep.4 4107:::pH5.6vspH6.8..2h.A 4107:::Rif.0.5ug.mL.vsDMSO.2.5hA 4107:::UV.60J.vs.ctrl.6h.1 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.PZAvspH5.6..6h. 4107:::X0.5ug.mL..111895vsDMSO.6h 4107:::X100uM.DCCD.DMSO..6h 4107:::X10ug.mL.ChlorprovsEtOH 4107:::X10ug.mL.EMBvsDMSO..6h 4107:::X10ug.mL.PA.1vsDMSO..6hA 4107:::X10ug.mL.PA.21vsDMSO..6hA 4107:::X10ug.mL.TRZ.DMSO..6h..2 4107:::X1mM.DNP.DMSO..6h..2 4107:::X1ug.mL..241vsDMSO..6h 4107:::X4mM.H2O2vsctrl..4h.A 4107:::X50ug.mLAntimycinAvsDMSO..6hA 4107:::X5ug.mL.AmivsEtOH..6h 4107:::X5ug.mL.CapvsEtOH..6h 4107:::X5ug.mL.OfloxvsEtOH..6h 4107:::X5ug.mLCFZ.0.1mMGSNOvsDMSO.A 4365:::H37Rv.diamide.1h.rep.4 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.2 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.2 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs..DS..rep.3 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.3 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages.rep.1 4615:::AA_10uM_2h_T0_01 4615:::AA_30uM_10min_02 4615:::AA_30uM_1h_02 4615:::AA_30uM_2h_01 4615:::AA_30uM_2h_07 4615:::AA_30uM_2h_08 4615:::AA_30uM_30min_09 4615:::AA_30uM_4h_05 4615:::Acetate.3mM.10m.06 4615:::CK_AA_NA.2h 4615:::CK_OA_NA_0.05_2h 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.LA.2h.4 4615:::CK.OA.Na.24h.1 4615:::ETYA_10uM.AA_1h_02 4615:::ETYA_30uM_10min.06 4615:::Glucose_5mM_10min_01 4615:::Glycerol_1._10M_01 4615:::Glycerol_1._30M_01 4615:::L2A_30uM_10min_01 4615:::L2A_30uM_10min_02 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_2h_05 4615:::L2A_30uM_30min_02 4615:::L2A_30uM_30Min_06 4615:::L2A_30uM_4h_04 4615:::L2A_30uM_4h_08 4615:::LAA_50uM_10min_02 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261_04 4615:::MDA_1254.pMV261.3524_01 4615:::MDA_1254.pMV261.3524_03 4615:::MDA_1254.pMV261.3524_04 4615:::MDG_1254.pMV261.3524_02 4615:::MTB1254_Pellicle_21D_04 4615:::MTB1254_Pellicle_56D_02 4615:::MTB1254_SDS_90MIN_04 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.0485.1._PA_30m_01 4615:::MTB1254.0485.1._PA_30m_02 4615:::MTB1254.0485.1._PA_30m_04 4615:::MTB1254.3524.1._PA_12h_01 4615:::MTB1254.3524.1._PA_12h_03 4615:::MTB1254.B4.1._OA_10MIN_02 4615:::MTB1254.B4.1.Compl._OA_30MIN_01 4615:::MTB1254.B4.1.Compl._PA_30MIN_02 4615:::MTB1254whiB4_SDS_90MIN_01 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::MTB889_PA50_1h_02 4615:::OA_100uM_2h_T0_01 4615:::OA_50uM_1h_07 4615:::OA_50uM_24h_03 4615:::OA_50uM_2h_01 4615:::OA_50uM_2h_03 4615:::OA_50uM_2h..0.5.BSA.10mMGlu._30min_01 4615:::OA_50uM_30min_05 4615:::OA_50uM_30min_06 4615:::OA_50uM_4h_09 4615:::PA_50uM_10min_09 4615:::PA_50uM_1h_01 4615:::PA_50uM_1h_05 4615:::PA_50uM_1h_11 4615:::PA_50uM_24h_07 4615:::PA_50uM_24h_09 4615:::PA_50uM_2h_02 4615:::PA_50uM_2h_05 4615:::PA_50uM_2h_T0_02 4615:::PA_50uM_30min_01 4615:::PA_50uM_4h_03 4615:::PA_50uM_8h_01 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_4h_02 4615:::PA_50uM.OA_30uM_2h_03 4615:::PA_50uM.OA_30uM_4h_02 4615:::Rv_Rv3524.1_OA_10min 4615:::Rv.3524.2._01 4615:::Rv.MT71_100503_02 4615:::Rv.MT71_100803_01 4615:::Rv.MT90_100803_01 4615:::Rv.MT90_100903_01 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._OK 4615:::Rv3524.1_OA_10min 4615:::Starvation_1254_PA50_6h_01 4615:::Starvation_1254_PA50_6h_04 4615:::Starvation_OA50_24h_03 4615:::TBD041 4615:::TBD043 4615:::TBD094 4615:::TBD097 4615:::TBD1114 4615:::TBD1267 4615:::TBD1268 4615:::TBD1275 4615:::TBD664 4615:::TBE058 4615:::WM_1254_vs_1254whiB4_20day 4615:::WM_1254.whiB4._14d_02 4615:::WT_65.4_SDS_01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.3 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.5 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.4 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.3 4815:::H37Rv.reaeration.for.1hrs.rep.2 4815:::H37Rv.reaeration.for.24hrs.rep.6 4815:::H37Rv.reaeration.for.4hrs.rep.7 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.5 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Raghavan_Nature2008:::WT.rep2 Raghavan_Nature2008:::WT.TB.rep3 Rohde_CellHostMicrobe2007:::CDC1551.in.ctrl.vs.100.nM.Concanamycin.A.treated.macrophages.for.2.hr Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.2.hr.after.macrophage.infection
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RV2900C 0.459880063279497 1.09604748414947 -1.22251450155133 0.463712397140159 -1.09604748414947 -0.210778362336436 -0.126467017401862 0.843113449345744 0.29508970727101 -0.3 1.44533734173556 -0.144533734173556 -0.337245379738298 -0.337245379738298 -1.20444778477963 -0.770846582258966 -0.578134936694224 0.529957025303039 NA NA NA NA 0.05 -0.05 NA NA NA NA NA -1.02261502243226 -1.00085725599753 -0.435155328694578 0.0870310657389155 -0.282850963651475 -0.282850963651475 -0.369882029390391 -0.0435155328694577 -0.326366496520933 -0.944287063267233 -0.211982810121216 0.289067468347112 2.71723420246285 0.867202405041337 -0.456084227836555 1.08560893668138 -0.276220025309463 1.30401546832142 0.417541898723607 -1.80506574678975 -0.237677696196515 -0.918592177191935 0.481779113911854 0.725880531627193 -0.597406101250699 0.199135367083566 -0.507473999987153 2.13909926576863 -0.250525139234164 -0.880049848078986 -1.38110012654731 -0.892897291116636 0.301914911384762 -0.963558227823707 1.83831795229896 -0.18515432613083 1.16382719282236 1.95734573338306 -0.119027781084105 NA NA NA NA NA -4.04694455685957 -3.17974215181823 -0.770846582258966 -0.529957025303039 0.529957025303039 0.578134936694224 0 0.433601202520668 -0.856084425489525 -1.34898151895319 -1.71216885097905 -0.144533734173556 -0.313156424042705 NA -0.456273160822403 0.674490759476595 -1.62671300814944 -0.887487841416572 -0.141998054626652 -0.354995136566629 -0.283996109253303 0.354995136566629 4.61493677536618 -0.390494650223292 0.922987355073235 -0.425994163879955 -0.816488814103247 -1.06498540969989 1.59747811454983 1.73947616917648 -0.106498540969989 1.31348200529653 -1.20698346432654 0.0354995136566629 -1.66847714186316 -0.354995136566629 -0.141998054626652 -0.0709990273133258 1.02948589604322 -1.49097957357984 -0.603491732163269 -0.603491732163269 0.177497568283314 0.958486868729898 -0.212997081939977 0.674490759476595 0.425994163879955 0.141998054626652 0.958486868729898 0.567992218506606 0 0.461493677536618 -1.20698346432654 -0.674490759476595 -0.425994163879955 -1.31348200529653 -2.62696401059305 -1.10048492335655 -1.13598443701321 1.9169737374598 1.13598443701321 -1.2424829779832 -0.496993191193281 -0.390494650223292 -0.816488814103247 -0.603491732163269 -1.77497568283314 1.31348200529653 -3.12395720178634 0.177497568283314 0.283996109253303 3.65644990663628 0.319495622909966 2.62696401059305 1.41998054626652 1.10048492335655 -0.567992218506606 -1.66847714186316 0.354995136566629 -0.674490759476595 -1.88147422380313 1.5264790872365 0.922987355073235 1.9169737374598 0.674490759476595 0.0709990273133258 0.709990273133258 1.70397665551982 -0.177497568283315 0.532492704849943 -0.603491732163269 1.45548005992318 -0.212997081939977 0 0.496993191193281 1.59747811454983 2.44946644230974 2.83996109253303 -0.177497568283315 -0.177497568283315 -2.09447130574311 0.425994163879955 0.212997081939977 -0.745489786789921 1.98797276477312 1.20698346432654 -0.106498540969989 0.177497568283314 0 -0.141998054626652 0.106498540969989 0.283996109253303 -0.567992218506606 0.425994163879955 1.63297762820649 -0.0354995136566629 0.283996109253303 0.618283196186879 -0.688255877016934 -0.963558227823707 0.357893056048806 0.0550604701613547 -0.357893056048806 0.151416292943725 0.254807620246714 -1.48387967084851 -1.09417389870648 0.34473972151026 -0.674490759476595 0.431674086065021 -2.10441116956698 -0.296775934169702 0.593551868339404 -1.34898151895319 -0.438418993659787 -2.05719681640362 -0.0337245379738298 0.505868069607446 0.607041683528936 0.539592607581276 NA NA NA NA NA NA NA 0.571443560112116 -0.646386977831737 -1.34898151895319 0.394823859205812 -0.116738785294026 0.168622689869149 0.687461735620376 -1.49166225653478 -1.0765910199338 -0.402100260457201 -2.03644325457357 -1.05465827845431 -0.183952025311799 0.956550531621353 1.85 -0.133996366585758 0.182211021174318 NA NA -0.236220332063389 -0.678947746874018 -0.192 1.7755
[+] Show/hide bicluster #415 motif PSSM #1. bicluster 415 motif PSSM #1 Mycobacterium tuberculosis H37Rv 21x4
POSITION A C G T
1 0 0.25 0 0.75
2 0 0 1 0
3 0.5 0 0 0.5
4 0 0 0 1
5 0 0.25 0.75 0
6 0.75 0 0.25 0
7 0 1 0 0
8 0 0.25 0.75 0
9 0 0.5 0.25 0.25
10 0 0.75 0.25 0
11 0.25 0.5 0.25 0
12 0.25 0 0 0.75
13 0 0 0 1
14 0 0 0.75 0.25
15 1 0 0 0
16 0.75 0.25 0 0
17 0 1 0 0
18 0.25 0 0.5 0.25
19 0.25 0 0 0.75
20 0.5 0.25 0.25 0
21 1 0 0 0 [+] Show/hide bicluster #415 motif PSSM #2. bicluster 415 motif PSSM #2 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 0 0.4 0 0.6
4 0.2 0.8 0 0
5 0 0 0.8 0.2
6 0 0 1 0
7 0 0.8 0.2 0
8 0 0 0 1 |