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[+] Show/hide bicluster #416 rows and columns.
bicluster 416
Mycobacterium tuberculosis H37Rv
17x235
[+] Show/hide bicluster #416 rows (genes).
bicluster 416 genes
Mycobacterium tuberculosis H37Rv
17
[+] Show/hide bicluster #416 rows (short gene names).
bicluster 416 short names
Mycobacterium tuberculosis H37Rv
17
short_name
[+] Show/hide bicluster #416 rows (long gene names).
bicluster 416 long names
Mycobacterium tuberculosis H37Rv
17
long_name
[+] Show/hide bicluster #416 rows (NCBI RefSeq gene IDs).
bicluster 416 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
32
[+] Show/hide bicluster #416 gene upstream sequences.
bicluster 416 upstream sequences
Mycobacterium tuberculosis H37Rv
17
upstream
[+] Show/hide bicluster #416 columns (arrays; conditions).
bicluster 416 arrays
Mycobacterium tuberculosis H37Rv
235
[+] Show/hide bicluster #416 ratios.
bicluster 416 ratios
Mycobacterium tuberculosis H37Rv
17x235
GENES 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Rv..Youman.media.replicate.1 2867:::H37Rv..Youman.media.replicate.2 2867:::H37Rv..Youman.media.replicate.3 2885:::Strain.1254...replicate.3 2885:::Strain.9700665..replicate.3 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.2 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4101:::H37Rv.Day.0.rep.1 4101:::NRP.Day20..1 4107:::DIPED.50ug.mL.vs.DMSO.12h.1 4107:::Palmitate.Glucose..2 4107:::UV.20J.vs.ctrl.8h.1 4107:::WT.t.0h.WT.t.6h..2 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.1..GEO.ac.GSM28051. 4107:::X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046. 4107:::X0.05mM.Palmitate.10mM.Gluc..2 4107:::X0.12mg.mL.BZA.pH5.6..2h. 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.PZA.pH5.6..4h..2 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.12mg.mL.PZAvspH5.6..4h. 4107:::X0.1mM.GSNOvsDMSO..6h 4107:::X0.1mM.GSNOvsDMSO..6h.A 4107:::X0.1ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2mg.mL.AmpvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6hB 4107:::X0.2mg.mL.AmpvsEtOH..6hC 4107:::X0.2ug.mL..111891.DMSO..5.5h..3 4107:::X0.2ug.mL.INH.EtOH..6h 4107:::X0.2ug.mL.PA824.DMSO..6h..2 4107:::X0.4ug.mL.PA824.DMSO..6h..1 4107:::X0.4ug.mL.PA824.DMSO..6h..2 4107:::X0.4ug.mL.PA824.DMSO..6h..4 4107:::X0.5ug.mL..111891vsDMSO.6h 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hB 4107:::X1.2mg.mL.NamvspH5.6..10.5h. 4107:::X1.2mg.mL.PZAvspH5.6..10.5h. 4107:::X1.2mg.mL.PZAvspH5.6..7h.A 4107:::X100ug.mL.Cphx.DMSO..6h 4107:::X100uM.DCCD.DMSO..6h 4107:::X10mM.Succinate.10mM.Gluc..1 4107:::X10mM.Succinate.10mM.Gluc..2 4107:::X10ug.mL..109.DMSO..6h 4107:::X10ug.mL..109vsDMSO..6h 4107:::X10ug.mL..109vsDMSO..6hA 4107:::X10ug.mL..241vsDMSO..6h 4107:::X10ug.mL.clofazimine.DMSO..6h 4107:::X10ug.mL.methoxatinvsDMSO..6h.A 4107:::X10ug.mL.PA.1vsDMSO..6hB 4107:::X10ug.mL.TriclosanvsDMSO..6h 4107:::X10ug.mL.TriclosanvsDMSO..6hA 4107:::X10ug.mL.TriclosanvsDMSO..6hC 4107:::X10ug.mLchlorpromazinevsctrl.6h 4107:::X12ug.mLEthionamidevsEtOH.6h 4107:::X13ug.mL.clfzine.DMSO..6h..1 4107:::X13ug.mL.clfzine.DMSO..6h..2 4107:::X150uM.Deferroxaminevsctrl..6hA 4107:::X150uM.Deferroxaminevsctrl..6hB 4107:::X1mM.DNP.DMSO..6h..2 4107:::X1mM.DTNBvsDMSO..6h 4107:::X1ug.mL..111891.DMSO..12h..1 4107:::X1ug.mL..121940.DMSO..12h 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X2.5mM.Dinitrophenol.DMSO..6h 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X20ug.mL.chlorprmz.DMSO..6h..1 4107:::X20ug.mL.chlorprmz.DMSO..6h..2 4107:::X20ug.mL.ethambutol.DMSO 4107:::X20ug.mL.KCN.DMSO..6h 4107:::X20ug.mL.Prcp.6776.DMSO..6h..1 4107:::X20uM.DCCD.DMSO..6h..1 4107:::X25ug.mL.TRZ.DMSO..6h 4107:::X2mM.DTNBvsDMSO 4107:::X2mM.DTTvsDMSO..6h 4107:::X2mM.ZnSO4.DMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hB 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X2ug.mL.SMvsEtOH..6hA 4107:::X30ug.mLProcept6776vsDMSO.6h 4107:::X30ug.mLProcept6776vsDMSO.6hA 4107:::X40ug.mLProcept6778vsDMSO.6h 4107:::X40ug.mLProcept6778vsDMSO.6hA 4107:::X4mM.H2O2.ctrl..2h...2 4107:::X4mM.H2O2vsctrl..1h. 4107:::X4mM.H2O2vsctrl..4h. 4107:::X50ug.mL.Triclosan.DMSO..6h 4107:::X50ug.mL.Triclosan.EtOH 4107:::X50ug.mL.TriclosanvsEtOH..6h 4107:::X50ug.mL.VerapamilvsDMSO..6h 4107:::X50ug.mLAntimycinAvsDMSO..6hB 4107:::X50uM.CCCP.DMSO..6h..1 4107:::X50uM.CCCP.DMSO..6h..2 4107:::X50uM.CCCPvsDMSO..6h 4107:::X50uM.NigericinvsDMSO..6h 4107:::X50uM.NigericinvsDMSO..6h.A 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..1 4107:::X5ug.mL.KCN.DMSO..6h..1 4107:::X60ug.mL.ChlorprovsEtOH..6h 4107:::X9ug.mLAscidideminNpvsDMSO.6h 4107:::X9ug.mLNaturalproductvsDMSO.6h 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.4 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.2 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4575:::Extracted.Lung.Surfactant.2hrs.rep.2 4575:::Whole.Lung.Surfactant.2hrs.rep.3 4575:::Whole.Lung.Surfactant.30min.rep.5 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2 4583:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4583:::X20ug.ml.KCN.vs.DMSO.6hrs 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4583:::X5ug.ml.KCN.vs.DMSO.6hrs.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.2 4615:::AA_30uM_4h_04 4615:::AA_30uM_4h_05 4615:::AA_30uM_4h_07 4615:::AA_3uM_10.min_01 4615:::AA_60uM_24h_03 4615:::L2A_30uM_30Min_06 4615:::L2A_30uM_4h_T0_02 4615:::LAA_50uM_30min_01 4615:::MDGCy3.7H9Cy5.02 4615:::MTB1254_Bottom_10D_01 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254_Pellicle_42D_01 4615:::MTB1254_SDS_90MIN_01 4615:::MTB1254_SDS_90MIN_02 4615:::MTB1254_SDS_90MIN_04 4615:::MTB1254.0485.14._01 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.3524.1._OA_10min_02 4615:::MTB1254.3524.1._OA_10min_03 4615:::MTB1254whiB4_SDS_90MIN_02 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::OA_50uM_1h_09 4615:::OA_50uM_30min_06 4615:::OA_50uM_4h_07 4615:::PA_50uM_3d_06 4615:::PA_50uM.OA_10uM_12h_02 4615:::Rv.MT71_100703_01 4615:::Rv.MT90_100803_01 4615:::Rv.MT90_100903_01 4615:::SDS_60min_01 4615:::Starvation_1254_12h_01 4615:::Starvation_1254_12h_04 4615:::Starvation_1254_24h_05 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_6h_01 4615:::Starvation_1254_6h_02 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_1254_OA50_12h_04 4615:::Starvation_1254_OA50_5d_02 4615:::Starvation_1254_OA50_5d_04 4615:::Starvation_1254_PA50_24h_02 4615:::Starvation_1254_PA50.OA30_24h_01 4615:::Starvation_1254_PA50.OA30_24h_02 4615:::Starvation_1254_PA50.OA30_24h_04 4615:::X7H9MTB1254_SDS_90MIN_01 4615:::X7H9MTB1254.0465.4._SDS_90MIN_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.2 4638:::CDC1551.wild.type.vs.kstR.null.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.3 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4731:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.6 Raghavan_Nature2008:::Complemented.espR.mutant..R...rep3 Raghavan_Nature2008:::WT.rep2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr Rohde_CellHostMicrobe2007:::CDC1551.in.ctrl.vs.100.nM.Concanamycin.A.treated.macrophages.for.2.hr Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.2.hr.after.macrophage.infection Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.4hrs
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RV3725 0.674490759476595 0.160593037970618 0.610253544288348 1.15626987338845 -0.252934034803723 -0.421556724672872 -0.674490759476595 -0.240072982186585 1.70337496884767 0.240072982186585 -2.70939508467717 -1.3375494721824 -2.02347227842979 -1.4518699398903 -1.4518699398903 -1.20036491093292 -2.06920046551295 -1.38327765926556 -0.0571602338539488 -1.17750081739134 -3.07522058134244 0.560170291768698 -0.994588069058708 0.240072982186585 0.422985730519221 0.743083040101334 0.743083040101334 0.857403507809231 0.674490759476595 -1.3375494721824 0.537306198227118 0.776448664978871 0.674490759476595 0.944287063267233 -0.370969917712127 0.918056867065366 1.14288712022423 -0.24356610758877 0.824377594915839 0.918056867065366 0.936792721495271 0.505868069607446 -0.543339778467257 -1.10541541136442 0.24356610758877 -1.19909468351395 -0.0187358544299054 1.14288712022423 1.40518908224291 0.44966050631773 -0.168622689869149 0.149886835439243 -0.168622689869149 0.524603924037352 0 -1.12415126579433 -1.63001933540177 -1.92979300628026 -4.00947284799976 0.749434177196217 0.131150981009338 0.0749434177196217 1.21783053794385 0.711962468336406 -0.693226613906501 1.53634006325224 -5.24603924037352 0.824377594915839 1.08667955693451 -0.65575490504669 -0.805641740485933 -0.805641740485933 -1.51760420882234 -0.880585158205555 1.87358544299054 0.487132215177541 -1.53634006325224 -1.61128348097187 0.0749434177196217 -0.281037816448581 0.112415126579433 -1.08667955693451 -0.993000284784987 0.0562075632897162 0.224830253158865 -2.67922718347648 1.44266079110272 0.786905886056028 1.14288712022423 -2.772906455626 -2.52934034803723 -2.39818936702789 -1.66749104426158 -1.91105715185035 0.468396360747636 -5.67696389226134 -2.11715155057931 -3.63475575940165 -0.599547341756974 0.805641740485933 -1.19909468351395 0.730698322766311 -1.55507591768215 0.224830253158865 0.430924651887825 -0.281037816448581 -0.0936792721495272 -3.7846425948409 -2.62301962018676 -0.580811487327068 0.805641740485933 -2.26703838601856 -4.06568041128948 -2.66049132904657 0.187358544299054 0.412188797457919 0.505868069607446 -2.21083082272884 -2.62301962018676 -1.61128348097187 0.262301962018676 0.299773670878487 -0.149886835439243 -1.91105715185035 -0.524603924037352 -1.01173613921489 -1.21783053794385 -0.569101578308377 NA -1.53695435356142 -1.80232776712598 -1.82444221825636 0.851406368519637 0.718719661737356 0.210087285738612 1.0062075264323 1.24946648886648 -0.303520841764468 0 -4.24929178470255 -1.57762245436899 -1.50903017374425 0.708786899788964 0.868835554580021 -5.69315929185329 -5.03010057914749 0.0228640935415794 -0.045728187083159 -0.320097309582113 0.685922806247385 0.320097309582113 -7.06500490434806 0.891699648121601 -2.76655531853112 -1.7922183037521 0.700432711764157 0.207535618300491 -0.466955141176104 0.492897093463666 -0.207535618300491 -0.466955141176104 0.57072295032635 -0.0259419522875613 2.10129813529247 -0.882026377777086 0 -2.51636937189345 -2.87955670391931 -3.13897622679492 -2.77578889476906 0.103767809150245 0.596664902613911 0.233477570588052 1.21927175751538 -3.19086013137005 -3.06115036993224 -3.06115036993224 -0.518839045751227 0.492897093463666 0 0.0518839045751227 0.830142473201963 1.16738785294026 1.71216885097905 2.02347227842979 -1.27115566209051 -4.9030289823491 -2.90549865620687 -3.8912928431342 -3.83940893855908 -2.7498469424815 -1.6084010418288 -4.12477041372225 -2.7498469424815 -2.41260156274321 -5.52563583725057 -3.47622160653322 -0.337245379738298 -1.63434299411636 -3.45027965424566 -1.9456464215671 -1.99753032614222 -1.6084010418288 0.582893248930391 -0.420077578270511 0.420077578270511 0.830142473201963 -1.00308882178571 -0.726374664051718 -0.380481966884233 0.242124888017239 -1.83323129498767 -0.0345892697167484 1.34898151895319 0 1.86066416407337 -0.418649436916507 1.77053824362606 -0.210778362336436 0.404694455685957 0.525 -1.33844260083637 0.980119384864428 1.02227505733171 -0.242395116686901 0.4 -0.3 -0.0396342 0.58 -0.18 -0.7465 0.014 1.0315 -1 1
[+] Show/hide bicluster #416 motif PSSM #1. bicluster 416 motif PSSM #1 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0.066667 0.8 0.133333 0
2 0 0.733333 0.066667 0.2
3 0.133333 0 0.533333 0.333333
4 0.266667 0 0.066667 0.666667
5 0 0.666667 0.066667 0.266667
6 0.266667 0 0.733333 0
7 0 0.133333 0 0.866667
8 0 0.8 0 0.2
9 0 0 1 0
10 0 0.066667 0 0.933333
11 0.133333 0.866667 0 0 [+] Show/hide bicluster #416 motif PSSM #2. bicluster 416 motif PSSM #2 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 1 0 0 0
2 0 0 0 1
3 0 0 1 0
4 0 1 0 0
5 0 1 0 0
6 0.666667 0.333333 0 0
7 0 0 1 0
8 0 0 1 0
9 1 0 0 0
10 0 0 0 1
11 0.333333 0 0.666667 0
12 0.666667 0.333333 0 0
13 0 1 0 0
14 1 0 0 0
15 0 0.666667 0.333333 0
16 0 0.333333 0 0.666667
17 0 0 0.666667 0.333333
18 0 0 0 1
19 0 0 1 0
20 1 0 0 0
21 0 1 0 0
22 0 0.333333 0 0.666667
23 0 0 1 0 |