[+] Show/hide bicluster #458 rows and columns.
bicluster 458
Mycobacterium tuberculosis H37Rv
20x240
[+] Show/hide bicluster #458 rows (genes).
bicluster 458 genes
Mycobacterium tuberculosis H37Rv
20
[+] Show/hide bicluster #458 rows (short gene names).
bicluster 458 short names
Mycobacterium tuberculosis H37Rv
20
short_name
[+] Show/hide bicluster #458 rows (long gene names).
bicluster 458 long names
Mycobacterium tuberculosis H37Rv
20
long_name
[+] Show/hide bicluster #458 rows (NCBI RefSeq gene IDs).
bicluster 458 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
38
[+] Show/hide bicluster #458 gene upstream sequences.
bicluster 458 upstream sequences
Mycobacterium tuberculosis H37Rv
20
upstream
[+] Show/hide bicluster #458 columns (arrays; conditions).
bicluster 458 arrays
Mycobacterium tuberculosis H37Rv
240
[+] Show/hide bicluster #458 ratios.
bicluster 458 ratios
Mycobacterium tuberculosis H37Rv
20x240
GENES 2867:::H37Ra..7H9.shake.replicate.1 2867:::H37Rv..Youman.media.replicate.3 2885:::H37Rv..7H9.roll.replicate.1 2885:::Strain.1843...replicate.2 2885:::Strain.1843..replicate.4 2885:::Strain.9700665..replicate.3 2885:::Strain.CDC1551..replicate.3 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.5 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.5 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2a 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2b 4084:::High.iron.wt.vs.low.iron.wt.1b 4084:::High.iron.wt.vs.low.iron.wt.2b 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4 4100:::H37Rv.0.2..Oxygen..2h..2 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::X0.1mMGSNO.5ug.mLKCNvsDMSO.6h 4107:::X0.2mM.NaN3.DMSO 4107:::X0.2ug.mL.Mtmvsctrl..2h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.2ug.mL.PA824.DMSO..6h..1 4107:::X0.2ug.mL.PA824.DMSO..6h..2 4107:::X0.4mM.NaN3vsDMSO..4h.A 4107:::X0.4ug.mL.PA824.DMSO..6h..2 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X10ug.mL.ClotrimvsEtOH..6hA 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X200uM.Dipyridylvsctrl..6hA 4107:::X20ug.mL.Prcp.6776.DMSO..6h..1 4107:::X25ug.mL.TRZ.DMSO..6h 4107:::X2mM.DTNBvsDMSO 4107:::X2ug.mL..111895vsDMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X40ug.mL.EtavsEtOH..6hA 4107:::X40ug.mLProcept6778vsDMSO.6hA 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X50ug.mL.PA.1vsDMSO..6h 4107:::X5ug.mL.KCN.DMSO..6h..1 4107:::X5ug.mL.KCN.DMSO..6h..2 4107:::X9ug.mLAscidideminNpvsDMSO.6hA 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.7.day.rep.5 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.1 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4575:::Purified.Surfactant.Lipids.30min.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.5 4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.1 4615:::AA_30uM_10.min_05 4615:::AA_30uM_1h_03 4615:::AA_30uM_24.AA_30uM_1h_01 4615:::AA_30uM_24h_T0_01 4615:::AA_30uM_4h_08 4615:::AA_60uM_24h_03 4615:::aceatate.induction.1 4615:::aceatate.induction.3 4615:::Acetate.3mM.10m.02 4615:::Acetate.3mM.2h.02 4615:::Acetate.3mM.2h.04 4615:::Acetate.3mM.2h.05 4615:::Acetate.3mM.30m.02 4615:::Acetate.3mM.30m.03 4615:::Acetate.3mM.30m.04 4615:::Acetate.3mM.30m.06 4615:::Acetate.3mM.30m.07 4615:::Acetate.3mM.60m.01 4615:::Acetate.3mM.60m.02 4615:::Acetate.3mM.60m.03 4615:::CHP.AA.24h.1 4615:::CHP25uM_24h.50uMOA_30min_01 4615:::CK.AA.2h 4615:::CK.PA.NA.101801.2 4615:::ETYA_10uM.AA_1h_02 4615:::ETYA_30uM_10min.03 4615:::ETYA_30uM_10min.04 4615:::ETYA_30uM_10min.05 4615:::ETYA_3uM_1h_02 4615:::Glucose_5mM_10min_01 4615:::L2A_30uM_1h_05 4615:::L2A_30uM_1h_07 4615:::L2A_30uM_30min_04 4615:::L2A_30uM_4h_06 4615:::MAPP_5uM_4h_01 4615:::MDGCy3.7H9Cy5.01 4615:::MDGCy3.7H9Cy5.02 4615:::MTB1254_Bottom_10D_01 4615:::MTB1254_Bottom_10D_02 4615:::MTB1254_Bottom_10D_03 4615:::MTB1254_Bottom_10D_04 4615:::MTB1254_Bottom_21D_01 4615:::MTB1254_Bottom_21D_02 4615:::MTB1254_Bottom_21D_04 4615:::MTB1254_Pellicle_42D_02 4615:::MTB1254_Pellicle_42D_03 4615:::MTB1254_Pellicle_42D_04 4615:::MTB1254_Pellicle_56D_01 4615:::MTB1254_Pellicle_56D_02 4615:::MTB1254.0485.1._Act_2h_01 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.3219.1._01 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.3524.1.T0_WtT0_02 4615:::MTB1254TA1_OA.30min_01 4615:::MTB1254vsMTB1254.0494.4. 4615:::OA_50uM_10min_07 4615:::OA_50uM_1h_07 4615:::OA_50uM_1h_10 4615:::OA_50uM_2h..1.0..BSA.10mMGlu._30.min._01 4615:::OA_50uM_2h..1.5.BSA.10mMGlu._30.min_01 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_30min_02 4615:::OA_50uM_4h_08 4615:::OA_50uM_4h_09 4615:::PA_100uM_4h_T0_01 4615:::PA_50uM_10min_04 4615:::PA_50uM_10min_05 4615:::PA_50uM_1h_05 4615:::PA_50uM_24h_04 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_T0_01 4615:::PA_50uM_30.min_04 4615:::PA_50uM_3d_02 4615:::PA_50uM.OA_10uM_24h_02 4615:::PA_50uM.OA_10uM_2h_03 4615:::PA_50uM.OA_10uM_4h_01 4615:::PA_50uM.OA_30uM_2h_03 4615:::PA_50uM.OA_30uM_2h_04 4615:::Rv_OA30_30mim_01 4615:::Rv.MT106_100503_01 4615:::Rv.pMV0481.1. 4615:::Starvation_1254_12h_01 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_12h_03 4615:::Starvation_1254_12h_04 4615:::Starvation_1254_24h_01 4615:::Starvation_1254_24h_03 4615:::Starvation_1254_24h_04 4615:::Starvation_1254_24h_06 4615:::Starvation_1254_24h_07 4615:::Starvation_1254_24h_08 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_3d_03 4615:::Starvation_1254_3d_04 4615:::Starvation_1254_5d_01 4615:::Starvation_1254_5d_02 4615:::Starvation_1254_5d_03 4615:::Starvation_1254_5d_04 4615:::Starvation_1254_6h_01 4615:::Starvation_1254_6h_03 4615:::Starvation_1254_6h_05 4615:::Starvation_1254_6h_07 4615:::Starvation_1254_6h_08 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_12h_02 4615:::Starvation_1254_OA50_12h_04 4615:::Starvation_1254_OA50_24h_03 4615:::Starvation_1254_OA50_3d_01 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_OA50_3d_03 4615:::Starvation_1254_OA50_3d_04 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_OA50_5d_02 4615:::Starvation_1254_OA50_5d_03 4615:::Starvation_1254_OA50_5d_04 4615:::Starvation_1254_PA50_24h_03 4615:::Starvation_1254_PA50_24h_04 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::Starvation_1254_PA50.OA30_6h_03 4615:::Starvation_OA50_24h_02 4615:::Succinate_10mM_30min_01 4615:::TBD040 4615:::TBD1116 4615:::TBE285 4615:::TBE736 4615:::Test.4 4615:::X2.2..Dipyridyl_0.2mM.Dpd.AA_50uM_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.H37Rv.rep.3 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.3 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 Raghavan_Nature2008:::Complemented.espR.mutant..R...rep3 Raghavan_Nature2008:::WT.rep2 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.4hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.4hrs
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RV3709C -1.78258272147386 1.25262569617082 1.54169316451793 -1.20444778477963 -1.49351525312675 -1.39715943034438 0.481779113911854 0.989253113899006 -2.11340437969333 -2.65299698727461 -0.944287063267233 -1.93354017716624 -0.089932101263546 0.505868069607446 0.674490759476595 -0.674490759476595 -0.505868069607446 -0.674490759476595 0.674490759476595 NA NA NA NA 0.132686706782281 -0.309602315825322 0.663433533911405 -0.265373413564562 -1.28263816556205 -0.597090180520265 -0.0442289022607603 -1.01726475199749 NA -0.152304365043102 1.00085725599753 0.848552890954426 -2.2628077092118 -1.41425481825738 1.32722375251846 1.41425481825738 0.761521825215511 1.50128588399629 0.0870310657389155 0.304608730086204 1.17491938747536 0.935583956693342 -0.957341723128071 -0.609217460172409 1.32722375251846 -1.30546598608373 0.913826190258613 -0.478670861564035 -0.739764058780782 0.652732993041866 1.58831694973521 2.2628077092118 -2.58917420573274 0.39163979582512 1.65359024903939 1.21843492034482 -0.565701927302951 0.969580466747606 -2.43097711228023 0.674490759476595 -0.119027781084105 -1.11092595678498 -0.277731489196245 0.436435197308385 -0.23805556216821 -0.47611112433642 1.03157410272891 0.63481483244856 -1.11712532038311 -4.61604613516795 -0.185484958856064 -1.23094563604479 -0.489005800620532 1.55651713725368 0.821119185449768 0.058651370389269 -0.117302740778538 -1.34898151895319 0.234605481557076 -0.0586513703892692 -1.49560994492636 -0.469210963114153 -0.0293256851946346 0.439885277919519 -0.850444870644403 -0.117302740778538 1.43695857453709 0.527862333503422 -0.146628425973173 -0.0586513703892692 -0.967747611422941 0.938421926228306 0.527862333503422 0.058651370389269 -3.31380242699371 -1.67156405609417 0.0293256851946344 0.821119185449768 2.34605481557077 0.879770555839037 0.293256851946346 0.0293256851946344 -0.146628425973173 0.205279796362442 -0.117302740778538 0.70381644467123 0.70381644467123 -0.469210963114153 0.498536648308788 1.17302740778538 1.08505035220148 -2.93256851946346 -2.2874034451815 -2.96189420465809 -3.10852263063127 -6.59827916879278 -4.57480689036299 -4.6627839459469 -4.07627024205421 -2.25807775998686 -4.34020140880592 -5.04401785347715 -4.80941237192007 0.234605481557076 0.175954111167807 -0.527862333503422 0.645165074281961 1.11437603739611 -0.351908222335615 0.381233907530249 -0.0586513703892692 -2.55133461193321 1.6129126857049 -0.263931166751711 -0.0586513703892692 0.469210963114153 -0.615839389087326 1.64223837089954 1.08505035220148 -0.762467815060499 1.05572466700684 1.02639898181221 -5.6012058721752 -0.205279796362442 -1.43695857453709 -0.146628425973173 -0.0586513703892692 0.381233907530249 0.527862333503422 -0.117302740778538 0.527862333503422 0.909096241033672 1.524935630121 -2.19942638959759 0.0879770555839036 -1.11437603739611 NA -5.04401785347715 -4.92671511269861 -5.33727470542349 -3.07919694543663 -6.3636736872357 -6.42232505762497 -3.28447674179907 -2.63931166751711 -3.19649968621517 -6.9501873911284 -6.83288465034986 -4.98536648308788 -9.35489357708843 -5.98243977970545 -5.45457744620203 -6.53962779840351 -6.86221033554449 -4.6627839459469 -4.95604079789324 -5.13199490906105 -1.40763288934246 -1.17302740778538 -3.46043085296688 -4.72143531633617 -3.46043085296688 -2.84459146387955 -5.10266922386642 -4.39885277919519 -3.87099044569176 -4.57480689036299 -4.16424729763811 -4.36952709400055 -5.21997196464495 -4.89738942750397 -2.81526577868492 -1.96482090804052 -1.67156405609417 -2.25807775998686 2.08212364881905 0.909096241033672 0.733142129865864 0.615839389087326 2.05279796362442 -0.117302740778538 0.058651370389269 0.263931166751711 -2.66584443031226 -0.970054125988811 -0.530498350150131 0.311303427450736 0.172946348583742 -0.702020994557273 0.454248878831176 1.30768616633217 0.601176546490009 -4.23756151062469 -0.337245379738298 -1.51027278752368 0.0146628425973173 -0.0439885277919519 -0.395896750127567 -0.982410454020258 0.249268324154394 0.261093197216747 0.718006292346053 1.45777035112683 1.78413684764777 -1.21843492034482 0.935583956693342 -0.152304365043102 -0.878881898711927 -0.321916044295648 1.34898151895319 -1.41740811774067 0.146628425973173 -0.0488761419910576 1.0675 -1.0775 1 1
[+] Show/hide bicluster #458 motif PSSM #1. bicluster 458 motif PSSM #1 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 0.066667 0.933333 0 0
2 0 0 1 0
3 0.133333 0.8 0 0.066667
4 0.133333 0.066667 0 0.8
5 0 0 1 0
6 1 0 0 0
7 0 1 0 0
8 0.066667 0.866667 0 0.066667 [+] Show/hide bicluster #458 motif PSSM #2. bicluster 458 motif PSSM #2 Mycobacterium tuberculosis H37Rv 13x4
POSITION A C G T
1 1 0 0 0
2 0 0 0 1
3 0 0.5 0.5 0
4 1 0 0 0
5 1 0 0 0
6 0 0 1 0
7 0 1 0 0
8 1 0 0 0
9 0 1 0 0
10 0 0.5 0 0.5
11 0 0 0 1
12 0 0 0 1
13 1 0 0 0 |