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[+] Show/hide bicluster #496 rows and columns.
bicluster 496
Mycobacterium tuberculosis H37Rv
17x240
[+] Show/hide bicluster #496 rows (genes).
bicluster 496 genes
Mycobacterium tuberculosis H37Rv
17
[+] Show/hide bicluster #496 rows (short gene names).
bicluster 496 short names
Mycobacterium tuberculosis H37Rv
17
short_name
[+] Show/hide bicluster #496 rows (long gene names).
bicluster 496 long names
Mycobacterium tuberculosis H37Rv
17
long_name
[+] Show/hide bicluster #496 rows (NCBI RefSeq gene IDs).
bicluster 496 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
32
[+] Show/hide bicluster #496 gene upstream sequences.
bicluster 496 upstream sequences
Mycobacterium tuberculosis H37Rv
17
upstream
[+] Show/hide bicluster #496 columns (arrays; conditions).
bicluster 496 arrays
Mycobacterium tuberculosis H37Rv
240
[+] Show/hide bicluster #496 ratios.
bicluster 496 ratios
Mycobacterium tuberculosis H37Rv
17x240
GENES 2867:::H37Rv..Dubos.media.replicate.4 2867:::H37Rv..Sauton.s.media.replicate.3 2885:::H37Ra..7H9.roll.replicate.1 2885:::Strain.9802501..replicate.4 4055:::H37Rv.Vs.M.bovis.rep2 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.6 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.5 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.7 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.7 4084:::High.iron.wt.vs.high.iron.ideR.KO.1a 4084:::High.iron.wt.vs.high.iron.ideR.KO.3b 4100:::H37Rv.0.2..Oxygen..2h..1 4100:::H37Rv.0.2..Oxygen..2h..5 4107:::pH4.8vspH6.8..5h. 4107:::pH5.6vspH6.8..2h.A 4107:::UV.60J.vs.ctrl.6h.1 4107:::X0.12mg.mL.Nam.pH5.6..4h..1 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4107:::X0.2mg.mL.TLMvsEtOH..6h 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X10ug.mL.capreomycinvsEtOH..6h 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.PA.1vsDMSO..6hB 4107:::X10ug.mL.RoxvsEtOH..6h 4107:::X10ug.mL.TetvsEtOH..6hA 4107:::X10ug.mLmnd.Dubos.vsDMSO.6h 4107:::X1ug.mL..109vsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X20ug.mL.ethambutol.DMSO 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X2ug.mL..121940vsDMSO..6hA 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X4mM.H2O2.ctrl..4h...1 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X50ug.mL.RoxvsEtOH..6h 4107:::X5ug.mL.AmivsEtOH..6hA 4107:::X5ug.mL.TetvsEtOH..6h 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X5ug.mLStreptomycinvsEtOH.6h 4107:::X5ug.mLStreptomycinvsEtOH.6hA 4107:::X7d.Dubos.NRP.1vsDubos.log.phase 4107:::X7d.Dubos.NRP.1vsDubos.log.phase.A 4363:::H37Rv.hypoxia.1.day.rep.10 4363:::H37Rv.hypoxia.1.day.rep.7 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4hr.rep.7 4363:::H37Rv.hypoxia.7.day.rep.3 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.8hr.rep.2 4363:::H37Rv.hypoxia.8hr.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.5 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Extracted.Lung.Surfactant.30min.rep.4 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep1 4575:::Purified.Surfactant.Lipids.2hrs.rep.2 4575:::Whole.Lung.Surfactant.2hrs.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.4 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.3 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.1 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4615:::AA_30uM_10.min_07 4615:::AA_30uM_24h_02 4615:::AA_30uM_24h_03 4615:::AA_30uM_2h_09 4615:::AA_30uM_4h_01 4615:::Acetate.3mM.2h.03 4615:::Acetate.3mM.30m.03 4615:::Acetate.3mM.30m.07 4615:::C2_ceramide_25uM_1h_01 4615:::CK_LA_2h 4615:::CK.AA.2h 4615:::CK.OA.Na.24h.1 4615:::CK.PA.Na.2h.01 4615:::ETYA_10uM_1h_02 4615:::ETYA_30uM_10min.02 4615:::ETYA_30uM_10min.04 4615:::Glucose_40mM_1h.OA_50uM_10min 4615:::L2A_30uM_4h_04 4615:::L2A_30uM_4h_08 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261.3524_04 4615:::MDGCy3.7H9Cy5.01 4615:::MTB1248_PA50_1h_01 4615:::MTB1248_PA50_1h_02 4615:::MTB1254_FA5_10min_02 4615:::MTB1254_Pellicle_21D_03 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.0485.1._OA_10m_03 4615:::MTB1254.0485.1._PA_10m_04 4615:::MTB1254.0485.1._PA_12h_01 4615:::MTB1254.0485.1._PA_12h_02 4615:::MTB1254.0485.1._PA_30m_02 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_03 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.3524.1.T0_WtT0_02 4615:::MTB1254.3524.2._INH_20MIN 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_03 4615:::MTB1254.B4.1.Compl._PA_4h_04 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB1254.B4.1.Compl._PA_4h_06 4615:::MTB1254.whiB4_SDS_90MIN_01 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::MTB1370_PA50_1h_01 4615:::MTB1370_PA50_1h_03 4615:::MTB6548_PA50_1h_01 4615:::MTB6548_PA50_1h_02 4615:::MTB889_PA50_1h_02 4615:::MTB889_PA50_1h_03 4615:::OA_50uM_10min.Glu_40mM_20min_01 4615:::OA_50uM_1h_01 4615:::OA_50uM_1h_03 4615:::OA_50uM_24h_03 4615:::OA_50uM_2h_07 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_2h.1.5..BSA_30min_01 4615:::PA_50uM_1h_01 4615:::PA_50uM_1h_09 4615:::PA_50uM_24h_03 4615:::PA_50uM_24h_04 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_03 4615:::PA_50uM_2h_06 4615:::PA_50uM_2h_07 4615:::PA_50uM_30.min_06 4615:::PA_50uM_30min_03 4615:::PA_50uM_3d_05 4615:::PA_50uM_8h_01 4615:::PA_50uM_8h_05 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_50uM.AA_30uM_2h_02 4615:::PA_50uM.OA_10uM_12h_01 4615:::PA_50uM.OA_30uM_24h_01 4615:::PA_50uM.OA_30uM_24h_02 4615:::Rv_Rv3524.1_OA_10min 4615:::Rv.MT71_100503_02 4615:::Rv.MT90_100503_01 4615:::Rv.MT90_100803_01 4615:::Rv.MT90_100903_01 4615:::Rv.MT96_100503_02 4615:::Rv3524.1_OA_10min 4615:::Starvation_1254_24h_04 4615:::Starvation_1254_24h_05 4615:::Starvation_1254_24h_07 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_5d_02 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_OA50_3d_04 4615:::Starvation_1254_PA50_24h_04 4615:::Starvation_1254_PA50_6h_02 4615:::Starvation_1254_PA50_6h_03 4615:::Starvation_T0 4615:::TBD1137 4615:::TBD426 4615:::TBD625 4615:::TBD816 4615:::TBD818 4615:::Test_361.1 4615:::Test_361.3 4615:::Tet_20uM_30M_01 4615:::Tet_50ng_30M_01 4615:::WM_1254_vs_1254whiB4_20day 4615:::WM_T0_01 4615:::WT_85.1_OA_10min_01 4615:::WT_85.1_PA_10min_02 4615:::X7H9_PA100um_4h_T0_01 4615:::X7H9MTB1254_SDS_90MIN_01 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.1 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.H37Rv.rep.3 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.5 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.7 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages.for.24hrs
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RV2882C -0.60423130536445 0.379401052205585 -0.983632357570035 0.562075632897163 -0.794748801863895 0.05 -0.25 -0.1 0.0843113449345744 -0.0421556724672871 0.590179414542021 0.274011871037367 0.147544853635505 -3.20383110751383 -0.505868069607446 0.765638159405865 1.28821658566701 0.911473999292696 0.644108292833505 -0.413201546346022 0.661764518731754 0.827205648414692 -0.661764518731754 -0.827205648414692 0.633612531629529 0.265708481005931 0.328130639745371 1.45835839886831 NA -0.0204391139235332 0.367904050623597 0.44966050631773 -2.37093721512985 1.14459037971786 0.756247215170728 0.306586708852998 -1.06283392402373 0.0408782278470664 -0.204391139235332 0.408782278470664 0.470099620241263 -0.654051645553062 -1.51249443034146 0.0817564556941328 -3.65860139231244 -0.347464936700064 -0.0204391139235332 -2.82059772144758 -2.18698518981805 0.245269367082398 0.715368987323662 1.36942063287672 -0.367904050623597 -0.735808101247195 0.470099620241263 0.306586708852998 -0.102195569617666 -0.143073797464732 -2.04391139235332 -2.02347227842979 -0.0627433264629391 -1.72544147773082 3.01167967022108 0.250973305851756 0.815663244018208 -2.07052977327699 -2.13327309973993 0.69017659109233 0.0627433264629391 0 0.65 0.216800601260334 -1.15626987338845 NA -0.55270770568221 -1.52697213603729 -0.0281037816448581 0.702594541121453 -1.97663264235502 -2.08904776893445 -0.0843113449345744 -0.234198180373818 -0.533971851252305 0.0468396360747635 0.065575490504669 0.0281037816448582 -0.543944160868222 -1.19667715391009 0.217577664347289 0.543944160868222 0.826795124519698 -0.435155328694577 -2.21929217634235 -0.236071765816808 0.695568595710239 -0.147544853635505 -0.421556724672872 0.189700526102792 0.274011871037367 -0.274011871037367 -0.147161620249439 0.515065670873036 0.294323240498878 0.392430987331837 0.490538734164797 0.269796303790638 0.392430987331837 0.588646480997756 0.367904050623597 0.588646480997756 0.416957924040077 -0.490538734164797 -0.539592607581276 -0.0490538734164796 0.367904050623597 -0.122634683541199 0.466011797456557 0.613173417705996 0.637700354414235 0.0735808101247195 0.318850177207118 1.27540070882847 -2.30553205057454 -1.76593944299327 1.27540070882847 -0.0245269367082398 1.15276602528727 0.956550531621353 0.539592607581276 -0.171688556957679 -0.245269367082398 0.981077468329593 -0.735808101247195 -1.25087377212023 -0.833915848080154 1.49614313920263 -1.47161620249439 -2.20742430374158 -2.10931655690862 0.662227291122475 0.735808101247195 -1.10371215187079 -1.79046637970151 -2.37911286069926 -1.91310106324271 -3.06586708852998 -1.34898151895319 -2.1583704303251 -1.71688556957679 -1.05465827845431 -2.4036397974075 -2.20742430374158 -1.07918521516255 -0.932023594913113 -3.09039402523822 -3.23755564548766 -1.83952025311799 -1.81499331640975 0.466011797456557 -0.760335037955435 0.539592607581276 1.25087377212023 -0.858442784788394 0.245269367082398 0.662227291122475 -1.07918521516255 -0.686754227830715 -0.539592607581276 -0.0245269367082398 -2.20742430374158 -2.1583704303251 -2.79607078473934 -2.84512465815582 -0.564119544289516 0.490538734164797 0.490538734164797 -0.907496658204873 -0.343377113915358 0.588646480997756 -1.22634683541199 1.39803539236967 0.220742430374158 0.637700354414235 -0.466011797456557 0.637700354414235 0.662227291122475 1.22634683541199 1.71688556957679 0.735808101247195 -0.0245269367082398 -2.50174754424046 -4.70917184798205 -2.06026268349215 -4.66011797456557 -4.16957924040077 -3.06586708852998 -2.7715438480311 -1.49614313920263 -3.1394478986547 -2.69796303790638 0.539592607581276 0.196215493665919 0.686754227830715 -0.515065670873036 -0.466011797456557 -0.662227291122475 0.367904050623597 1.00560440503783 -0.0245269367082398 0 0.981077468329593 -0.367904050623597 1.15276602528727 0.760335037955435 0.490538734164797 -2.6489091644899 -0.682641705210451 0.327877452523345 0.065575490504669 -0.646386977831737 -0.55270770568221 0.735808101247195 -1.01173613921489 0.674490759476595 0.700432711764157 -2.20506594444271 1.24521370980294 0.752316616339279 0.0697749061527512 0.302357926661922 0 2.03669758743913 -0.521197405050096 0.199281360754448 0.72266867086778 -0.491414696190091 0.587770518972461 -0.674490759476595 NA -0.75
[+] Show/hide bicluster #496 motif PSSM #1. bicluster 496 motif PSSM #1 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 1 0 0 0
2 0 1 0 0
3 0 0 1 0
4 0.888889 0 0 0.111111
5 0 0.111111 0 0.888889
6 0 0 0.888889 0.111111
7 0 0.888889 0.111111 0
8 0.888889 0.111111 0 0
9 0 0.111111 0.888889 0
10 1 0 0 0
11 0 0.111111 0.888889 0
12 0 0.888889 0.111111 0
13 0 0 1 0
14 0.333333 0.444444 0.111111 0.111111
15 0.777778 0.222222 0 0
16 0 0.111111 0.777778 0.111111
17 0 0.777778 0.222222 0
18 0 0 1 0
19 0.888889 0 0 0.111111
20 0 0 0 1
21 0 0 1 0
22 0.888889 0 0.111111 0
23 0 0.111111 0.888889 0
24 0 0 0.888889 0.111111 [+] Show/hide bicluster #496 motif PSSM #2. bicluster 496 motif PSSM #2 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 0 0.714286 0 0.285714
2 0 0 1 0
3 1 0 0 0
4 0 1 0 0
5 0.02631 0.045118 0.902261 0.02631
6 0.883453 0.045118 0.045118 0.02631
7 0.02631 0.045118 0.045118 0.883453
8 0.02631 0.045118 0.902261 0.02631
9 0 1 0 0
10 1 0 0 0
11 0 0 1 0
12 1 0 0 0
13 0 0 1 0
14 0 1 0 0
15 0.142857 0 0.857143 0
16 0.428571 0.285714 0.142857 0.142857
17 1 0 0 0
18 0 0 1 0
19 0 1 0 0
20 0 0 1 0
21 1 0 0 0
22 0 0.142857 0 0.857143
23 0 0.142857 0.857143 0
24 1 0 0 0 |