GENES 2867:::H37Rv..7H9.shake.replicate.1 2885:::Strain.9802501..replicate.2 2885:::Strain.H37Ra..replicate.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.4 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.5 4084:::High.iron.wt.vs.high.iron.ideR.KO.2a 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.vs..MTB1254.rep2 4089:::MTB1254.vs..MTB1254.rep3 4089:::MTB1254.vs..MTB1254.rep4 4089:::MTB1254.vs..MTB1254.rep6 4101:::H37Rv.Day.0.rep.2 4101:::NRP.Day14..1 4107:::Mtm.0.2ug.mL.vs.ctrl.12h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.2 4107:::Palmitate.Glucose..2 4107:::pH4.8vspH6.8..2h.A 4107:::pH5.6vspH6.8..5h. 4107:::UV.40J.vs.8h.2 4107:::UV.60J.vs.ctrl.6h.1 4107:::X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054. 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.NamvspH5.6..7h. 4107:::X0.1mg.mL.TriclosanvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2mg.mL.AmpvsEtOH..6hB 4107:::X0.2mg.mL.AmpvsEtOH..6hC 4107:::X0.2mg.mL.TLMvsEtOH..6hA 4107:::X0.2ug.mL.Mtmvsctrl..2h. 4107:::X0.2ug.mL.Mtmvsctrl..2h.C 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.4ug.mL.INHvsEtOH..6h 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X0.5ug.mLRifapentinevsEtOH.6hA 4107:::X100ug.mL.Cphx.DMSO..6h 4107:::X10ug.mL.capreomycinvsEtOH..6h 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.clotrimvsEtOH..6h 4107:::X10ug.mL.Nvb.DMSO..6h..1 4107:::X10ug.mL.TetvsEtOH..6h 4107:::X10ug.mL.TetvsEtOH..6hA 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X2ug.mL.SMvsEtOH..6hA 4107:::X40ug.mL.5CL.pH5.6..4h..3 4107:::X4mM.H2O2.ctrl..2h...1 4107:::X4mM.H2O2vsctrl..4h.A 4107:::X50ug.mL.RoxvsEtOH..6h 4107:::X50ug.mL.RoxvsEtOH..6hA 4107:::X5ug.mL.CapvsEtOH..6hA 4107:::X5ug.mL.TetvsEtOH..6h 4363:::H37Rv.hypoxia.4.day.rep.4 4363:::H37Rv.hypoxia.4hr.rep.4 4364:::H37dosR.mutant.hypoxia.8hr.rep.3 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.2 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.4 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.5 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Whole.Lung.Surfactant.30min.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.3 4615:::AA_10uM_10.min_01 4615:::AA_30uM_10.min_06 4615:::AA_30uM_1h_07 4615:::AA_30uM_1h_08 4615:::AA_30uM_24h_02 4615:::AA_30uM_2h_03 4615:::AA_30uM_2h_09 4615:::AA_30uM_30min_05 4615:::AA_30uM_30min_08 4615:::AA_30uM_4h_04 4615:::Acetate.3mM.2h.06 4615:::CHP.AA.2h.1 4615:::CK_LA_2h.3 4615:::CK.for.MDG.OA.4h 4615:::CK.PA.Na.2h.01 4615:::ETYA_10uM_1h_02 4615:::ETYA_30uM_10min.01 4615:::ETYA_30uM_10min.06 4615:::L2A_30uM_10min_06 4615:::L2A_30uM_1h_02 4615:::L2A_30uM_1h_03 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_4h_04 4615:::L2A_30uM_4h_06 4615:::MAPP_5uM_30m_01 4615:::MTB1254_Bottom_10D_03 4615:::MTB1254_Bottom_42D_02 4615:::MTB1254_Pellicle_10D_01 4615:::MTB1254.0465.4._SDS_60MIN_01 4615:::MTB1254.0485.1._LA_10m_01 4615:::MTB1254.0485.1._OA_30m_02 4615:::MTB1254.0485.1._PA_10m_01 4615:::MTB1254.0485.1._PA_10m_02 4615:::MTB1254.0485.1._PA_10m_03 4615:::MTB1254.0485.1._PA_10m_04 4615:::MTB1254.0485.1._PA_12h_03 4615:::MTB1254.0485.1._PA_12h_04 4615:::MTB1254.0485.1._PA_30m_01 4615:::MTB1254.0485.1._PA_30m_02 4615:::MTB1254.0485.1._PA_4h_01 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.3524.2._INH_20MIN 4615:::MTB1254.B4.1._OA_10MIN_02 4615:::MTB1254.B4.1._OA_30MIN_02 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_10MIN_01 4615:::MTB1254.B4.1._PA_30MIN_01 4615:::MTB1254.B4.1._PA_30MIN_03 4615:::MTB1254.B4.1._PA_30MIN_04 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._PA_4h_03 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_02 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_01 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_02 4615:::MTB1254.Rv3524.2.compl._PA50.OA30_30m_02 4615:::MTB1254TA1_OA.30min_01 4615:::MTB1254TA1_OA.30min_03 4615:::MTB1254vsMTB1254.0485.1. 4615:::MTB1254vsMTB1254B4 4615:::MTB1370_PA50_1h_02 4615:::MTB1370_PA50_1h_04 4615:::MTB6548_PA50_1h_01 4615:::MTB6548_PA50_1h_02 4615:::MTB889_PA50_1h_01 4615:::MTB889_PA50_1h_02 4615:::OA_50uM_10min_04 4615:::OA_50uM_24h_06 4615:::OA_50uM_2h_06 4615:::OA_50uM_2h_07 4615:::OA_50uM_2h..0.5.BSA.10mMGlu._30min_01 4615:::OA_50uM_2h..1.0..BSA.10mMGlu._30.min._01 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::OA_50uM_2h.1.5..BSA_30min_01 4615:::OA_50uM_4h_04 4615:::PA_100uM_2h_03 4615:::PA_100uM_2h_04 4615:::PA_100uM_2h_T0_05 4615:::PA_5.uM_10min_02 4615:::PA_50uM_10.min_03 4615:::PA_50uM_10min_04 4615:::PA_50uM_10min_08 4615:::PA_50uM_10min_09 4615:::PA_50uM_2h_01 4615:::PA_50uM_30.min_07 4615:::PA_50uM_30min_09 4615:::PA_50uM_4h_07 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.AA_30uM_30min_02 4615:::PA_50uM.MAPP_30m_01 4615:::PA_50uM.OA_10uM_4h_03 4615:::PA_50uM.OA_30uM_2h_03 4615:::PA_50uM.OA_30uM_30min_02 4615:::PA_50uM.OA_30uM_4h_03 4615:::Rv_OA_10min 4615:::Rv_OA30_30mim_01 4615:::Rv_TA_OA30_30mim_03 4615:::Rv.MT106_100503_02 4615:::Rv.MT90_100503_02 4615:::Rv.MT90_100603_01 4615:::Rv.MT90_100803_01 4615:::Rv.MT96_100503_02 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Rv.p0485.1._OK 4615:::Rv.pMV261Km._300uM.PA_10m 4615:::SDS_60min_01 4615:::Spe_100uM_30M_01 4615:::TBD042 4615:::TBD1113 4615:::TBD1115 4615:::TBD1116 4615:::TBD1137 4615:::TBD817 4615:::TBE060 4615:::Test.1 4615:::Test.4 4615:::Tet_20uM_30M_01 4615:::Tet_50ng_30M_01 4615:::WM_1254_10d_02 4615:::WM_1254.whiB4._10d_02 4615:::WM_1254.whiB4._10d_03 4615:::WM_1254.whiB4._14d_01 4615:::WM_1254.whiB4._20d_01 4615:::X7H9_MTB1254.3524.1._OA100_10M_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4638:::CDC1551.wild.type.vs.kstR.null.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.1 4731:::X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A 4731:::X5ug.ml.Rifampicin.vs.DMSO.2.5hrs 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2 Raghavan_Nature2008:::Complemented.espR.mutant..R...rep3 Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages...IFNg.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.48hrs RV0541C NA -0.174062131477831 0.174062131477831 0.745489786789921 0.319495622909966 NA NA NA NA 0.0217577664347289 -1.43891362021674 -0.831871936687801 -0.809388911371914 -0.89932101263546 -1.95602320248213 -1.6637438733756 -0.134898151895319 0 1.05670218984667 1.19160034174198 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-0.492897093463666 -0.518839045751227 -0.596664902613911 -1.29709761437807 -2.02347227842979 -0.830142473201963 -0.518839045751227 1.06362004379002 0.752316616339279 2.02347227842979 -0.466955141176104 -0.648548807189034 -2.6201371810437 -1.1414459006527 -0.89932101263546 -0.580811487327068 0 0 NA 0.889101455673694 0.397776601742607 -0.298545090260132 -0.453346248172793 NA 0.499622784797478 NA 0.44966050631773 -0.149886835439243 0.599547341756973 -1.17411354427407 1.54883063287218 0.174867974679117 -0.44966050631773 -0.824377594915839 -0.89932101263546 -0.324754810118361 -2.52309506322726 1.19909468351395 0.799396455675965 0.399698227837982 0.374717088598108 -0.299773670878487 NA -0.699471898716469 -2.07343455690953 -1.07418898731458 0.0999245569594955 -0.174867974679117 0.649509620236721 -0.399698227837982 1.29901924047344 0.274792531638613 -1.0492078480747 -0.824377594915839 -0.724453037956343 -1.44890607591269 -1.24905696199369 -1.17411354427407 -0.624528480996847 -1.47388721515256 -1.02422670883483 -1.07418898731458 -0.749434177196217 -1.67373632907155 -2.34822708854815 0.624528480996847 -0.0249811392398739 -0.524603924037352 -1.12415126579433 -0.174867974679117 -0.649509620236721 -0.224830253158865 -1.29901924047344 -1.07418898731458 -0.549585063277226 -0.0999245569594957 -0.174867974679117 -1.44890607591269 -0.774415316436091 -0.674490759476595 2.07343455690953 0 -1.29901924047344 0.424679367077856 -1.22407582275382 -0.999245569594956 -2.17335911386903 -4.82135987329566 -0.799396455675965 -1.57381177211206 -1.49886835439243 0 1.67373632907155 0.799396455675965 0.599547341756973 1.99849113918991 0.849358734155712 0.749434177196217 0.324754810118361 -1.02422670883483 NA NA NA -0.124905696199369 0.624528480996847 NA -0.549585063277226 -0.299773670878487 -1.0492078480747 -1.39894379743294 NA NA 0.0249811392398739 -1.52384949363231 -1.29901924047344 -0.224830253158865 -1.09917012655445 -0.624528480996847 2.99773670878487 -0.699471898716469 -0.174867974679117 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POSITION A C G T 1 0 0 0 1 2 0 0.25 0 0.75 3 0 0 1 0 4 1 0 0 0 5 0 0 0 1 6 0.5 0 0 0.5 7 0 0.25 0 0.75 8 0 0.5 0 0.5 9 0.5 0.25 0.25 0 10 0 0.5 0 0.5 11 0 1 0 0 12 0 0 1 0 13 0.75 0 0.25 0 14 0 0 0 1