GENES 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.6 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X0.5ug.mL..111895vsDMSO.6h 4107:::X2ug.mL..111891vsDMSO..6h 4107:::X40ug.mLProcept6778vsDMSO.6hA 4107:::X50ug.mL.PA.21vsDMSO..6h 4364:::H37dosR.mutant.hypoxia.12hr.rep.3 4364:::H37dosR.mutant.hypoxia.8hr.rep.2 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.3 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4575:::Extracted.Lung.Surfactant.30min.rep.1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4615:::AA_10uM_2h_T0_01 4615:::AA_30uM_1h_01 4615:::AA_30uM_1h_05 4615:::AA_30uM_1h_06 4615:::AA_30uM_1h_07 4615:::AA_30uM_24h_02 4615:::AA_30uM_24h_03 4615:::AA_30uM_24h_T0_01 4615:::AA_30uM_30min_03 4615:::AA_30uM_30min_04 4615:::AA_30uM_30min_06 4615:::AA_30uM_30min_08 4615:::AA_3uM_10.min_01 4615:::AA_60uM_24h_01 4615:::AA_60uM_24h_03 4615:::Acetate.3mM.10m.07 4615:::Acetate.3mM.2h.01 4615:::Acetate.3mM.2h.02 4615:::Acetate.3mM.30m.01 4615:::CA_50uM_10min_01 4615:::CHP_25uM_2h_01 4615:::CK_AA_NA.2h 4615:::CK_LA_2h 4615:::CK_LA_2h.3 4615:::CK_OA_NA_2h.02 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.2.2h.for.OA.NA.and.PA.NA 4615:::CK.4h.for.AA.NA.0.03mM 4615:::CK.4h.for.OA.NA.0.05mM 4615:::CK.for.AA.NA.24h 4615:::CK.for.AA.NA.2h.2 4615:::CK.for.MDG.24h.PA.NA 4615:::CK.for.MDG.4h.PA.NA 4615:::CK.for.OA.4h.1 4615:::CK.for.OA.NA..2h 4615:::CK.MDG.2h.for.PA.NA 4615:::CK.MDG.AA.Na.2h 4615:::CK.PA.NA.101801.2 4615:::CK.PA.Na.2h.01 4615:::CK.PA.NA.2h.3..101801 4615:::ETYA_3uM.AA_1h_02 4615:::L2A_30uM_1h_01 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_1h_07 4615:::L2A_30uM_1h_09 4615:::L2A_30uM_2h_03 4615:::L2A_30uM_30min_02 4615:::L2A_30uM_30min_03 4615:::L2A_30uM_30min_04 4615:::L2A_30uM_30min_05 4615:::LAA_50uM_10min_01 4615:::LAA_50uM_10min_02 4615:::LAA_50uM_30min_01 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_02 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261.3524_01 4615:::MDA_1254.pMV261.3524_04 4615:::MDG_1254.pMV261_01 4615:::MDG_1254.pMV261_02 4615:::MDG_1254.pMV261_03 4615:::MDG_1254.pMV261_04 4615:::MDG_1254.pMV261.3524_01 4615:::MDG_1254.pMV261.3524_02 4615:::MDG_1254.pMV261.3524_03 4615:::MDG_1254.pMV261.3524_04 4615:::MT1254.whiB4_CK_01 4615:::MTB1254_Bottom_10D_02 4615:::MTB1254_Bottom_10D_04 4615:::MTB1254_Bottom_14D_01 4615:::MTB1254_Bottom_14D_02 4615:::MTB1254_Bottom_14D_03 4615:::MTB1254_Bottom_14D_04 4615:::MTB1254_Bottom_21D_02 4615:::MTB1254_Bottom_21D_03 4615:::MTB1254_Bottom_21D_04 4615:::MTB1254_Pellicle_14D_01 4615:::MTB1254_Pellicle_14D_02 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254_Pellicle_14D_04 4615:::MTB1254_Pellicle_21D_01 4615:::MTB1254_Pellicle_21D_04 4615:::MTB1254_Pellicle_42D_01 4615:::MTB1254_Pellicle_42D_02 4615:::MTB1254_Pellicle_42D_03 4615:::MTB1254_Pellicle_42D_04 4615:::MTB1254.0485.1._PA_30m_01 4615:::MTB1254.0485.1._PA_30m_02 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.1683._01 4615:::MTB1254.3524.1._OA_10min_02 4615:::MTB1254.3524.1._OA_10min_03 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254.3524.1._PA_12h_01 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_03 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254.3524.2._INH_20MIN 4615:::MTB1254.B4.1._OA_30MIN_01 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_30MIN_01 4615:::MTB1254.B4.1._PA_30MIN_03 4615:::MTB1254.B4.1._PA_4h_01 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_4h_03 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB1254.Rv0465c.4._PA50.OA30_30m_01 4615:::MTB1254.whiB4_SDS_90MIN_01 4615:::MTB1254TA1_OA.30min_03 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB1370_PA50_1h_01 4615:::OA_50uM_1h_01 4615:::OA_50uM_1h_02 4615:::OA_50uM_1h_04 4615:::OA_50uM_1h_05 4615:::OA_50uM_1h_06 4615:::OA_50uM_1h_09 4615:::OA_50uM_2h_05 4615:::OA_50uM_2h_08 4615:::OA_50uM_2h..1.5.BSA.10mMGlu._30.min_01 4615:::OA_50uM_30min_02 4615:::OA_50uM_30min_04 4615:::OA_50uM_30min_05 4615:::OA_50uM_30min_06 4615:::OA_50uM_4h_01 4615:::PA_10uM_2h_T0_01 4615:::PA_25uM_2h_T0_01 4615:::PA_50uM_10min_07 4615:::PA_50uM_12h_03 4615:::PA_50uM_12h_04 4615:::PA_50uM_1h_03 4615:::PA_50uM_1h_04 4615:::PA_50uM_1h_10 4615:::PA_50uM_1h_12 4615:::PA_50uM_24h_07 4615:::PA_50uM_24h_08 4615:::PA_50uM_30.min_05 4615:::PA_50uM_30.min_06 4615:::PA_50uM_30.min_07 4615:::PA_50uM_30min_01 4615:::PA_50uM_30min_03 4615:::PA_50uM_30min_10 4615:::PA_50uM_30min_11 4615:::PA_50uM_3d_01 4615:::PA_50uM_3d_02 4615:::PA_50uM_3d_03 4615:::PA_50uM_3d_04 4615:::PA_50uM_3d_05 4615:::PA_50uM_3d_06 4615:::PA_50uM_4h 4615:::PA_50uM_4h_01 4615:::PA_50uM_4h_02 4615:::PA_50uM_4h_04 4615:::PA_50uM_4h_T0_01 4615:::PA_50uM.0.5.BSA_1h_01 4615:::PA_50uM.AA_30uM_2h_02 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_50uM.AA_30uM_30min_04 4615:::PA_50uM.MAPP_30m_01 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_10uM_30min_03 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_30uM_24h_02 4615:::PA_50uM.OA_30uM_2h_01 4615:::PA_50uM.OA_30uM_2h_02 4615:::PA_50uM.OA_30uM_30min_03 4615:::PA_5uM_2h_T0_01 4615:::Rv_OA30_30mim_01 4615:::Rv_Rv3524.1 4615:::Rv_Rv3524.1_OA_10min 4615:::Rv_TA_OA30_30mim_01 4615:::Rv_TA_OA30_30mim_03 4615:::Rv.MT106_100503_02 4615:::Rv.MT106_100603_01 4615:::Rv.MT71_100503_02 4615:::Rv.MT71_100603_01 4615:::Rv.MT90_100603_01 4615:::Rv.MT96_100503_02 4615:::Rv.MT96_100603_01 4615:::TBD094 4615:::TBD1111 4615:::TBD1115 4615:::TBD1266 4615:::TBD1267 4615:::TBD1268 4615:::TBD817 4615:::TBD818 4615:::TBD819 4615:::TBE055 4615:::TBE056 4615:::TBE057 4615:::TBE058 4615:::TBE059 4615:::TBE283 4615:::TBE285 4615:::TBE733 4615:::TBE736 4615:::TBF466 4615:::Test_261B4.1 4615:::Test_361.3 4615:::Test_ceramide_5uM 4615:::Test.1 4615:::WM_1254_vs_1254whiB4_20day 4615:::WM_T0_01 4615:::WT_WhiB4_PA_10min_01 4615:::X2.2..Dipyridyl_0.2mM.Dpd.AA_50uM_01 4615:::X2.2..Dipyridyl_1mM_20min_01 4615:::X7H9_MTB1254_OA50_10M_01 4615:::X7H9_MTB1254.3524.1._OA50_10M_01 4615:::X7H9_PA100um_4h_T0_01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.3 4815:::H37Rv.reaeration.for.24hrs.rep.5 4815:::H37Rv.reaeration.for.6hrs.rep.2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.6.5.7H9.broth.for.2.hr RV0211 -0.477612375629373 -0.134898151895319 -0.166028494640393 -0.197158837385466 1.42161898535836 -0.45657836026108 0.786905886056028 0.305126772144174 0.0326366496520933 2.21929217634235 0.250214313999382 -1.93549522284588 0 -1.01173613921489 0.246448546731833 0.479926117319885 0.311303427450736 0.972823210783551 -0.972823210783551 -1.02470711535867 -1.12847492450892 0.453984165032324 0.479926117319885 0.0648548807189033 0.155651713725368 -0.843113449345744 -0.972823210783551 -0.907968330064648 -0.116738785294026 0.0907968330064647 0 -1.59543006568502 -0.687461735620376 -1.1414459006527 -1.15441687679648 -1.85484958856064 -1.50463323267856 -1.40086542352831 -0.557751974182569 -0.661519783332815 -0.843113449345744 -0.505868069607446 -0.674490759476595 -1.24521370980295 -0.804200520914402 -1.01173613921489 -0.998765163071112 -0.687461735620376 -1.2063007813716 -1.19332980522782 -1.0765910199338 -1.02470711535867 -0.95985223463977 NA 0.285361475163175 0.246448546731833 0.557751974182569 0.233477570588052 -0.298332451306956 -0.0778258568626841 0.207535618300491 0.350216355882078 0.129709761437807 1.78999470784173 0.19456464215671 2.010501302286 0.778258568626841 0.700432711764157 0.324274403594517 0.479926117319885 0.259419522875614 -0.713403687907937 -0.804200520914402 -0.856084425489525 -1.11550394836514 -0.661519783332815 -0.609635878757692 -0.635577831045253 -0.95985223463977 -0.920939306208428 -1.10253297222136 -1.0765910199338 -0.609635878757692 -0.337245379738298 -0.622606854901473 -0.752316616339279 -1.11550394836514 -1.19332980522782 -0.946881258495989 -0.492897093463666 -0.726374664051718 -1.01173613921489 -0.972823210783551 -1.16738785294026 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-0.920939306208428 -0.869055401633306 -0.596664902613911 -0.37615830816964 -0.0907968330064648 -0.518839045751227 -0.907968330064648 -0.843113449345744 -0.778258568626841 -0.843113449345744 -0.492897093463666 -1.27115566209051 -0.752316616339279 -0.402100260457201 -0.583693926470131 -1.29709761437807 -0.648548807189034 -0.505868069607446 -0.661519783332815 0.907968330064648 -1.03767809150245 -0.843113449345744 -1.16738785294026 -0.0259419522875614 0.88631430377503 1.05354341769485 -0.46266721517816 -0.0498392186805366 -0.89932101263546 -1.17411354427407 -0.949283291115208 1.07418898731458 -0.224830253158865 0.349735949358235 -1.30278352172877 0.0831563950039637 -0.138593991673273 0.0518839045751227 -0.610253544288348 0.500132603965639 -0.0358922223715373 RV0467 -0.816988807253341 -0.0709990273133258 -0.0709990273133258 -0.780989300446584 4.50843823439619 -0.514742948021612 0.674490759476595 0.674490759476595 0.0871790777554783 1.32603965638596 0.738727974664842 -1.27722718283866 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POSITION A C G T 1 1 0 0 0 2 1 0 0 0 3 1 0 0 0 4 0 1 0 0 5 0 0 0 1 6 1 0 0 0 7 0 0 1 0 8 1 0 0 0 9 1 0 0 0 10 0 1 0 0 11 0.333333 0 0.666667 0 12 0 0.333333 0 0.666667 13 0 0 1 0 14 0 0 0 1 15 0 0 0 1 16 0.666667 0 0 0.333333 17 0 1 0 0 18 1 0 0 0 19 0 0 0.333333 0.666667 20 0 0 0 1 21 0 0 0 1 22 0 1 0 0 23 0 0 0 1 24 0.333333 0 0 0.666667

POSITION A C G T 1 0.714286 0 0 0.285714 2 0 0 1 0 3 0 1 0 0 4 0 0 0.285714 0.714286 5 0.142857 0.714286 0.142857 0 6 0.714286 0.142857 0.142857 0 7 0.285714 0.571429 0.142857 0 8 0.714286 0.142857 0 0.142857 9 0 0.857143 0.142857 0 10 0.142857 0.571429 0.285714 0 11 0.571429 0.285714 0 0.142857 12 0 0.285714 0.714286 0 13 0.428571 0.285714 0.285714 0 14 0.285714 0.285714 0.285714 0.142857 15 0 0 0.714286 0.285714 16 0 0 1 0 17 0 0.285714 0.714286 0 18 0.285714 0.714286 0 0 19 1 0 0 0 20 0 0.285714 0.571429 0.142857 21 1 0 0 0 22 0.571429 0 0.428571 0 23 0.571429 0.285714 0 0.142857