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[+] Show/hide bicluster #541 rows and columns.
bicluster 541
Mycobacterium tuberculosis H37Rv
17x156
[+] Show/hide bicluster #541 rows (genes).
bicluster 541 genes
Mycobacterium tuberculosis H37Rv
17
[+] Show/hide bicluster #541 rows (short gene names).
bicluster 541 short names
Mycobacterium tuberculosis H37Rv
17
short_name
[+] Show/hide bicluster #541 rows (long gene names).
bicluster 541 long names
Mycobacterium tuberculosis H37Rv
17
long_name
[+] Show/hide bicluster #541 rows (NCBI RefSeq gene IDs).
bicluster 541 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
30
[+] Show/hide bicluster #541 gene upstream sequences.
bicluster 541 upstream sequences
Mycobacterium tuberculosis H37Rv
17
upstream
[+] Show/hide bicluster #541 columns (arrays; conditions).
bicluster 541 arrays
Mycobacterium tuberculosis H37Rv
156
[+] Show/hide bicluster #541 ratios.
bicluster 541 ratios
Mycobacterium tuberculosis H37Rv
17x156
GENES 2885:::Strain.H37Ra..replicate.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.5 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3 4062:::MTB1254.Day.0.rep.3 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4 4099:::H37Rv.hypoxia.2hr.rep.2 4101:::H37Rv.Day6.1 4101:::NRP.Day14..3 4101:::NRP.Day14..6 4107:::X0.5uMValinomycin.70mMKClvsDMSO.6h 4107:::X10ug.mL..241vsDMSO..6h 4107:::X150uM.Deferroxaminevsctrl..6hB 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X2ug.mL..121940vsDMSO..6hA 4363:::H37Rv.hypoxia.4.day.rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6 4583:::X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3 4615:::AA_30uM_24h_03 4615:::AA_30uM_24h_04 4615:::AA_30uM_30min_07 4615:::AA_30uM_4h_01 4615:::AA_30uM_4h_05 4615:::AA_3uM_10.min_01 4615:::AA_60uM_24h_01 4615:::aceatate.induction.3 4615:::Acetate.3mM.10m_04 4615:::Acetate.3mM.10m.01 4615:::Acetate.3mM.10m.02 4615:::CA_50uM_10min_01 4615:::CK_OA_NA_2h.02 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.2.2h.for.OA.NA.and.PA.NA 4615:::CK.4h.for.OA.NA.0.05mM 4615:::CK.AA.Na.2h 4615:::CK.LA.2h.4 4615:::CK.MDG.2h.for.PA.NA.2 4615:::CK.PA.NA.101801.2 4615:::CK.PA.Na.4h.2 4615:::Glucose_5mM_10min_01 4615:::MDG_1254.pMV261.3524_03 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254_Pellicle_56D_01 4615:::MTB1254_SDS_90MIN_03 4615:::MTB1254.0485.1._Act_2h_01 4615:::MTB1254.0485.1._PA_30m_01 4615:::MTB1254.0485.1._PA_30m_04 4615:::MTB1254.0485.1._PA_4h_01 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.3219.2._01 4615:::MTB1254.3219.3._01 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_03 4615:::MTB1254.3524.1._PA_12h_04 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.3524.1.T0_WtT0_02 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254vsMTB1254.0485.1. 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB889_PA50_1h_01 4615:::MTB889_PA50_1h_02 4615:::OA_100uM_2h_T0_01 4615:::OA_50uM_10min_05 4615:::OA_50uM_1h_10 4615:::OA_50uM_24h_04 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::PA_100uM_24h_01 4615:::PA_100uM_4h_T0_01 4615:::PA_50uM_1h_01 4615:::PA_50uM_1h_09 4615:::PA_50uM_1h_12 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_06 4615:::PA_50uM_2h_T0_01 4615:::PA_50uM_30.min_06 4615:::PA_50uM_30min_03 4615:::PA_50uM_3d_03 4615:::PA_50uM_3d_05 4615:::PA_50uM_3d_06 4615:::PA_50uM_4h_01 4615:::PA_50uM_4h_04 4615:::PA_50uM_8h_01 4615:::PA_50uM_8h_02 4615:::PA_50uM_8h_03 4615:::PA_50uM.AA_30uM_2h_01 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.MAPP_30m_01 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_10uM_24h_02 4615:::PA_50uM.OA_10uM_2h_04 4615:::PA_50uM.OA_30uM_24h_01 4615:::Rv.3524.1._01 4615:::Rv.3524.2._01 4615:::Rv.MT106_100503_02 4615:::Rv.MT90_100703_01 4615:::Rv.MT90_100803_01 4615:::Rv.MT96_100503_01 4615:::Rv.MT96_100603_01 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._OK 4615:::Rv.pMV0481.1. 4615:::Succinate_10mM_30min_01 4615:::TBD094 4615:::TBD1111 4615:::TBD1115 4615:::TBD1276 4615:::TBD625 4615:::TBD816 4615:::TBE059 4615:::Test_ceramide_5uM 4615:::Tet_5ug_30M_01 4615:::WT_85.1_PA_10min_02 4615:::X7H9_MTB1254_OA50_10M_01 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.1 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2
RV0165C 2.55 0.488424343069259 0.302357926661922 1.83461486577634 1.36247133414272 0.687980574666127 0.337245379738298 -2.13139079994604 -1.91555375691353 -1.59179819236476 -1.95602320248213 -2.30675839740996 -2.65749359233779 0.242816673411574 -0.84985835694051 -0.917307432888169 -0.0269796303790638 -1.68622689869149 -0.944287063267233 -0.634021313907999 -0.930797248077701 -1.28153244300553 1.07918521516255 -0.876837987319574 1.68622689869149 1.13314447592068 NA -1.37830720414782 -1.26100446336929 -4.39885277919519 -4.07627024205421 -2.63931166751711 -0.879770555839037 -0.439885277919519 -1.075 1.35720701601998 0.25499040907042 -0.847226197879138 -2.22875207479223 -2.11144933401369 0.615839389087326 -3.81233907530249 0.0879770555839037 2.17121787336275 NA -1.31348200529653 0.212997081939977 0.674490759476595 -2.02347227842978 -1.5264790872365 -0.461493677536618 3.12395720178634 0.141998054626652 1.10616484554162 2.24027287969012 0.289067468347112 0.178946528024403 0.0688255877016934 1.25262569617082 0.867202405041337 0.426718643750499 -0.20647676310508 1.74816992762301 -0.0412953526210161 -0.0137651175403387 0.536839584073208 0.674490759476595 -0.151416292943726 0.674490759476595 0.784611699799305 1.58298851713895 1.2801559312515 -0.178946528024403 0.784611699799305 0.839672169960659 1.25262569617082 0.371658173589144 1.72063969254233 0.812141934879982 1.22509546109014 -1.58298851713895 0.123886057863048 -0.344127938508467 -1.74816992762301 -0.977323345364046 -1.33521640141285 -1.22509546109014 -0.646960524395918 1.74816992762301 0.839672169960659 -0.454248878831176 -1.61051875221963 -0.949793110283369 -1.50039781189692 0.674490759476595 -1.94088157318775 -0.454248878831176 -0.0412953526210161 -0.20647676310508 -0.536839584073208 -2.32630486431724 -2.84937933085011 -1.58298851713895 -0.426718643750499 0.564369819153886 0.0963558227823707 -1.41780710665488 -1.30768616633217 -2.7392583905274 -0.619430289315241 -2.76678862560807 -2.05100251351046 -1.69310945746166 -1.61051875221963 -1.0323838155254 -1.58298851713895 0.977323345364046 0.922262875202691 0.61943028931524 -0.977323345364046 -1.61051875221963 -2.4914862748013 -0.0963558227823708 -1.36274663649353 -0.0688255877016934 -0.564369819153886 -2.98703050625349 1.25262569617082 1.36274663649353 -0.234006998185758 1.00485358044472 1.2801559312515 1.39027687157421 1.11497452076743 0.454248878831176 0.344127938508467 0.399188408669822 1.55545828205827 0.812141934879982 0.812141934879982 0.31659770342779 -0.619430289315241 0.674490759476595 0.922262875202691 -2.79431886068875 1.61051875221963 0.0963558227823707 1.25262569617082 0.702020994557273 0.977323345364046 0.509309348992531 0.123886057863048 0.178946528024403 -2.574306398669 -0.168622689869149 -1.38448103260985
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RV3145 0.190616953765125 -0.202347227842979 0.438418993659787 1.03983992085975 1.18035882908404 0.843113449345744 0.871217230990602 1.85484958856064 -1.29277395566347 0 -1.96726471514007 -1.99536849678493 -5.7050676739062 -2.7541706011961 -1.2084626107289 -2.55744412968209 -1.09604748414947 0.309141598093439 -2.33261387652323 -2.10778362336436 -5.25540716758847 -2.02347227842979 0.505868069607446 0.815009667700886 1.29277395566347 0.421556724672872 NA -1.73598441373484 -2.24461678973359 -4.4560619027716 -3.54936940642602 -4.50029080503236 -1.5590688046918 -0.984093075301918 -0.7 1.5463934485561 -0.641588771209444 -0.674490759476595 -1.00210055693666 -1.92711645564741 0.366152126573009 -4.0276733923031 -2.77504769613228 1.06224148593899 -0.991898175700875 -0.267470473585546 0.802411420756639 0.918702931011225 -0.825669722807556 -0.941961233062142 0.674490759476595 1.67459774766603 1.72111435176786 0.92997968352076 0.16237740505918 1.03013134174607 0.821652379726034 -0.0858442784788393 0.257532835436518 0.441484860748317 0.551856075935396 1.11597562022491 2.08478962020039 0.0613173417705995 0.392430987331837 0.821652379726034 0.527329139227156 0.956550531621353 0.784861974663674 0.919760126558993 1.14050255693315 1.20181989870375 1.04239481010019 1.00560440503783 1.26313724047435 1.18955643034963 0.858442784788394 -0.294323240498878 0.882969721496634 -2.91870546828054 -0.882969721496634 1.27540070882847 -2.23195124044982 -1.25087377212023 -1.00560440503783 -1.29992764553671 -0.637700354414235 -0.625436886060115 0.502802202518916 1.18955643034963 -1.66783169616031 -0.944287063267233 -1.07918521516255 -0.797125443017794 1.28766417718259 -1.03013134174607 -0.613173417705996 0.478275265810677 1.38577192401555 -0.919760126558993 -1.11597562022491 -0.870706253142514 -0.760335037955434 -1.98668187336743 0.833915848080154 1.42256232907791 -1.44708926578615 -1.26313724047435 -2.01120881007567 -1.28766417718259 -1.50840660755675 -1.83952025311799 NA -1.92536453159683 -0.343377113915358 -0.956550531621353 0.245269367082398 0.600909949351876 0.551856075935396 -0.784861974663674 -1.29992764553671 -0.809388911371914 -0.220742430374158 -0.429221392394197 -1.28766417718259 -0.735808101247195 -1.06692174680843 1.09144868351667 0.981077468329593 -0.122634683541199 0.968813999975473 1.16502949364139 2.42816673411574 0.711281164538955 1.29992764553671 1.71688556957679 0.466011797456557 0.686754227830715 0.613173417705996 0.613173417705996 0.613173417705996 1.11597562022491 1.14050255693315 0.662227291122475 -1.14050255693315 0.748071569601315 -0.355640582269477 1.98668187336743 -0.294323240498878 0.404694455685957 0.453748329102437 1.11597562022491 0.809388911371914 -1.56931516704888 0.831871936687801 -0.140518908224291
RV3158 -0.108788832173645 -0.605312220043098 1.31439224923644 1.53293354426499 0.633612531629529 0 0.674490759476595 -4.23089658217137 -2.00303316450625 -2.67752392398285 -3.90387075939484 -3.57684493661831 -4.1287010125537 -1.18546860756492 -0.735808101247195 -2.20742430374158 -1.22634683541199 0.613173417705996 -1.49205531641792 -0.163512911388266 -1.20590772148846 -2.51401101259458 0.102195569617666 0.0613173417705995 -0.102195569617666 0.51097784808833 NA -1.98041967676107 -2.78406824124382 -4.07564629130538 -4.39136537020932 -3.53031333683494 -2.43964742789407 -2.26743702121919 0.25 0.548023742074734 0.400478888439229 -0.210778362336436 NA NA NA NA NA 1.21625040564254 -0.674490759476595 -1.82674580691578 1.01173613921489 1.08199559332704 -2.64175547461666 -2.26235442241108 -0.365349161383156 1.12415126579433 1.05389181168218 0.409512246825076 2.20333648095688 0.569569974669125 0.824377594915839 -0.569569974669125 0.434671822773806 0.34473972151026 0.644513392388747 1.46889098730459 1.24406073414572 0.659502075932671 0.34473972151026 0.674490759476595 0.824377594915839 0.119909468351395 1.12415126579433 0.239818936702789 0.434671822773806 0.674490759476595 1.2290720506018 0.734445493652293 0.989253113899006 0.299773670878487 0.674490759476595 -0.5545812911252 0.224830253158865 -0.854354962003687 -0.314762354422411 0.359728405054184 -2.30825726576435 -1.51385703793636 -0.269796303790638 -0.419683139229881 -0.239818936702789 -1.00424179744293 0.749434177196217 0.869343645547612 -0.674490759476595 -0.34473972151026 -0.194852886071016 -0.509615240493427 1.1691173164261 -0.944287063267233 -0.0599547341756972 0.914309696179385 1.15412863288217 -0.854354962003687 -1.58880045565598 -1.79864202527092 0.34473972151026 -0.644513392388746 0.79440022782799 1.01923048098686 -0.614536025300898 -1.55882308856813 -2.66798567081853 -1.69372124046345 -2.2782798986765 -1.64875518983168 -1.94852886071016 -1.67873255691953 -1.43891362021674 -1.09417389870648 0.809388911371914 0.749434177196217 0.854354962003687 -0.0149886835439244 -0.944287063267233 -1.00424179744293 -0.0749434177196216 0 -1.6637438733756 -0.869343645547611 -2.00848359488586 1.0492078480747 0.89932101263546 -1.15412863288217 1.01923048098686 1.61877782274383 1.63376650628775 0.0149886835439244 1.00424179744293 2.86283855688955 0.854354962003687 1.1691173164261 0.68947944302052 0.68947944302052 0.89932101263546 1.25904941768964 0.884332329091536 0.539592607581276 -2.08342701260548 0.524603924037352 -0.239818936702789 2.24830253158865 -0.479637873405579 0.509615240493428 0.119909468351395 0.569569974669125 0.929298379723309 -1.17750081739134 0.251505028957374 -1.03013134174607
[+] Show/hide bicluster #541 motif PSSM #1. bicluster 541 motif PSSM #1 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 0.75 0 0 0.25
2 0 0.5 0 0.5
3 1 0 0 0
4 0.75 0 0.25 0
5 0 1 0 0
6 0.75 0.25 0 0
7 0 0 0 1
8 0 0.75 0 0.25
9 0.75 0 0.25 0
10 0 0.25 0 0.75
11 0.25 0 0.5 0.25
12 0.5 0.5 0 0
13 0 0 0.25 0.75
14 0 0 0 1
15 0 0 0 1
16 0.75 0.25 0 0
17 0.296043 0.078957 0.078957 0.546043
18 0.296043 0.578957 0.078957 0.046043
19 0.296043 0.078957 0.078957 0.546043
20 0.296043 0.078957 0.578957 0.046043
21 1 0 0 0
22 0 0.25 0 0.75
23 1 0 0 0
24 0 0 0 1 [+] Show/hide bicluster #541 motif PSSM #2. bicluster 541 motif PSSM #2 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 0 1 0 0
2 0 0.2 0.6 0.2
3 0 0.4 0 0.6
4 0.4 0.2 0 0.4
5 0.8 0 0.2 0
6 0 0.2 0.8 0
7 0 0 0 1
8 0 0.4 0.6 0
9 1 0 0 0
10 0.4 0.4 0.2 0
11 1 0 0 0
12 0.2 0 0.8 0
13 0 0.4 0.6 0
14 0.6 0.2 0.2 0
15 0.6 0 0 0.4
16 0 0 0.8 0.2
17 0 0 0.8 0.2
18 0.2 0.4 0.4 0
19 0.8 0 0 0.2
20 0.8 0.2 0 0
21 0 0 1 0
22 0 0 1 0
23 0.8 0 0 0.2 |