GENES 2867:::H37Rv..7H9.shake.replicate.4 2867:::H37Rv..Sauton.s.media.replicate.2 2867:::H37Rv..Youman.media.replicate.4 2885:::Strain.1843..replicate.1 2885:::Strain.9800608...replicate.3 2885:::Strain.9802826..replicate.4 4055:::H37Rv.Vs.M.bovis.rep2 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.1 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.3 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.4 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.2 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.vs..MTB1254.rep5 4089:::MTB1254.vs..MTB1254.rep6 4101:::H37Rv.Day.0.rep.1 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6 4101:::H37Rv.Day6.1 4101:::H37Rv.Day6.2 4101:::H37Rv.Day8.2 4101:::NRP.Day14..1 4101:::NRP.Day14..6 4101:::NRP.Day14..7 4101:::NRP.Day20..1 4101:::NRP.Day20..2 4107:::DIPED..100ug.mL..DMSO..12h..1 4107:::DIPED..50ug.mL..DMSO..12h 4107:::DIPED.10ug.mL.vs.DMSO.12h.1 4107:::EMB.10ug.mL.vs.DMSO.12h.2 4107:::UV.40J.vs.ctrl.8h.1 4107:::X.241..1ug.mL..DMSO..12h..1 4107:::X0.13mg.mL.TLMvsDMSO..6hA 4107:::X0.1ug.mL.RifpvsEtOH..6h 4107:::X0.4ug.mL.INHvsEtOH..6h 4107:::X0.4ug.mL.INHvsEtOH..6hA 4107:::X0.5ug.mL..111895vsDMSO..6h 4107:::X0.5ug.mL..111895vsDMSO.6h 4107:::X0.5ug.mL.CeruleninvsDMSO..6hB 4107:::X100ug.mL.Ceph.DMSO..6h 4107:::X10mM.succinatevs10mM.glucose 4107:::X10ug.mLMethoxatinvsDMSO.6h 4107:::X12ug.mLEthionamidevsEtOH.6h 4107:::X12ug.mLEthionamidevsEtOH.6hA 4107:::X20ug.mL.Cephalexin.Ctrl..6h..1 4107:::X20ug.mL.Prcp.6778.DMSO..6h..1 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X2mM.DTTvsDMSO..6h.A 4107:::X40ug.mL.5CL.pH5.6..2h..2 4107:::X50ug.mL.PA.21vsDMSO..6h 4107:::X50ug.mL.PA.21vsDMSO..6hA 4107:::X5ug.mL.CapvsEtOH..6h 4363:::H37Rv.hypoxia.1.day.rep.2 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.1.day.rep.7 4363:::H37Rv.hypoxia.1.day.rep.9 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4.day.rep.2 4363:::H37Rv.hypoxia.4.day.rep.3 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4.day.rep.6 4363:::H37Rv.hypoxia.4hr.rep.6 4363:::H37Rv.hypoxia.7.day.rep.1 4363:::H37Rv.hypoxia.7.day.rep.2 4363:::H37Rv.hypoxia.7.day.rep.3 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.7.day.rep.6 4363:::H37Rv.hypoxia.8hr.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.3 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.2 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.3 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.4 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6 4575:::Extracted.Lung.Surfactant.30min.rep.2 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4575:::Purified.Surfactant.Lipids.30min.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.1 4583:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2 4583:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages.rep.1 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages.rep.2 4615:::AA_10uM_10.min_01 4615:::AA_10uM_10min_01 4615:::AA_30uM_1h_03 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_30min_09 4615:::Acetate.3mM.10m.05 4615:::CK_LA_2h.3 4615:::CK_OA_NA_0.05_2h 4615:::CK.LA.2h.4 4615:::CK.PA.NA.2h.3..101801 4615:::MTB1254_Bottom_42D_01 4615:::MTB1254_Bottom_42D_02 4615:::MTB1254_Bottom_42D_03 4615:::MTB1254_Pellicle_10D_01 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254.3219.3._01 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_01 4615:::MTB1254.Rv3524.2.compl._PA50.OA30_2h_02 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB1254vsMTB1254B4 4615:::OA_50uM_10min_03 4615:::OA_50uM_10min_04 4615:::OA_50uM_24h_01 4615:::OA_50uM_24h_02 4615:::OA_50uM_24h_05 4615:::OA_50uM.0.5.BSA_1h_01 4615:::PA_10uM_10.min_01 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_3d_01 4615:::PA_50uM_3d_02 4615:::PA_50uM_3d_04 4615:::PA_50uM.AA_30uM_2h_02 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_24h_02 4615:::PA_50uM.OA_30uM_24h_02 4615:::PA_50uM.OA_30uM_30min_02 4615:::PA_50uM.OA_30uM_30min_04 4615:::Rv.MT106_100503_02 4615:::Starvation_1254_24h_08 4615:::Starvation_1254_OA50_3d_01 4615:::Starvation_1254_OA50_3d_04 4615:::TBD044 4615:::TBD625 4615:::TBE734 4615:::Test_361.1 4615:::Test_361.2 4615:::WM_1254_10d_02 4615:::WM_1254_20d_01 4615:::WM_1254.whiB4._10d_02 4615:::WM_1254.whiB4._10d_03 4615:::WM_1254.whiB4._20d_01 4615:::WT_WhiB4_OA_10min_01 4615:::WT_WhiB4_PA_10min_01 4615:::X2.BA_100uM_30min_01 4615:::X7H9_PA100um_4h_T0_01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.2 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.1 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.1 4731:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3 4731:::X10ug.ml.Ethambutol.vs.DMSO.12hrs.3 4731:::X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.5 4815:::H37Rv.reaeration.for.12hrs.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.6 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.4 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.5 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.1 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.4hrs RV0008C 0.45 0.1 1.3 -0.125 0.575 -0.525 -0.532167021238415 0 -0.1 -0.45 1.4 -0.15 0.2 -0.25 -0.05 2.45 0.45 -0.35 0.15 1 -1.1 1.1 -0.4 2.05 0.15 0.5 -0.95 -0.4 0.35 -0.8 0.35 0.752316616339279 0.9 0.35 -0.9 -0.35 -1.12415126579433 -0.140518908224291 0.0843113449345744 0.477764287962588 0.590179414542021 -0.112415126579433 0.0843113449345744 -0.0843113449345744 1.2084626107289 1.23656639237376 0.281037816448581 0.0562075632897162 -1.43329286388776 -0.702594541121453 -0.748071569601315 -1.43482579743203 -0.453748329102437 -0.453748329102437 -0.282059772144758 -0.748071569601315 -0.674490759476595 -1.16502949364139 -1.58198741768147 0.600909949351876 1.01786787339195 0.355640582269477 0.968813999975473 1.75367597463915 -0.640766221502765 -0.607041683528936 -0.876837987319574 -0.370969917712127 -0.202347227842979 -1.41643059490085 0.269796303790638 1.31525698097936 -0.370969917712127 -0.708215297450425 -0.843113449345744 -0.910562525293404 -0.168622689869149 -1.01173613921489 -1.04546067718872 -0.978011601241063 0.640766221502765 0.0337245379738298 -0.0674490759476595 -0.505868069607446 -0.843113449345744 -1.18035882908404 NA 0.674490759476595 0.741939835424255 0.134898151895319 0.607041683528936 1.55132874679617 -0.809388911371914 -0.876837987319574 1.75367597463915 0.854354962003687 -0.51710958226539 -0.292279329106525 -0.224830253158865 0.179864202527092 2.09092135437745 0.0674490759476595 0.134898151895319 -0.674490759476595 NA NA -1.30401546832142 1.21408336705787 2.24830253158865 1.39394756958496 -1.41643059490085 2.43854351503077 1.06362004379002 -0.155651713725368 -0.103767809150245 2.20506594444271 NA NA 0.775 1.63183248260467 1.02261502243226 0.761521825215511 0.456913095129307 0.543944160868222 0.674490759476595 0.152304365043102 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