Bicluster 552 (zzz

GENES 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Ra..Sauton.s.media.replicate.2 2867:::H37Ra..Youman.media.replicate.3 2885:::H37Ra..7H9.roll.replicate.2 2885:::Strain.1843..replicate.4 2885:::Strain.9802501..replicate.2 2885:::Strain.9802501..replicate.3 2885:::Strain.9802501..replicate.4 2885:::Strain.9802826..replicate.2 2885:::Strain.CDC1551..replicate.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.2 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.4 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.1 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.1 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.6 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.vs..MTB1254.rep4 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.2 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.4 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6 4101:::NRP.Day12..3 4101:::NRP.Day14..1 4107:::DIPED.10ug.mL.vs.DMSO.12h.2 4107:::pH4.8vspH6.8..4h.A 4107:::pH5.2vspH6.8..11h. 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::Rif.0.5ug.mL.vsDMSO.2.5hA 4107:::Rif.5ug.mL.vsDMSO.2.5h 4107:::Rif.5ug.mL.vsDMSO.2.5hA 4107:::X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053. 4107:::X.241..10ug.mL..DMSO..12h..2 4107:::X0.05mM.palmitatevs10mM.gluc 4107:::X0.12mg.mL.PZAvspH5.6..10.5h. 4107:::X0.15mg.mL.TricvsEtOH..6h 4107:::X0.15mg.mL.TricvsEtOH..6hA 4107:::X0.1ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2ug.mL..111891.DMSO..5.5h..1 4107:::X0.2ug.mL..111891.DMSO..5.5h..3 4107:::X0.2ug.mL.Mtmvsctrl..0.75h. 4107:::X0.32ug.mL.CervsEtOH..6h 4107:::X100ug.mLCephalexinvsEtOH.6h 4107:::X100ug.mLCephalexinvsEtOH.6hA 4107:::X10mM.Succinate.10mM.Gluc..2 4107:::X10ug.mL..59vsDMSO..6hA 4107:::X10ug.mL.ClotrimvsEtOH..6hA 4107:::X10ug.mL.PA.1vsDMSO..6h 4107:::X10ug.mL.PA.21vsDMSO..6h 4107:::X10ug.mL.TriclosanvsDMSO..6hC 4107:::X20ug.mL.Cephalexin.Ctrl..6h..2 4107:::X20ug.mL.Prcp.6778.DMSO..6h..1 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X4mM.H2O2.ctrl..2h...2 4363:::H37Rv.hypoxia.1.day.rep.4 4363:::H37Rv.hypoxia.4.day.rep.7 4363:::H37Rv.hypoxia.8hr.rep.1 4365:::H37Rv.diamide.1h.rep.6 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.5 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.5 4570:::MTB.strain.TB294.Ctrl.vs.SigA.overexpression.rep1 4575:::Extracted.Lung.Surfactant.30min.rep.4 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4575:::Whole.Lung.Surfactant.30min.rep.4 4575:::Whole.Lung.Surfactant.30min.rep.5 4581:::H37Rv.Ctrl.vs.10.ug.ml.garlic.extract.6hrs 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.2 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.3 4615:::AA_10uM_2h_T0_01 4615:::AA_30uM_10.min_07 4615:::AA_30uM_1h_01 4615:::AA_30uM_1h_06 4615:::AA_30uM_24.AA_30uM_1h_01 4615:::AA_30uM_24h_T0_01 4615:::AA_3uM_10.min_01 4615:::AA_60uM_2h_T0_01 4615:::Acetate.3mM.10m.02 4615:::Acetate.3mM.30m.02 4615:::Acetate.3mM.30m.04 4615:::Acetate.3mM.60m.02 4615:::CHP.AA.30m.1 4615:::CK_OA_NA_0.05_2h 4615:::CK.OA.Na.24h.1 4615:::ETYA_10uM_1h_02 4615:::ETYA_30uM_10min.04 4615:::ETYA_3uM.AA_1h_02 4615:::L2A_30uM_10min_01 4615:::L2A_30uM_10min_04 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_2h_02 4615:::L2A_30uM_30min_01 4615:::L2A_30uM_4h_04 4615:::L2A_30uM_4h_T0_02 4615:::MAPP_5uM_4h_01 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_02 4615:::MDG_1254.pMV261_02 4615:::MDG_1254.pMV261.3524_03 4615:::MDG_1254.pMV261.3524_04 4615:::MTB1254_Bottom_10D_04 4615:::MTB1254_Pellicle_10D_04 4615:::MTB1254_Pellicle_21D_01 4615:::MTB1254_Pellicle_21D_02 4615:::MTB1254_Pellicle_21D_04 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.0485.1._PA_10m_01 4615:::MTB1254.0485.1._PA_10m_02 4615:::MTB1254.0485.1._PA_10m_03 4615:::MTB1254.0485.1._PA_10m_04 4615:::MTB1254.0485.14._01 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.3524.1._OA_10min_01 4615:::MTB1254.B4.1._OA_10MIN_02 4615:::MTB1254.B4.1._OA_30MIN_01 4615:::MTB1254.B4.1._OA_30MIN_02 4615:::MTB1254.B4.1._PA_30MIN_02 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._OA_30MIN_04 4615:::MTB1254TA1_OA.30min_02 4615:::MTB6548_PA50_1h_01 4615:::MTB6548_PA50_1h_02 4615:::OA_50uM_10min_02 4615:::OA_50uM_10min_05 4615:::OA_50uM_10min_08 4615:::OA_50uM_1h_01 4615:::OA_50uM_1h_03 4615:::OA_50uM_1h_04 4615:::OA_50uM_24h_02 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h_05 4615:::OA_50uM_2h_07 4615:::OA_50uM_2h_10 4615:::OA_50uM_2h..0.5.BSA.10mMGlu._30min_01 4615:::OA_50uM_2h..1.0..BSA.10mMGlu._30.min._01 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::OA_50uM_30min_01 4615:::OA_50uM_30min_03 4615:::OA_50uM_4h_01 4615:::OA_50uM_4h_08 4615:::OA_50uM.0.5.BSA_1h_01 4615:::PA_100uM_2h_T0_05 4615:::PA_50uM_10.min_02 4615:::PA_50uM_10min_01 4615:::PA_50uM_12h_03 4615:::PA_50uM_12h_05 4615:::PA_50uM_12h_06 4615:::PA_50uM_1h_02 4615:::PA_50uM_1h_09 4615:::PA_50uM_1h_12 4615:::PA_50uM_24h_04 4615:::PA_50uM_24h_10 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_30.min_04 4615:::PA_50uM_30.min_06 4615:::PA_50uM_8h_03 4615:::PA_50uM_8h_05 4615:::PA_50uM.AA_30uM_2h_01 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_2h_03 4615:::PA_50uM.OA_10uM_4h_03 4615:::PA_50uM.OA_10uM_4h_04 4615:::PA_50uM.OA_30uM_24h_02 4615:::PA_50uM.OA_30uM_2h_03 4615:::PA_50uM.OA_30uM_4h_05 4615:::Rv_OA_10min 4615:::Rv.MT71_100503_02 4615:::Rv.MT90_100603_01 4615:::Rv.MT96_100503_01 4615:::Rv.pMV0481.1. 4615:::Rv3524.1_OA_10min 4615:::Starvation_OA50_6h_04 4615:::Succinate_10mM_30min_01 4615:::TBD041 4615:::TBD042 4615:::TBD045 4615:::TBD662 4615:::TBD663 4615:::TBD816 4615:::TBE734 4615:::Test_361.2 4615:::Test.5 4615:::Tet_500ng_30M_01 4615:::WM_1254_10d_02 4615:::WT_85.1_OA_10min_02 4615:::X2.2..Dipyridyl_1mM_20min_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.H37Rv.rep.3 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.4 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.1 4815:::H37Rv.reaeration.for.6hrs.rep.4 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.3 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.4 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.2 Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages...IFNg.for.24hrs Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.48hrs RV2319C NA NA NA NA NA NA NA NA NA NA -0.421556724672872 0.843113449345744 -0.323755564548766 -0.458653716444085 -0.0809388911371914 2.59004451639013 0.161877782274383 0.485633346823149 -0.674490759476595 NA NA NA 0.258315610012313 0.0574034688916252 -0.774946830036939 -0.487929485578813 NA -0.774946830036939 -1.40638498784482 -0.172210406674875 -1.26287631561575 -0.401824282241376 -1.43508672229063 0.487929485578814 NA 0.516631220024626 -0.0287017344458126 0.975858971157627 0.660139892253689 0.287017344458126 0.918455502266002 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.259959980214938 0.0632335087009308 0.597205359953235 -0.632335087009308 0.716646431943882 NA NA NA NA -0.0362629440578815 -0.659985581853443 -1.10964608817117 -0.471418272752459 -0.827427617730009 0.623511806725457 1.05572466700684 0.527862333503422 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.390631713982584 1.51529430896112 1.96803468176048 1.12723113227595 -0.34186517946074 0.674490759476595 -0.947498924026646 -1.33292221515613 -0.240889556955927 1.49351525312675 1.75046411387973 -0.851143101244275 -0.62631284808541 -0.979617531620769 -0.754787278461904 1.49351525312675 1.33292221515613 0.240889556955927 1.94317575944448 -4.1636833421536 -0.687461735620376 0.038912928431342 0.887001546708947 0.110875193338618 -0.753842613532665 0.45 -0.149886835439243 -0.4 NA -0.671195202019869 NA -1.1123789476909 NA 0.770846582258966 0.770846582258966 -0.578134936694225 -0.192711645564742 RV2322C NA NA NA -1.14663429111021 0.809388911371914 -0.337245379738298 -0.382211430370071 -0.157381177211206 0.0674490759476593 -2.04595530374567 1.82509264328961 1.34898151895319 0.660139892253689 -0.574034688916251 2.49705089678569 3.15719078903938 0.0287017344458126 -0.631438157807876 0.717543361145314 0.429221392394197 -0.507261645556778 NA 0.472143531633617 0.876837987319574 2.05719681640362 0.775664373398084 -0.134898151895319 -1.18035882908404 -0.539592607581276 -1.41643059490085 -0.876837987319574 0.236071765816808 0 NA -0.337245379738298 0.505868069607446 0.775664373398084 2.09092135437744 0.843113449345744 0.573317145555106 -0.404694455685957 0 -1.25738400840699 -0.64118257382343 -0.108251603372787 0.108251603372787 0.208176160332283 -0.499622784797478 0.699471898716469 -0.299773670878487 0.0749434177196217 0.249811392398739 -0.124905696199369 0.0999245569594956 0.249811392398739 0.549585063277226 1.39894379743294 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