Bicluster 554 (zzz

GENES 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Rv..Dubos.media.replicate.2 2885:::Strain.CDC1551..replicate.2 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.1 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.1 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.3 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.4 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.rep.1 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.2 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.6 4082:::H37Rv.wild.type.Vs.Rv3676.null.7 4082:::Rv3676.null.Vs.H37Rv.wild.type.7 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.6 4100:::H37Rv.0.2..Oxygen..2h..5 4107:::DIPED.50ug.mL.vs.DMSO.12h.2 4107:::Mtm.0.2ug.mL.vs.ctrl.12h.1 4107:::pH5.2vspH6.8..2h. 4107:::pH5.6vspH6.8..11h. 4107:::pH5.6vspH6.8..2h. 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::X.241..10ug.mL..DMSO..12h..2 4107:::X0.02mM.GSNOvsDMSO..6h 4107:::X0.12mg.mL.BZAvspH5.6..5h. 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.PZAvspH5.6..6h. 4107:::X0.1mg.mLTriclosanvsEtOH.6hB 4107:::X0.1mg.mLTriclosanvsEtOH.6hC 4107:::X0.1mM.GSNO.DMSO..3.5h 4107:::X0.1mM.GSNOvsDMSO..4h 4107:::X0.1mM.GSNOvsDMSO..6h.A 4107:::X0.1ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2mg.mL.AmpvsEtOH..6h 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2mg.mL.TLMvsEtOH..6h 4107:::X0.2mM.NaN3.DMSO 4107:::X0.2ug.mL.INH.EtOH..6h 4107:::X0.2ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2ug.mL.Mtmvsctrl..1.5h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.32ug.mL.CervsEtOH..6h 4107:::X0.4mM.NaN3vsDMSO..4h.A 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X1.2mg.mL.PZA.pH5.6..2h.. 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X100ug.mL.Cephalexin.Ctrl..6h 4107:::X100ug.mL.Cphx.DMSO..6h 4107:::X100ug.mLCephalexinvsEtOH.6h 4107:::X10mM.Succinate.10mM.Gluc..2 4107:::X10ug.mL..241vsDMSO..6h 4107:::X10ug.mL.clofazimine.DMSO..6h 4107:::X10ug.mL.clotrimvsEtOH..6h 4107:::X10ug.mL.EconazolevsEtOH..6hA 4107:::X10ug.mL.methoxatinvsDMSO..6h.A 4107:::X10ug.mLchlorpromazinevsctrl.6h 4107:::X10ug.mLchlorpromazinevsctrl.6hA 4107:::X10uM.ValinomycinvsDMSO..6h 4107:::X12ug.mLEthionamidevsEtOH.6h 4107:::X12ug.mLEthionamidevsEtOH.6hA 4107:::X130ug.mL.TLMvsDMSO..6h 4107:::X130ug.mL.TLMvsDMSO..6hA 4107:::X13ug.mL.clfzine.DMSO..6h..1 4107:::X150uM.Deferroxaminevsctrl..6hB 4107:::X1mM.DNP.DMSO..6h..2 4107:::X1mM.DTNBvsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h.A 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X20ug.mL.Cephalexin.Ctrl..6h..2 4107:::X20ug.mL.methoxatinvsDMSO..6h 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X2mM.DTNBvsDMSO 4107:::X2mM.DTTvsDMSO..6h 4107:::X2mMb.mercaptoethanolvsDMSO.6h 4107:::X2ug.mL..111891vsDMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hB 4107:::X30ug.mLProcept6776vsDMSO.6h 4107:::X30ug.mLProcept6776vsDMSO.6hA 4107:::X40ug.mL.EtavsEtOH..6h 4107:::X4mM.H2O2.ctrl..2h...1 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X50ug.mL.PA.21vsDMSO..6hA 4107:::X50ug.mL.Triclosan.DMSO..6h 4107:::X50ug.mL.TriclosanvsEtOH..6hA 4107:::X60J.UVvsctrl..6h. 4107:::X80ug.mL.5CL.pH5.6..2h. 4363:::H37Rv.hypoxia.1.day.rep.10 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4.day.rep.2 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4hr.rep.2 4363:::H37Rv.hypoxia.7.day.rep.4 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.3 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.5 4570:::MTB.strain.TB294.SigA.overexpression.va.Ctrl.DS..rep1 4575:::Purified.Human.SP.A.Coated.2hrs.rep2 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.2 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4615:::AA_10uM_2h_T0_01 4615:::AA_30uM_10.min_05 4615:::AA_30uM_24h_02 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_4h_09 4615:::AA_60uM_24h_01 4615:::AA_60uM_24h_03 4615:::Acetate.3mM.10m.01 4615:::Acetate.3mM.10m.02 4615:::Acetate.3mM.30m.05 4615:::CHP.AA.30m.1 4615:::CHP25uM_24h.50uMOA_30min_01 4615:::Glucose_20mM_1h.OA_50uM_10min 4615:::Glycerol_1._30M_01 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_4h_07 4615:::MTB1254_Pellicle_42D_03 4615:::MTB1254_SDS_90MIN_01 4615:::MTB1254_SDS_90MIN_03 4615:::MTB1254_SDS_90MIN_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.Rv0465c.4._PA50.OA30_30m_01 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::OA_50uM_10min_07 4615:::OA_50uM_10min_08 4615:::OA_50uM_2h_04 4615:::OA_50uM_30min_01 4615:::OA_50uM_30min_09 4615:::PA_100uM_2h_T0_01 4615:::PA_50uM_12h_03 4615:::PA_50uM_12h_04 4615:::PA_50uM_1h_05 4615:::PA_50uM_1h_10 4615:::PA_50uM_24h_08 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_08 4615:::PA_50uM_3d_05 4615:::PA_50uM_4h 4615:::PA_50uM.OA_10uM_24h_02 4615:::PA_50uM.OA_30uM_24h_02 4615:::PA_50uM.OA_30uM_2h_04 4615:::PA_5uM_10.min_01 4615:::Rv_Rv3524.1_OA_10min 4615:::Rv.MT71_100603_01 4615:::Rv.MT71_100703_01 4615:::Rv.MT90_100703_01 4615:::Rv.MT90_100903_01 4615:::Rv.MT96_100503_01 4615:::Starvation_1254_12h_01 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_1254_OA50_6h_01 4615:::Starvation_1254_OA50_6h_03 4615:::Starvation_1254_OA50_6h_04 4615:::Starvation_1254_PA50.OA30_24h_02 4615:::TBD1111 4615:::Test_361.2 4615:::Test.4 4615:::Tet_500ng_30M_01 4615:::Tet_50ng_30M_01 4615:::Tet_5ug_30M_01 4615:::X7H9MTB1254_SDS_90MIN_01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.1 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.H37Rv.rep.3 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs 4731:::X5ug.ml.Rifampicin.vs.DMSO.2.5hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.3 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.3 4815:::H37Rv.reaeration.for.1hrs.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.6 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.7 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.1 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.1 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.3 Raghavan_Nature2008:::Complemented.espR.mutant..R...rep3 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Raghavan_Nature2008:::espR.mutant..R...rep2 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep2 Raghavan_Nature2008:::espR.mutant.complemented.with.WT.espR..R...rep2 Raghavan_Nature2008:::WT.rep2 Raghavan_Nature2008:::WT.TB.rep3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.2.hr.after.macrophage.infection Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection RV0184 0.809388911371914 0.573317145555106 0.28728310125855 1.37830720414782 1.05572466700684 0.146628425973173 -1.59425088603559 -1.25700550629729 -1.99281360754449 -1.83952025311799 -0.705149430361895 0.674490759476595 -0.459880063279497 1.16502949364139 -0.0306586708852998 0.275928037967698 -0.674490759476595 -0.723544632893075 1.00512348471022 -1.00512348471022 -1 0.3 0.65 0.95 0.8 1.4 0.6 0.25 1.38865744598123 -0.252082405056909 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.814324209611987 0.674490759476595 -0.575784794675142 -0.806098712545199 -0.0822549706678775 -0.115156958935028 -0.674490759476595 -1.28866120713008 -0.910288342057844 0.285150564981975 0.339987212093894 -0.5 0 0.9 -2.65580736543909 -0.716646431943882 -1.05389181168218 -0.843113449345744 0.885269121813031 0.548023742074734 -0.63481483244856 3.17192951753858 0.0729179199434157 -1.08400300630167 -1.3248925632576 0.797125443017794 -1.14050255693315 -1.14663429111021 0.978011601241063 -0.0674490759476596 -0.472143531633617 0.809388911371914 -0.505868069607446 0.708215297450425 0.269796303790638 1.04546067718872 -0.236071765816808 -0.674490759476595 0.640766221502766 1.88857412653447 1.28153244300553 -1.11290975313638 0.404694455685957 -4.38418993659787 -1.68622689869149 -1.61877782274383 -1.21408336705787 -0.337245379738298 -0.438418993659787 0.505868069607446 -0.741939835424255 0.674490759476595 0.876837987319574 -1.41643059490085 -0.741939835424255 -0.505868069607446 -0.809388911371914 0.202347227842979 1.9222986645083 -2.12464589235128 NA 0.438418993659787 0 -1.58505328477 1.34898151895319 0.539592607581276 -1.34898151895319 0.303520841764468 0.843113449345744 -1.01173613921489 -0.101173613921489 0.910562525293404 0.674490759476595 0.674490759476595 0.404694455685957 2.25954404424659 0.236071765816808 -3.5073519492783 -2.76541211385404 -2.29326858222042 -1.31525698097936 -2.09092135437745 -0.404694455685957 0.910562525293404 0.607041683528936 0.134898151895319 0.876837987319574 1.31525698097936 1.04546067718872 0 0.811443197949 0 2.18217598654193 -0.15870370811214 -0.87287039461677 0.753842613532665 1.38865744598123 -0.674490759476595 -0.982829392380182 0.461493677536618 0.922987355073235 -1.34898151895319 0.438418993659787 -3.03520841764468 0.3 1.45 0.8 -2.05 0.323755564548766 3.50735194927829 -0.890327802509106 0.863348172130042 0.944287063267233 -2.40118710373668 -1.24106299743694 -0.291257373410348 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.044 -0.8205 RV0379 0.662657588257707 1.96430642233535 -0.365349161383156 0.702594541121453 0.618283196186879 0.955528575925177 -1.42833337300926 -1.66638893517747 -1.62671300814944 -1.50768522706533 -1.15060188381302 -0.357083343252315 -0.119027781084105 0.7935185405607 0.674490759476595 1.5870370811214 -0.166884311623075 -1.7383782460737 0.456913095129306 -0.456913095129306 -0.089932101263546 0.696973784792482 1.03421916453078 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