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[+] Show/hide bicluster #566 rows and columns.
bicluster 566
Mycobacterium tuberculosis H37Rv
10x242
[+] Show/hide bicluster #566 rows (genes).
bicluster 566 genes
Mycobacterium tuberculosis H37Rv
10
[+] Show/hide bicluster #566 rows (short gene names).
bicluster 566 short names
Mycobacterium tuberculosis H37Rv
10
short_name
[+] Show/hide bicluster #566 rows (long gene names).
bicluster 566 long names
Mycobacterium tuberculosis H37Rv
10
long_name
[+] Show/hide bicluster #566 rows (NCBI RefSeq gene IDs).
bicluster 566 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
14
[+] Show/hide bicluster #566 gene upstream sequences.
bicluster 566 upstream sequences
Mycobacterium tuberculosis H37Rv
10
upstream
[+] Show/hide bicluster #566 columns (arrays; conditions).
bicluster 566 arrays
Mycobacterium tuberculosis H37Rv
242
[+] Show/hide bicluster #566 ratios.
bicluster 566 ratios
Mycobacterium tuberculosis H37Rv
10x242
GENES 2867:::H37Ra..7H9.shake.replicate.1 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Ra..Dubos.media.replicate.4 2867:::H37Ra..Youman.media.replicate.1 2867:::H37Rv..7H9.shake.replicate.1 2867:::H37Rv..Sauton.s.media.replicate.2 2867:::H37Rv..Youman.media.replicate.3 2885:::Strain.1843...replicate.2 2885:::Strain.1843...replicate.3 2885:::Strain.1843..replicate.1 2885:::Strain.1843..replicate.4 2885:::Strain.3160...replicate.3 2885:::Strain.9800608...replicate.3 2885:::Strain.9800608..replicate.1 2885:::Strain.9800608..replicate.2 2885:::Strain.9802501..replicate.4 2885:::Strain.9802826..replicate.3 2885:::Strain.9802826..replicate.4 2885:::Strain.CDC1551..replicate.1 2885:::Strain.M3061a..replicate.4 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.4 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.2 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.2 4082:::H37Rv.wild.type.Vs.Rv3676.null.5 4082:::Rv3676.null.Vs.H37Rv.wild.type.2 4082:::Rv3676.null.Vs.H37Rv.wild.type.5 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.6 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.6 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.vs..MTB1254.rep1 4100:::H37Rv.0.2..Oxygen..2h..4 4101:::H37Rv.Day14.1 4101:::H37Rv.Day24.2 4101:::H37Rv.Day6.3 4101:::H37Rv.Day60.1 4101:::H37Rv.Day60.2 4101:::H37Rv.Day60.3 4101:::H37Rv.Day8.1 4101:::H37Rv.Day8.3 4101:::NRP.Day10..1 4101:::NRP.Day10..2 4101:::NRP.Day10..3 4101:::NRP.Day12..3 4101:::NRP.Day14..3 4101:::NRP.Day14..8 4101:::NRP.Day6..3 4101:::NRP.Day8..1 4101:::NRP.Day8..3 4107:::pH4.8vspH6.8..2h.B 4107:::pH5.2vspH6.8..5h. 4107:::pH5.6vspH6.8..4h.B 4107:::WT.t.6h.WT.t.0h..1 4107:::WT.t.6h.WT.t.0h..2 4107:::X0.05mM.Palmitate.10mM.Gluc..2 4107:::X0.1mM.GSNO.DMSO..3.5h 4107:::X0.4mM.NaN3.DMSO 4107:::X100ug.mL.TriclosanvsEtOH..6h 4107:::X100ug.mL.TriclosanvsEtOH..6hA 4107:::X10ug.mL..109vsDMSO..6hA 4107:::X10ug.mL.PA.1vsDMSO..6hB 4107:::X10ug.mL.PA.21vsDMSO..6h 4107:::X1ug.mL..241vsDMSO..6h 4107:::X1ug.mL..59vsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X20ug.mL.CPZvsDMSO..6h.A 4107:::X24ug.mL.cltrmazole.DMS..6h..3 4107:::X24ug.mL.Econazole.DMSO..6h..1 4107:::X24ug.mL.Econazole.DMSO..6h..2 4107:::X25ug.mL.CPZvsDMSO..6h.A 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..3 4107:::X2ug.mL..111891vsDMSO..6h 4107:::X2ug.mL..121940vsDMSO..6hA 4107:::X50ug.mL.TriclosanvsEtOH..6h 4107:::X50ug.mL.TriclosanvsEtOH..6hA 4107:::X50ug.mLAntimycinAvsDMSO..6h 4107:::X50ug.mLAntimycinAvsDMSO..6hA 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..1 4107:::X5ug.mLCFZ.0.1mMGSNOvsDMSO.A 4107:::X7d.Dubos.NRP.1vsDubos.log.phase 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4hr.rep.7 4363:::H37Rv.hypoxia.7.day.rep.2 4363:::H37Rv.hypoxia.8hr.rep.3 4365:::H37Rv.diamide.1h.rep.3 4365:::H37Rv.diamide.1h.rep.4 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.3 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.5 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.6 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.4 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.6 4575:::Whole.Lung.Surfactant.2hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.1 4615:::AA_30uM_2h_07 4615:::AA_3uM_2h_T0_01 4615:::AA_60uM_2h_T0_01 4615:::AA_60uM_2h_T0_03 4615:::Acetate.3mM.2h.04 4615:::Acetate.3mM.2h.06 4615:::Acetate.3mM.60m.01 4615:::CK_OA_NA_0.05_2h 4615:::CK.for.MDG.24h.PA.NA 4615:::CK.for.MDG.4h.PA.NA 4615:::ETYA_10uM.AA_1h_02 4615:::L2A_30uM_10min_03 4615:::L2A_30uM_2h_05 4615:::MTB1254_Bottom_10D_03 4615:::MTB1254_Bottom_14D_02 4615:::MTB1254_Pellicle_42D_03 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_01 4615:::OA_50uM_1h_03 4615:::OA_50uM_2h_03 4615:::OA_50uM_2h_06 4615:::OA_50uM_2h_07 4615:::OA_50uM_4h_05 4615:::OA_50uM_4h_07 4615:::PA_50uM_12h_01 4615:::PA_50uM.OA_10uM_12h_02 4615:::PA_50uM.OA_10uM_4h_03 4615:::Rv_OA_10min 4615:::Rv.pMV0481.1. 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_24h_01 4615:::Starvation_1254_24h_02 4615:::Starvation_1254_24h_03 4615:::Starvation_1254_24h_06 4615:::Starvation_1254_24h_08 4615:::Starvation_1254_3d_01 4615:::Starvation_1254_3d_03 4615:::Starvation_1254_3d_04 4615:::Starvation_1254_6h_01 4615:::Starvation_1254_6h_05 4615:::Starvation_1254_6h_07 4615:::Starvation_1254_6h_08 4615:::Starvation_1254_OA50_3d_03 4615:::Starvation_1254_OA50_3d_04 4615:::Starvation_OA50_24h_02 4615:::Starvation_OA50_6h_01 4615:::TBD044 4615:::TBD1275 4615:::WM_1254.whiB4._14d_01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4731:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3 4731:::X10ug.ml.Ethambutol.vs.DMSO.12hrs.3 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.24.hr.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.3 4815:::H37Rv.reaeration.for.6hrs.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.rep.2 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep1 Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages.for.24hrs
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[+] Show/hide bicluster #566 motif PSSM #1. bicluster 566 motif PSSM #1 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 1 0 0 0
2 0.777778 0.222222 0 0
3 0.222222 0.555556 0 0.222222
4 0 0 0.777778 0.222222
5 0.444444 0 0.555556 0
6 0 0.888889 0 0.111111
7 0.111111 0 0 0.888889
8 0 0 0 1 [+] Show/hide bicluster #566 motif PSSM #2. bicluster 566 motif PSSM #2 Mycobacterium tuberculosis H37Rv 10x4
POSITION A C G T
1 1 0 0 0
2 0 0 0 1
3 0 0 0 1
4 0 0 1 0
5 0.666667 0 0 0.333333
6 0 0 0 1
7 0 0.666667 0.333333 0
8 0 1 0 0
9 0 1 0 0
10 0 0 0 1 |