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[+] Show/hide bicluster #585 rows and columns.
bicluster 585
Mycobacterium tuberculosis H37Rv
17x237
[+] Show/hide bicluster #585 rows (genes).
bicluster 585 genes
Mycobacterium tuberculosis H37Rv
17
[+] Show/hide bicluster #585 rows (short gene names).
bicluster 585 short names
Mycobacterium tuberculosis H37Rv
17
short_name
[+] Show/hide bicluster #585 rows (long gene names).
bicluster 585 long names
Mycobacterium tuberculosis H37Rv
17
long_name
[+] Show/hide bicluster #585 rows (NCBI RefSeq gene IDs).
bicluster 585 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
34
[+] Show/hide bicluster #585 gene upstream sequences.
bicluster 585 upstream sequences
Mycobacterium tuberculosis H37Rv
17
upstream
[+] Show/hide bicluster #585 columns (arrays; conditions).
bicluster 585 arrays
Mycobacterium tuberculosis H37Rv
237
[+] Show/hide bicluster #585 ratios.
bicluster 585 ratios
Mycobacterium tuberculosis H37Rv
17x237
GENES 2867:::H37Rv..Sauton.s.media.replicate.2 2885:::H37Ra..7H9.roll.replicate.3 2885:::Strain.1843..replicate.1 2885:::Strain.3160..replicate.4 2885:::Strain.9802826..replicate.2 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.5 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.3 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.4 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.6 4068:::H37Rv.SDS.treated.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.5 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.3 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.4 4068:::H37Rv.vs..H37Rv.SDS.treated.rep.6 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.vs..MTB1254.rep5 4089:::MTB1254.vs..MTB1254.rep6 4101:::NRP.Day10..1 4101:::NRP.Day14..5 4107:::pH5.6vspH6.8..2h. 4107:::X0.05mM.palmitatevs10mM.gluc 4107:::X0.12mg.mL.BZAvspH5.6..7h. 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4107:::X0.2ug.mL.Mtmvsctrl..1.5h. 4107:::X0.5ug.mL..111895vsDMSO.6h 4107:::X0.5uMValinomycin.70mMKClvsDMSO.6h 4107:::X0.5uMValinomycinvsDMSO.6h 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X100uM.DCCD.DMSO..6h 4107:::X10mM.succinatevs10mM.glucose 4107:::X10ug.mL.capreomycinvsEtOH..6h 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.ChlorprovsEtOH 4107:::X10ug.mL.EconazolevsEtOH..6h 4107:::X10ug.mL.RoxvsEtOH..6hA 4107:::X10ug.mL.TetvsEtOH..6h 4107:::X10ug.mLchlorpromazinevsctrl.6h 4107:::X10uM.CCCP.DMSO..6h 4107:::X10uM.ValinomycinvsDMSO..6h 4107:::X1ug.mL..111891.DMSO..12h..2 4107:::X1uM.ValinomycinvsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X2ug.mL..121940vsDMSO..6hA 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X30ug.mL.RoxvsEtOH..6hA 4107:::X4mM.H2O2vsctrl..1h. 4107:::X50ug.mL.RoxvsEtOH..6h 4107:::X5ug.mL.AmivsEtOH..6h 4107:::X5ug.mL.CapvsEtOH..6hA 4107:::X9ug.mLAscidideminNpvsDMSO.6h 4107:::X9ug.mLNaturalproductvsDMSO.6h 4363:::H37Rv.hypoxia.4hr.rep.5 4364:::H37dosR.mutant.hypoxia.12hr.rep.1 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.1 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.4 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.6 4570:::MTB.strain.TB294.SigA.overexpression.vs.Ctrl..DS..rep2 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.3 4615:::AA_30uM_10.min_06 4615:::AA_30uM_10min_02 4615:::AA_30uM_24h_03 4615:::AA_30uM_2h_08 4615:::AA_30uM_4h_03 4615:::AA_3uM_10.min_01 4615:::AA_60uM_24h_01 4615:::aceatate.induction.3 4615:::Acetate.3mM.2h.03 4615:::Acetate.3mM.60m.01 4615:::Acetate.3mM.60m.03 4615:::CK_AA_NA.2h 4615:::CK_LA_2h 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.AA.Na.2h 4615:::CK.for.AA.NA.2h.2 4615:::CK.for.AA.Na.4h.2 4615:::CK.for.MDG.OA.Na.24h 4615:::CK.for.OA.4h.1 4615:::CK.PA.Na.2h.01 4615:::ETYA_30uM_1h_01 4615:::L2A_30uM_1h_01 4615:::L2A_30uM_2h_05 4615:::L2A_30uM_4h_06 4615:::MDA_1254.pMV261_02 4615:::MDGCy3.7H9Cy5.01 4615:::MTB1254_FA5_10min_01 4615:::MTB1254_FA5_10min_04 4615:::MTB1254_SDS_90MIN_02 4615:::MTB1254.0485.1._PA_12h_02 4615:::MTB1254.0485.1._PA_4h_01 4615:::MTB1254.0485.1._PA_4h_02 4615:::MTB1254.0485.1._PA_4h_03 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.3219.2._01 4615:::MTB1254.3219.3._01 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_30MIN_04 4615:::MTB1254.B4.1._PA_4h_01 4615:::MTB1254.B4.1._PA_4h_03 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._OA_30MIN_04 4615:::MTB1254.B4.1.Compl._PA_30MIN_02 4615:::MTB1254.B4.1.Compl._PA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_4h_03 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB1254TA1_OA.30min_01 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB1254whiB4_SDS_90MIN_03 4615:::MTB1254whiB4_SDS_90MIN_04 4615:::MTB1370_PA50_1h_01 4615:::MTB1370_PA50_1h_03 4615:::MTB6548_PA50_1h_01 4615:::MTB6548_PA50_1h_02 4615:::MTB889_PA50_1h_02 4615:::OA_50uM_2h..0.5.BSA.10mMGlu._30min_01 4615:::OA_50uM_30min_03 4615:::OA_50uM_4h_03 4615:::OA_50uM_4h_07 4615:::PA_300uM_2h_T0_01 4615:::PA_50uM_10min_05 4615:::PA_50uM_1h_08 4615:::PA_50uM_1h_09 4615:::PA_50uM_1h_11 4615:::PA_50uM_1h_12 4615:::PA_50uM_2h_04 4615:::PA_50uM_2h_06 4615:::PA_50uM_2h_07 4615:::PA_50uM_3d_02 4615:::PA_50uM_3d_04 4615:::PA_50uM_3d_06 4615:::PA_50uM_4h_02 4615:::PA_50uM_4h_04 4615:::PA_50uM_8h_01 4615:::PA_50uM_8h_05 4615:::PA_50uM_8h_06 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_50uM.OA_10uM_12h_01 4615:::PA_50uM.OA_10uM_30min_03 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_30uM_24h_01 4615:::PA_50uM.OA_30uM_2h_01 4615:::PA_50uM.OA_30uM_30min_03 4615:::PA_50uM.OA_30uM_30min_04 4615:::Rv_Rv3524.1 4615:::Rv_TA_OA30_30mim_01 4615:::Rv_TA_OA30_30mim_03 4615:::Rv.3524.2._01 4615:::Rv.MT106_100603_01 4615:::Rv.MT71_100603_01 4615:::Rv.MT90_100503_02 4615:::Rv.MT96_100503_01 4615:::Rv.pMV0481.1. 4615:::Rv.pMV0481.2. 4615:::Rv.pMV261Km._300uM.PA_10m 4615:::SDS_3h_01 4615:::Starvation_1254_12h_03 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_1254_OA50_6h_04 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50_6h_02 4615:::Starvation_1254_PA50_6h_03 4615:::Starvation_1254_PA50_6h_04 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::Starvation_OA50_6h_01 4615:::TBD044 4615:::TBD1115 4615:::TBD664 4615:::TBE057 4615:::TBE283 4615:::TBE736 4615:::Tet_100uM_30M_01 4615:::WM_T0_01 4615:::X7H9Cy3.MDGCy5.01 4615:::X7H9Cy3.MDGCy5.03 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.H37Rv.rep.2 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.4 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.1 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.7 Raghavan_Nature2008:::espR.mutant..R...rep2
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RV3853 0.674490759476595 1.51249443034146 0.735808101247195 -0.408782278470664 0.122634683541199 0.494181348527406 0.567640738173372 0.179864202527092 0.989253113899006 1.12415126579433 0.382211430370071 1.59629479742794 -0.269796303790638 -0.634222654433216 -0.654356706954906 0.372479971651254 0.312077814086186 -2.62749385408047 -1.036903704867 -0.654356706954906 0.573317145555106 -0.640766221502765 0.472143531633617 -1.01173613921489 -0.236071765816808 -2.39444219614191 -2.59678942398489 -2.56306488601106 -1.68622689869149 0.370969917712127 -1.51760420882234 -1.11290975313638 -0.236071765816808 1.14663429111021 -0.134898151895319 0.640766221502765 -0.134898151895319 -3.03520841764468 -1.78740051261298 0.0337245379738298 -0.236071765816808 0.101173613921489 -1.75367597463915 0 -0.0337245379738298 1.38985974680026 0.224830253158865 0.549585063277226 1.6237740505918 0.674490759476595 -1.89856658223042 0.349735949358234 0.249811392398739 -3.04769898726462 -1.49886835439243 -0.724453037956343 0.274792531638613 1.89856658223042 -0.474641645557604 0.0499622784797478 -0.89932101263546 -0.299773670878487 -2.04845341766966 0.5745662025171 -0.649509620236721 0.549585063277226 -2.64800075942663 0.749434177196217 -2.39818936702789 -2.52309506322726 0.199849113918991 -3.57230291130197 -1.19909468351395 -0.44966050631773 -1.1491324050342 -1.94852886071016 -0.699471898716469 0.524603924037352 0.774415316436091 -1.39894379743294 -0.999245569594956 0.637019050616784 -0.216346092662304 0.224830253158865 2.0609439872896 NA 0 0.505868069607447 1.34898151895319 -0.05 1.3 1.25 NA -1.04385474680902 -0.819024493650151 1.75700679320446 -0.824377594915839 0.179864202527092 -0.427177481001844 0.472143531633617 -0.134898151895319 0.696973784792482 0.562075632897163 0.876837987319574 0.359728405054184 0.741939835424254 -0.382211430370071 -0.247313278474752 0.44966050631773 1.59629479742794 1.97850622779801 0.494626556949503 0.876837987319574 1.25904941768964 1.68622689869149 0.427177481001844 0.652007734160709 0.38221143037007 -1.03421916453078 0.0224830253158865 0.629524708844822 0.584558658213049 0.247313278474751 1.12415126579433 0 1.03421916453078 -2.3382346328522 -1.68622689869149 -1.03421916453078 -1.5063626961644 NA 0.314762354422411 0.584558658213049 -1.68622689869149 0.0224830253158865 0.44966050631773 0.494626556949503 0.112415126579432 -0.292279329106525 0.831871936687801 0.539592607581276 0.0224830253158865 -0.314762354422411 -2.56306488601106 -1.10166824047844 -0.292279329106525 -0.134898151895319 -0.359728405054184 0.562075632897163 1.25904941768964 0.989253113899006 -2.13588740500922 -1.70870992400737 -1.68622689869149 -2.3382346328522 -2.45064975943163 0.831871936687801 -0.786905886056028 -0.989253113899006 -0.202347227842979 -1.68622689869149 0.179864202527092 -0.809388911371914 -1.14663429111021 -0.0674490759476595 -0.674490759476595 -0.427177481001844 NA NA 0.809388911371914 -0.0674490759476595 0.359728405054184 -2.31575160753631 -2.51809883537929 -1.03421916453078 -0.494626556949503 -0.404694455685957 -0.404694455685957 0.674490759476595 -0.854354962003687 -1.12415126579433 0.652007734160709 -1.5063626961644 -0.539592607581276 -0.584558658213049 0.584558658213049 -1.41643059490085 -1.88857412653447 1.19160034174198 1.12415126579433 0.809388911371914 1.23656639237376 0.629524708844822 0.494626556949503 0.0224830253158865 -0.089932101263546 0.51710958226539 -3.23755564548766 -0.696973784792482 -1.19160034174198 -1.21408336705787 -2.72044606322227 -0.0674490759476595 0.472143531633617 -1.14663429111021 1.55132874679617 1.30401546832142 -0.921804037951347 1.12415126579433 -0.337245379738298 0.44966050631773 0.764422860740141 0.404694455685957 0.134898151895319 2.27078555690454 2.1583704303251 0.505868069607446 0.500428627998764 1.10964608817117 1.24019268677955 -1.19667715391009 -0.15 0.15 -0.1 1.4 0.490538734164797 NA 0.131150981009338 0.693226613906501 -0.993000284784987 -1.15965077945099 1.48058947202179 -0.559333800541567 -0.625137777075869 -0.230313917870057 0.734811071299705 -0.7325
[+] Show/hide bicluster #585 motif PSSM #1. bicluster 585 motif PSSM #1 Mycobacterium tuberculosis H37Rv 19x4
POSITION A C G T
1 0 1 0 0
2 0.75 0.25 0 0
3 0.375 0 0.625 0
4 0 1 0 0
5 0.875 0.125 0 0
6 0 0 0.75 0.25
7 0 0.875 0 0.125
8 0.25 0.25 0.375 0.125
9 0 0.25 0.75 0
10 0 1 0 0
11 0.25 0 0.625 0.125
12 0.625 0.25 0.125 0
13 0 1 0 0
14 0.875 0 0.125 0
15 0 0.375 0.375 0.25
16 0.125 0.75 0 0.125
17 0.875 0 0.125 0
18 0 0.5 0.125 0.375
19 0 0 1 0 [+] Show/hide bicluster #585 motif PSSM #2. bicluster 585 motif PSSM #2 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0 1 0 0
2 0 0 1 0
3 0.181818 0.181818 0.636364 0
4 0 0.090909 0 0.909091
5 0 0 1 0
6 0.727273 0.090909 0.181818 0
7 0.454545 0.272727 0.090909 0.181818
8 0.272727 0.727273 0 0
9 0 0 1 0
10 0.090909 0.363636 0.454545 0.090909
11 0.090909 0 0.727273 0.181818
12 0 0.545455 0.090909 0.363636
13 0 0.181818 0.181818 0.636364
14 0 0.090909 0.454545 0.454545
15 0 0 0.818182 0.181818 |