Rv0133 Histone acetyltransferase HPA2 and related acetyltransferases

Summary

Product Feature Type Start End Strand Length AA Length is TF
Rv0133 Histone acetyltransferase HPA2 and related acetyltransferases CDS 160869 161474 + 606 201 FALSE

Rv0133 (Histone acetyltransferase HPA2 and related acetyltransferases) is predicted to be co-regulated in modules bicluster_0084 with residual 0.58 and bicluster_0113 with residual 0.50.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.64 and 170.00 for bicluster_0084 and 3.20 and 170.00 for bicluster_0113 respectively.

These modules are enriched for following go terms: nucleobase-containing compound kinase ac... exodeoxyribonuclease activity, exodeoxyribonuclease activity, producing..., exonuclease activity, active with either..., deoxyribonuclease activity.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Last update: 10/16/2017 - 17:54
BEI Mutant Available BEI Mutant ID BEI MT Number BEI Target ID Order from BEI
Yes NR-14780 MT0141 139
Product (LegacyBRC) Product (RefSeq)
PROBABLE ACETYLTRANSFERASE acetyltransferase
Operon # Operon
93
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Tyrosine metabolism

41
Total items in this category:  

KEGG

Benzoate degradation

48
Total items in this category:  

KEGG

Naphthalene degradation

40
Total items in this category:  

KEGG

Aminobenzoate degradation

73
Total items in this category:  

KEGG

Ethylbenzene degradation

11
Total items in this category:  

KEGG

Limonene and pinene degradation

65
Total items in this category:  

KEGG

Microbial metabolism in diverse environments

296
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15607275 NP_214647.1 Run
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found

Quantitative Proteomics Data

t-test p-value Cholesterol/Glycerol Ratio
0.970000 1.11

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: