Rv0534c 1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.74)

Summary

Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv0534c menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.74) CDS 625562 626440 - 879 292 FALSE

Rv0534c (1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.74)) is predicted to be co-regulated in modules bicluster_0305 with residual 0.55 and bicluster_0597 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.07 for bicluster_0305 and 0.00 and 0.28 for bicluster_0597 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Product (LegacyBRC) Product (RefSeq)
Probable 14-dihydroxy-2-naphthoate octaprenyltransferase 1,4-dihydroxy-2-naphthoate octaprenyltransferase
Operon # Operon
360
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Ubiquinone and other terpenoid-quinone biosynthesis

7
Total items in this category:  

KEGG

Metabolic pathways

601
Total items in this category:  

KEGG

Biosynthesis of secondary metabolites

326
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15607674 NP_215048.1 Run
No TFOE experiment results were found

Quantitative Proteomics Data

t-test p-value Cholesterol/Glycerol Ratio
NA NA

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: