Rv1011 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv1011 ispE 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148) CDS 1130191 1131111 + 921 306 FALSE

Rv1011 (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)) is predicted to be co-regulated in modules bicluster_0388 with residual 0.53 and bicluster_0493 with residual 0.66.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.05 for bicluster_0388 and 0.02 and 25.00 for bicluster_0493 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

BASS Score Primary TSS Re-Annotated Start Tuberculist Annotated Start
-0.159 1130155 1130155 1130191
Product (LegacyBRC) Product (RefSeq)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Operon # Operon
678 -
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Terpenoid backbone biosynthesis

27
Total items in this category:  

KEGG

Metabolic pathways

601
Total items in this category:  

KEGG

Biosynthesis of secondary metabolites

326
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15608151 NP_215527.1 Run
GO:0050515

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity

Details: 
Catalysis of the reaction: 4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + 2 H(+).
GO Category: 
molecular_function
1
Total items in this category:  
GO:0040007

growth

growth

Details: 
The increase in size or mass of an entire organism, a part of an organism or a cell.
GO Category: 
biological_process
621
Total items in this category:  
No TFOE experiment results were found
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
NA NA

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: