Rv1816 Transcriptional regulator, TetR family

Rv1816 (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0173 with residual 0.41 and bicluster_0443 with residual 0.45.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 11.00 and 12,000.00 for bicluster_0173 and 0.00 and 0.40 for bicluster_0443 respectively.

These modules are enriched for following go terms: cellular biosynthetic process, organic substance biosynthetic process, cytoplasm, RNA binding.

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 131 - 140 of 143
Gene Target Differential Expression Distance Expression pvalue Type
No 35 -0.38 0.569866 CDS
Dihydroflavonol-4-reductase (EC 1.1.1.219)
No -101 -0.19 0.638954 Antisense.TSS
Dihydroflavonol-4-reductase (EC 1.1.1.219)
No -120 -0.19 0.638954 Internal.TSS
Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase
No -52 -0.31 0.494168 CDS
Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase
No 57 -0.31 0.494168 Antisense.TSS
No -92 -0.27 0.573023 Primary.TSS
Oxidoreductase, FAD-binding protein
No -64 -0.13 0.92869 CDS
FIG008913: Membrane-associated phospholipid phosphatase
No -79 -0.06 0.936519 CDS
PE-PGRS FAMILY PROTEIN
No -148 -0.06 0.941972 CDS
POSSIBLE MEMBRANE PROTEIN
No 52 0.14 0.877338 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.07 U
D14I 4 14 15.63 13.41 I
D14U 4 14 15.63 12.52 U
D17I 3 17 19.15 13.71 I
D17U 3 17 19.15 12.66 U
D21I 4 21 23.23 13.23 I
D21U 4 21 23.23 12.39 U
D24I 3 24 26.60 13.29 I
D24U 3 24 26.60 12.22 U
D28I 4 28 30.61 12.79 I
D28U 4 28 30.61 12.00 U
D3I 3 3 3.83 12.26 I
D3U 3 3 3.83 11.96 U
D5I 9 5 6.00 12.69 I
D5U 17 5 6.00 12.43 U
D7I 18 7 8.14 12.30 I
D7U 19 7 8.14 11.73 U