Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Glutathione S-transferase family protein (NCBI)
Functional Annotations (5)
|Glutathione S-transferase||cog/ cog|
|glutathione transferase activity||go/ molecular_function|
|oxidoreductase activity||go/ molecular_function|
|transition metal ion binding||go/ molecular_function|
|Glutathione metabolism||kegg/ kegg pathway|
Regulation information for RSP_3377(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_3377
Module neighborhood information for RSP_3377
|Gene||Common Name||Description||Module membership|
|RSP_0113||RSP_0113||Phospholipase D/Transphosphatidylase (NCBI)||176, 362|
|RSP_0114||RSP_0114||hypothetical protein (NCBI)||176, 294|
|RSP_0351||RSP_0351||D-threo-aldose 1-dehydrogenase (NCBI)||158, 216|
|RSP_0408||RSP_0408||hypothetical protein (NCBI)||134, 216|
|RSP_0424||RSP_0424||hypothetical protein (NCBI)||216, 285|
|RSP_0429||RSP_0429||Probable ABC drug/toxin efflux transporter; fused ATPase and inner membrane subunits (NCBI)||176, 329|
|RSP_0511||RSP_0511||two component transcriptional regulator, LuxR family (NCBI)||168, 176|
|RSP_0559||msrA||Peptide methionine sulfoxide reductase (NCBI)||134, 216|
|RSP_0608||RSP_0608||hypothetical protein (NCBI)||146, 216|
|RSP_0716||RSP_0716||NADPH/quinone reductase and related Zn-dependent oxidoreductases (NCBI)||132, 216|
|RSP_0765||RSP_0765||SAM-dependent methyltransferase (NCBI)||10, 176|
|RSP_0941||RSP_0941||ABC transporter, ATPase subunit (NCBI)||92, 176|
|RSP_0942||RSP_0942||ABC transporter, inner membrane subunit (NCBI)||92, 176|
|RSP_1058||RSP_1058||hypothetical transmemebrane protein (NCBI)||134, 216|
|RSP_1076||sohB||Peptidase family S49 (NCBI)||216, 366|
|RSP_1077||RSP_1077||transcriptional regulator, LysR family (NCBI)||216, 249|
|RSP_1078||fdsG||NAD-dependent formate dehydrogenase, gamma subunit (24 kDa) (NCBI)||216, 239|
|RSP_1079||fdsB||NAD dependent formate dehydrogenase, beta subunit (51 kDa) (NCBI)||216, 239|
|RSP_1080||fdsA||NAD-dependent formate dehydrogenase, alpha subunit (NCBI)||216, 239|
|RSP_1081||fdsC||formate dehydrogenase chain C (NCBI)||216, 239|
|RSP_1082||fdsD||NAD-dependent formate dehydrogenase, delta subunit (NCBI)||216, 239|
|RSP_1204||RSP_1204||ABC multidrug efflux pump, fused ATPase and inner membrane subunits (NCBI)||216, 237|
|RSP_1220||hrcA||heat-inducible transcription repressor HrcA (NCBI)||10, 216|
|RSP_1408||clpB||Chaperone ClpB (NCBI)||132, 216|
|RSP_1524||RSP_1524||Nucleotidyltransferase family protein (NCBI)||110, 176|
|RSP_1566||RSP_1566||hypothetical protein (NCBI)||176, 381|
|RSP_1600||RSP_1600||possible transporter, DME family, DMT superfamily (NCBI)||176, 350|
|RSP_1743||RSP_1743||ATPase, AAA family (NCBI)||216, 237|
|RSP_1873||RSP_1873||hypothetical protein (NCBI)||35, 216|
|RSP_1922||RSP_1922||Transcriptional regulator, GntR family, with aminotransferase domain (NCBI)||1, 176|
|RSP_2003||yibQ||YibQ protein (NCBI)||176, 285|
|RSP_2026||RSP_2026||transcriptional regulator, AraC family (NCBI)||103, 176|
|RSP_2121||RSP_2121||hypothetical protein (NCBI)||216, 366|
|RSP_2160||gno||Short-chain dehydrogenase/reductase (NCBI)||20, 176|
|RSP_2196||RSP_2196||enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase (NCBI)||174, 216|
|RSP_2197||RSP_2197||Acetoacetyl-CoA thiolase (NCBI)||174, 216|
|RSP_2638||RSP_2638||putative sodium/calcium exchanger (NCBI)||134, 216|
|RSP_2640||RSP_2640||hypothetical protein (NCBI)||134, 216|
|RSP_2966||uvrA||ABC excinuclease subunit A (NCBI)||134, 216|
|RSP_3052||RSP_3052||transcriptional regulator, LysR family (NCBI)||97, 176|
|RSP_3053||RSP_3053||Possible dioxygenase/glyoxalase family protein (NCBI)||97, 176|
|RSP_3055||RSP_3055||transcriptional regulator, MarR family (NCBI)||176, 242|
|RSP_3085||RSP_3085||Conserved hypothetical membrane protein (NCBI)||157, 176|
|RSP_3086||RSP_3086||periplasmic sensor signal transduction histidine kinase (NCBI)||83, 176|
|RSP_3087||dgkA||diacylglycerol kinase (NCBI)||97, 176|
|RSP_3088||RSP_3088||two component transcriptional regulator, winged helix family (NCBI)||176, 213|
|RSP_3157||RSP_3157||ABC transporter, inner membrane subunit (NCBI)||19, 176|
|RSP_3202||RSP_3202||transcriptional regulator, AraC family (NCBI)||82, 176|
|RSP_3215||RSP_3215||hypothetical protein (NCBI)||176, 358|
|RSP_3245||RSP_3245||Possible transporter, Major facilitator superfamily (MFS) (NCBI)||176, 380|
|RSP_3284||iolD||Acetolactate synthase (NCBI)||176, 246|
|RSP_3377||RSP_3377||Glutathione S-transferase family protein (NCBI)||176, 216|
|RSP_3466||RSP_3466||hypothetical protein (NCBI)||147, 176|
|RSP_3467||RSP_3467||hypothetical protein (NCBI)||147, 176|
|RSP_3468||RSP_3468||hypothetical protein (NCBI)||147, 176|
|RSP_3469||RSP_3469||hypothetical protein (NCBI)||147, 176|
|RSP_3470||RSP_3470||hypothetical protein (NCBI)||147, 176|
|RSP_3602||RSP_3602||ABC efflux transporter, ATPase subunit (NCBI)||134, 216|
|RSP_3603||RSP_3603||Possible ABC efflux tranporter, fused inner membrane domains (NCBI)||134, 216|
|RSP_3629||RSP_3629||hypothetical protein (NCBI)||176, 302|
|RSP_3686||RSP_3686||transcriptional regulator, LacI family (NCBI)||171, 216|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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