Genes

Species: Synechococcus elongatus PCC 7942
transcription factors: 90

Name Common name Type Gene ID Chromosome Start End Strand Description TF
Synpcc7942_0090 CDS 3773430 chromosome 88735 89718 + "transcriptional regulator, GntR family (IMGterm)" True
Synpcc7942_0095 CDS 3773435 chromosome 92590 93339 - "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_0127 CDS 3773467 chromosome 126390 127058 + "transcriptional regulator, Crp/Fnr family (IMGterm)" True
Synpcc7942_0426 CDS 3773371 chromosome 415535 416086 - condensin subunit ScpB (IMGterm) True
Synpcc7942_0501 CDS 3774739 chromosome 488833 489483 - Nucleoside-diphosphate-sugar epimerase-like True
Synpcc7942_0525 aroB CDS 3774763 chromosome 509226 510332 - 3-dehydroquinate synthase (EC 4.2.3.4) (IMGterm) True
Synpcc7942_0556 CDS 3774794 chromosome 538506 539219 - "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_0569 CDS 3774807 chromosome 550718 551653 - DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like True
Synpcc7942_0599 CDS 3775317 chromosome 587802 588404 - "transcriptional regulator, TetR family (IMGterm)" True
Synpcc7942_0616 hrcA CDS 3775598 chromosome 606238 607299 + heat-inducible transcription repressor HrcA (IMGterm) True
Synpcc7942_0635 nusG CDS 3775618 chromosome 626299 626916 - transcription antitermination protein nusG (IMGterm) True
Synpcc7942_0649 CDS 3775632 chromosome 642767 643966 - Sigma-70 factor True
Synpcc7942_0672 CDS 3775655 chromosome 666887 667849 + group2 RNA polymerase sigma factor SigD True
Synpcc7942_0677 CDS 3775660 chromosome 672082 672462 - "transcriptional regulator, PadR family (IMGterm)" True
Synpcc7942_0688 CDS 3775858 chromosome 683722 684060 + "transcriptional regulator, ArsR family (IMGterm)" True
Synpcc7942_0695 CDS 3775865 chromosome 688334 688840 - Protein of unknown function DUF193 True
Synpcc7942_0725 CDS 3775896 chromosome 718666 720075 + DEAD/DEAH box helicase-like True
Synpcc7942_0763 CDS 3775939 chromosome 756989 757318 - "transcriptional regulator, XRE family (IMGterm)" True
Synpcc7942_0793 CDS 3775970 chromosome 788593 789261 - hypothetical protein True
Synpcc7942_0794 CDS 3775971 chromosome 789460 790233 - membrane-associated 30 kD protein-like True
Synpcc7942_0817 CDS 3775995 chromosome 812331 812723 - "putative ferric uptake regulator, FUR family" True
Synpcc7942_0874 CDS 3774051 chromosome 874390 877449 - DEAD/DEAH box helicase-like True
Synpcc7942_0938 CDS 3775325 chromosome 944220 944540 + "transcriptional regulator, ArsR family (IMGterm)" True
Synpcc7942_0961 CDS 3775349 chromosome 968937 969950 + cell envelope-related function transcriptional attenuator common domain True
Synpcc7942_0987 CDS 3775376 chromosome 996280 996723 - "putative ferric uptake regulator, FUR family" True
Synpcc7942_1012 CDS 3773940 chromosome 1023969 1024742 - "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_1017 CDS 3773945 chromosome 1031697 1032458 - Protein of unknown function DUF28 True
Synpcc7942_1026 CDS 3773956 chromosome 1039971 1041725 - fibronectin binding protein-like True
Synpcc7942_1079 CDS 3775028 chromosome 1088698 1091151 + ATP-dependent DNA helicase RecG (EC 3.6.1.-) (IMGterm) True
Synpcc7942_1094 CDS 3775044 chromosome 1111918 1112535 - "putative transcriptional activator, TenA family (EC:3.5.99.2)" True
Synpcc7942_1110 CDS 3775060 chromosome 1126901 1127527 + response regulator receiver domain protein (CheY-like) True
Synpcc7942_1159 CDS 3775109 chromosome 1192792 1193292 - "transcriptional regulator, MarR family (IMGterm)" True
Synpcc7942_1242 CDS 3773530 chromosome 1266128 1267057 + "transcriptional regulator, LysR family (IMGterm)" True
Synpcc7942_1291 CDS 3773580 chromosome 1313561 1313929 + "transcriptional regulator, ArsR family (IMGterm)" True
Synpcc7942_1310 CDS 3775503 chromosome 1337076 1338047 + ndhF3 operon transcriptional regulator True
Synpcc7942_1326 CDS 3775519 chromosome 1357232 1360693 + transcription-repair coupling factor (IMGterm) True
Synpcc7942_1360 CDS 3775553 chromosome 1399742 1401052 + cell envelope-related transcriptional attenuator (IMGterm) True
Synpcc7942_1377 CDS 3775571 chromosome 1417540 1419879 + metal dependent phosphohydrolase (IMGterm) True
Synpcc7942_1404 CDS 3774117 chromosome 1455395 1456084 - "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_1439 CDS 3773611 chromosome 1492429 1494030 - NADH dehydrogenase subunit M (EC 1.6.5.3) (IMGterm) True
Synpcc7942_1453 CDS 3773625 chromosome 1506399 1507133 + "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_1465 CDS 3773637 chromosome 1518994 1519449 + "transcriptional regulator, BadM/Rrf2 family (IMGterm)" True
Synpcc7942_1510 CDS 3774934 chromosome 1560399 1561178 - "RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG (IMGterm)" True
Synpcc7942_1522 rpoB CDS 3774946 chromosome 1573729 1577031 + DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (IMGterm) True
Synpcc7942_1523 CDS 3774947 chromosome 1577150 1579024 + DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (IMGterm) True
Synpcc7942_1524 CDS 3774948 chromosome 1579094 1583050 + DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (IMGterm) True
Synpcc7942_1527 CDS 3774951 chromosome 1586243 1588759 + nitrogen assimilation regulatory protein True
Synpcc7942_1549 CDS 3774973 chromosome 1606129 1606689 + SOS response UmuD protein. Serine peptidase. MEROPS family S24 (IMGterm) True
Synpcc7942_1557 CDS 3774981 chromosome 1613464 1614396 - principal RNA polymerase sigma factor SigA True
Synpcc7942_1648 CDS 3775719 chromosome 1716189 1716638 - "putative ferric uptake regulator, FUR family" True
Synpcc7942_1684 CDS 3775383 chromosome 1751336 1751956 + "putative transcriptional regulator, Crp/Fnr family" True
Synpcc7942_1698 CDS 3775397 chromosome 1765087 1765428 + putative transcriptional regulator True
Synpcc7942_1725 CDS 3775425 chromosome 1797616 1799067 + "transcriptional regulator, GntR family (IMGterm)" True
Synpcc7942_1733 CDS 3775433 chromosome 1803575 1804219 - transcriptional regulator (IMGterm) True
Synpcc7942_1739 CDS 3775439 chromosome 1809717 1810142 + "transcriptional regulator, MerR family (IMGterm)" True
Synpcc7942_1746 CDS 3775446 chromosome 1816600 1817562 - group2 RNA polymerase sigma factor SigB True
Synpcc7942_1784 CDS 3774359 chromosome 1852529 1853311 + "RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG (IMGterm)" True
Synpcc7942_1803 CDS 3774378 chromosome 1873351 1873782 - "putative ferric uptake regulator, FUR family" True
Synpcc7942_1808 CDS 3774383 chromosome 1876216 1876959 - "putative transcriptional acitvator, Baf (EC:2.7.1.33)" True
Synpcc7942_1815 CDS 3774390 chromosome 1887216 1888451 - response regulator receiver domain protein (CheY-like) True
Synpcc7942_1849 CDS 3774424 chromosome 1916620 1917816 + "RNA polymerase, sigma subunit, RpsC/SigC (IMGterm)" True
Synpcc7942_1860 CDS 3775223 chromosome 1930475 1931182 - "two component transcriptional regulator, LuxR family (IMGterm)" True
Synpcc7942_1873 CDS 3775236 chromosome 1945396 1946076 + "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_1911 CDS 3775274 chromosome 1986376 1988613 - RNAse R (EC 3.1.-.-) (IMGterm) True
Synpcc7942_1923 CDS 3775286 chromosome 1999240 1999896 - "RNA polymerase, sigma subunit, ECF family (IMGterm)" True
Synpcc7942_1958 CDS 3774143 chromosome 2029762 2030133 - hypothetical protein True
Synpcc7942_1980 CDS 3774167 chromosome 2050905 2051894 + "transcriptional regulator, LysR family (IMGterm)" True
Synpcc7942_2004 CDS 3774191 chromosome 2073028 2073618 + sigma-24 (FecI-like) True
Synpcc7942_2021 CDS 3774208 chromosome 2090088 2090381 - hypothetical protein True
Synpcc7942_2022 nusA CDS 3774209 chromosome 2090378 2091703 - NusA antitermination factor (IMGterm) True
Synpcc7942_2094 CDS 3774313 chromosome 2176209 2176610 + Beta-Ig-H3/fasciclin True
Synpcc7942_2111 CDS 3774330 chromosome 2192025 2192933 + xylose repressor (EC:2.7.1.2) True
Synpcc7942_2170 CDS 3773727 chromosome 2251548 2251997 + "putative ferric uptake regulator, FUR family" True
Synpcc7942_2174 CDS 3773731 chromosome 2253875 2254504 + "putative transcriptional regulator, Crp/Fnr family" True
Synpcc7942_2209 CDS 3773767 chromosome 2286806 2287735 - DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6) (IMGterm) True
Synpcc7942_2264 CDS 3774546 chromosome 2332654 2332929 - "transcriptional regulator, LuxR family (IMGterm)" True
Synpcc7942_2305 CDS 3774588 chromosome 2373315 2374001 + "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_2356 CDS 3774639 chromosome 2422193 2422819 - "transcriptional regulator, Crp/Fnr family (IMGterm)" True
Synpcc7942_2416 CDS 3774700 chromosome 2488440 2489207 - "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_2418 CDS 3774702 chromosome 2490633 2491517 - transcriptional regulator (IMGterm) True
Synpcc7942_2425 CDS 3774709 chromosome 2497699 2498661 - chaperon-like protein for quinone binding in photosystem II True
Synpcc7942_2466 CDS 3774486 chromosome 2546850 2547557 + "two component transcriptional regulator, winged helix family (IMGterm)" True
Synpcc7942_2471 nusB CDS 3774491 chromosome 2552611 2553252 + transcription antitermination factor NusB True
Synpcc7942_2473 CDS 3774493 chromosome 2555003 2556391 + serine phosphatase (IMGterm) True
Synpcc7942_2552 CDS 3775145 chromosome 2632134 2632862 - hydrogenase accessory protein HypB True
Synpcc7942_2585 CDS 3775181 chromosome 2669713 2670228 - "transcriptional regulator, BadM/Rrf2 family (IMGterm)" True
Synpcc7942_B2618 CDS 3772766 plasmid 9947 10381 + "transcriptional regulator, BadM/Rrf2 family (IMGterm)" True
Synpcc7942_B2644 CDS 3772725 plasmid 38521 39228 + response regulator receiver domain protein (CheY-like) True
Synpcc7942_B2647 CDS 3772728 plasmid 41755 42429 - response regulator receiver domain protein (CheY-like) True
Synpcc7942_B2651 CDS 3772732 plasmid 44779 45741 - integrase/recombinase True