Desulfovibrio vulgaris Hildenborough Module 71 Residual: 0.48 | Syntrophy Portal

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Summary

Residual: 0.48 Score: -36.6653 version: dvh_cmonkey_11_Mar_02

Members

DVU0275 Polysaccharide deacetylase family protein Details for DVU0275 - Polysaccharide deacetylase family protein GO Terms: GO:0005975, GO:0016810 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0275 Tuberculist Genomic Region	DVU2937 TPR domain protein/response regulator receiver domain protein Details for DVU2937 - TPR domain protein/response regulator receiver domain protein GO Terms: GO:0000160 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2937 Tuberculist Genomic Region
DVU0453 DNA helicase Details for DVU0453 - DNA helicase GO Terms: GO:0005524, GO:0004003, GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0453 Tuberculist Genomic Region	DVU3226 Uncharacterized protein Details for DVU3226 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3226 Tuberculist Genomic Region
DVU0754 Uncharacterized protein Details for DVU0754 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0754 Tuberculist Genomic Region	DVU3227 Flagellar basal body-associated protein, putative Details for DVU3227 - Flagellar basal body-associated protein, putative GO Terms: GO:0009425, GO:0071973, GO:0006935 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3227 Tuberculist Genomic Region
DVU0938 Isoamylase N-terminal domain protein Details for DVU0938 - Isoamylase N-terminal domain protein GO Terms: GO:0005975, GO:0004553 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0938 Tuberculist Genomic Region	DVU0276 Uncharacterized protein Details for DVU0276 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0276 Tuberculist Genomic Region
DVU1180 Uncharacterized protein Details for DVU1180 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1180 Tuberculist Genomic Region	DVU0565 Glyceraldehyde-3-phosphate dehydrogenase Details for DVU0565 - Glyceraldehyde-3-phosphate dehydrogenase GO Terms: GO:0051287, GO:0050661, GO:0006006, GO:0016620 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0565 Tuberculist Genomic Region
DVU1449 Anti-sigma factor antagonist Details for DVU1449 - Anti-sigma factor antagonist GO Terms: GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1449 Tuberculist Genomic Region	DVU0566 GAF domain protein Details for DVU0566 - GAF domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0566 Tuberculist Genomic Region
DVU1450 Anti-sigma factor, putative Details for DVU1450 - Anti-sigma factor, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1450 Tuberculist Genomic Region	DVU1244 Uncharacterized protein Details for DVU1244 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1244 Tuberculist Genomic Region
DVU1471 Heat shock protein, Hsp20 family Details for DVU1471 - Heat shock protein, Hsp20 family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1471 Tuberculist Genomic Region	DVU1528 tRNA-specific adenosine deaminase Details for DVU1528 - tRNA-specific adenosine deaminase GO Terms: GO:0002100, GO:0052717, GO:0008270 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1528 Tuberculist Genomic Region
DVU2059 Glycosyl transferase, group 2 family protein Details for DVU2059 - Glycosyl transferase, group 2 family protein GO Terms: GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2059 Tuberculist Genomic Region	DVU1529 Decarboxylase family protein Details for DVU1529 - Decarboxylase family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1529 Tuberculist Genomic Region
DVU2684 Uncharacterized protein Details for DVU2684 - Uncharacterized protein GO Terms: GO:0010181, GO:0035438, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2684 Tuberculist Genomic Region	DVU1656 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Details for DVU1656 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase GO Terms: GO:0003848, GO:0009396, GO:0016301 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1656 Tuberculist Genomic Region
DVU2770 Response regulator Details for DVU2770 - Response regulator GO Terms: GO:0000160 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2770 Tuberculist Genomic Region	DVU1867 Diaminopimelate epimerase Details for DVU1867 - Diaminopimelate epimerase GO Terms: GO:0005737, GO:0008837, GO:0009089 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1867 Tuberculist Genomic Region
DVU2840 Uncharacterized protein Details for DVU2840 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2840 Tuberculist Genomic Region	DVU2060 Uncharacterized protein Details for DVU2060 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2060 Tuberculist Genomic Region
DVU2935 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Details for DVU2935 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase GO Terms: GO:0046538, GO:0006096 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2935 Tuberculist Genomic Region	DVU2427 Uncharacterized protein Details for DVU2427 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2427 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 600 Motif 2:

e-value: 13000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0110 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.11	DVU0110
DVU1967 Transcriptional regulator, rrf2 protein, putative	down-regulates	-0.11	DVU1967
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.13	DVU2114
DVU2251 DNA-binding protein	up-regulates	0.14	DVU2251
DVU2394 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.11	DVU2394
DVU2675 DNA-binding response regulator, LuxR family	up-regulates	0.17	DVU2675
DVU2960 Sigma-54 dependent transcriptional regulator	up-regulates	0.14	DVU2960

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0010467	gene expression	14	0.23	2	0.0180
BP	GO:0016070	RNA metabolic process	15	0.24	2	0.0210
BP	GO:0050789	regulation of biological process	51	0.83	3	0.0370
BP	GO:0050794	regulation of cellular process	51	0.83	3	0.0370
BP	GO:0065007	biological regulation	55	0.89	3	0.0450

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016866	intramolecular transferase activity	3	0.01	1	0.0140
MF	GO:0050662	coenzyme binding	42	0.20	2	0.0145
MF	GO:0048037	cofactor binding	56	0.26	2	0.0251

Essentiality

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