Desulfovibrio vulgaris Hildenborough Module 73 Residual: 0.36 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.36 Score: -68.947 version: dvh_cmonkey_11_Mar_02

Members

DVU1715 Uncharacterized protein Details for DVU1715 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1715 Tuberculist Genomic Region	DVU2171 Portal protein Details for DVU2171 - Portal protein GO Terms: GO:0003677, GO:0019028 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2171 Tuberculist Genomic Region
DVU1717 Uncharacterized protein Details for DVU1717 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1717 Tuberculist Genomic Region	DVU2185 Terminase, large subunit, putative Details for DVU2185 - Terminase, large subunit, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2185 Tuberculist Genomic Region
DVU1719 Conserved domain protein Details for DVU1719 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1719 Tuberculist Genomic Region	DVU2597 Uncharacterized protein Details for DVU2597 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2597 Tuberculist Genomic Region
DVU1720 Uncharacterized protein Details for DVU1720 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1720 Tuberculist Genomic Region	DVU2789 Gpr1/Fun34/YaaH family protein Details for DVU2789 - Gpr1/Fun34/YaaH family protein GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2789 Tuberculist Genomic Region
DVU1723 Uncharacterized protein Details for DVU1723 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1723 Tuberculist Genomic Region	DVU1114 Virion morphogenesis protein Details for DVU1114 - Virion morphogenesis protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1114 Tuberculist Genomic Region
DVU1725 Uncharacterized protein Details for DVU1725 - Uncharacterized protein GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1725 Tuberculist Genomic Region	DVU2166 Holin Details for DVU2166 - Holin GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2166 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 85 Motif 2:

e-value: 14000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1063 Transcriptional regulatory protein	up-regulates	0.15	DVU1063
DVU2097 Transcriptional regulator, putative	down-regulates	-0.37	DVU2097
DVU2588 DNA-binding response regulator	up-regulates	0.12	DVU2588
DVU2832 Transcriptional regulator cII, putative	up-regulates	0.21	DVU2832
DVU3142 Sigma-54 dependent transcriptional regulator	up-regulates	0.21	DVU3142
DVU3193 DNA-binding domain, excisionase family	down-regulates	-0.14	DVU3193
[field_regulator_taxonomy_regulat_1]	up-regulates	20.10	Oxygen

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003677	DNA binding	159	0.25	2	0.0150
MF	GO:0003676	nucleic acid binding	222	0.35	2	0.0300

Essentiality

Comments

Log in to post comments