Desulfovibrio vulgaris Hildenborough Module 143 Residual: 0.48

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Summary

Residual: 0.48 Score: -39.8547 version: dvh_cmonkey_11_Mar_02

Members

DVU0111 Response regulator

Details for DVU0111 - Response regulator

GO Terms: GO:0000160

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0111

Tuberculist Genomic Region

DVU3328 Uncharacterized protein

Details for DVU3328 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3328

Tuberculist Genomic Region

DVU0459 Uncharacterized protein

Details for DVU0459 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0459

Tuberculist Genomic Region

DVU0880 Uncharacterized protein

Details for DVU0880 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0880

Tuberculist Genomic Region

DVU1144 Transcriptional regulator, Cro/CI family

Details for DVU1144 - Transcriptional regulator, Cro/CI family

GO Terms: GO:0003677, GO:0045892

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1144

Tuberculist Genomic Region

DVU1285 Response regulator

Details for DVU1285 - Response regulator

GO Terms: GO:0000160

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1285

Tuberculist Genomic Region

DVU1175 Uncharacterized protein

Details for DVU1175 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1175

Tuberculist Genomic Region

DVU1664 Probable GTP-binding protein EngB

Details for DVU1664 - Probable GTP-binding protein EngB

GO Terms: GO:0005525, GO:0003924, GO:0000917, GO:0000287

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1664

Tuberculist Genomic Region

DVU1509 Uncharacterized protein

Details for DVU1509 - Uncharacterized protein

GO Terms: GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1509

Tuberculist Genomic Region

DVU1665 3-dehydroquinate dehydratase

Details for DVU1665 - 3-dehydroquinate dehydratase

GO Terms: GO:0003855, GO:0009073, GO:0009423

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1665

Tuberculist Genomic Region

DVU1758 Lipoprotein, putative

Details for DVU1758 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1758

Tuberculist Genomic Region

DVU2300 Uncharacterized protein

Details for DVU2300 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2300

Tuberculist Genomic Region

DVU1834 Pyruvate carboxylase

Details for DVU1834 - Pyruvate carboxylase

GO Terms: GO:0005524, GO:0004075, GO:0006094, GO:0046872, GO:0004736

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1834

Tuberculist Genomic Region

DVU2340 Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family

Details for DVU2340 - Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2340

Tuberculist Genomic Region

DVU1849 Protein-L-isoaspartate O-methyltransferase

Details for DVU1849 - Protein-L-isoaspartate O-methyltransferase

GO Terms: GO:0005737, GO:0030091, GO:0004719

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1849

Tuberculist Genomic Region

DVU2655 D-alanyl-D-alanine carboxypeptidase family protein

Details for DVU2655 - D-alanyl-D-alanine carboxypeptidase family protein

GO Terms: GO:0009002

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2655

Tuberculist Genomic Region

DVU2415 Uncharacterized protein

Details for DVU2415 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2415

Tuberculist Genomic Region

DVU3054 Radical SAM domain protein

Details for DVU3054 - Radical SAM domain protein

GO Terms: GO:0003824, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3054

Tuberculist Genomic Region

DVU2912 50S ribosomal protein L31

Details for DVU2912 - 50S ribosomal protein L31

GO Terms: GO:0046872, GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2912

Tuberculist Genomic Region

DVU3150 Ribosomal protein S1

Details for DVU3150 - Ribosomal protein S1

GO Terms: GO:0003723, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3150

Tuberculist Genomic Region

DVU3084 Transcriptional regulator, putative

Details for DVU3084 - Transcriptional regulator, putative

GO Terms: GO:0003677, GO:0006355, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3084

Tuberculist Genomic Region

DVU3240 Peptidase, M23/M37 family

Details for DVU3240 - Peptidase, M23/M37 family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3240

Tuberculist Genomic Region

DVU3089 Uncharacterized protein

Details for DVU3089 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3089

Tuberculist Genomic Region

Displaying 1 - 23 of 23

Motifs

Motif 1: e-value: 0.0079 e-value: 0.000047

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0118

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.13

DVU0118

DVU1572

Transcriptional regulator, CarD family
 up-regulates 0.16

DVU1572

DVU2686

Peptidase, S24 family
 up-regulates 0.18

DVU2686

DVU2802

Transcriptional regulator, GntR family
 up-regulates 0.14

DVU2802

DVUA0151

DNA-binding protein, putative
 down-regulates -0.21

DVUA0151
[field_regulator_taxonomy_regulat_1] down-regulates -0.25

Formate

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0000160 phosphorelay signal transduction system 36 0.20 2 0.0093
BP GO:0007165 signal transduction 36 0.20 2 0.0093
BP GO:0023052 signaling 36 0.20 2 0.0093
BP GO:0035556 intracellular signal transduction 36 0.20 2 0.0093
BP GO:0044700 single organism signaling 36 0.20 2 0.0093
BP GO:0007154 cell communication 39 0.21 2 0.0109
BP GO:0051716 cellular response to stimulus 44 0.24 2 0.0139
BP GO:0050789 regulation of biological process 51 0.28 2 0.0188
BP GO:0050794 regulation of cellular process 51 0.28 2 0.0188
BP GO:0065007 biological regulation 55 0.30 2 0.0219
BP GO:0050896 response to stimulus 77 0.42 2 0.0431
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0008238 exopeptidase activity 4 0.03 1 0.0309
MF GO:0008236 serine-type peptidase activity 5 0.04 1 0.0385
MF GO:0017171 serine hydrolase activity 5 0.04 1 0.0385

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