Desulfovibrio vulgaris Hildenborough Module 146 Residual: 0.50

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.50 Score: -31.6739 version: dvh_cmonkey_11_Mar_02

Members

DVU0841 Aspartate aminotransferase, putative

Details for DVU0841 - Aspartate aminotransferase, putative

GO Terms: GO:0009058, GO:0030170, GO:0008483

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0841

Tuberculist Genomic Region

DVU2940 Uncharacterized protein

Details for DVU2940 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2940

Tuberculist Genomic Region

DVU0899 UPF0296 protein DVU_0899

Details for DVU0899 - UPF0296 protein DVU_0899

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0899

Tuberculist Genomic Region

DVU3171 Cytochrome c3

Details for DVU3171 - Cytochrome c3

GO Terms: GO:0009061, GO:0009055, GO:0020037, GO:0046872, GO:0042597

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3171

Tuberculist Genomic Region

DVU0936 Uncharacterized protein

Details for DVU0936 - Uncharacterized protein

GO Terms: GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0936

Tuberculist Genomic Region

DVU3187 DNA-binding protein HU

Details for DVU3187 - DNA-binding protein HU

GO Terms: GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3187

Tuberculist Genomic Region

DVU0965 Uncharacterized protein

Details for DVU0965 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0965

Tuberculist Genomic Region

DVU3238 Response regulator

Details for DVU3238 - Response regulator

GO Terms: GO:0000160

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3238

Tuberculist Genomic Region

DVU0966 Amino acid ABC transporter, periplasmic amino acid-binding protein

Details for DVU0966 - Amino acid ABC transporter, periplasmic amino acid-binding protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0966

Tuberculist Genomic Region

DVU3277 Uncharacterized protein

Details for DVU3277 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3277

Tuberculist Genomic Region

DVU1038 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Details for DVU1038 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

GO Terms: GO:0003949, GO:0005737, GO:0000105

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1038

Tuberculist Genomic Region

DVU0041 Transglycosylase, SLT family

Details for DVU0041 - Transglycosylase, SLT family

GO Terms: GO:0008933, GO:0016020, GO:0000270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0041

Tuberculist Genomic Region

DVU1067 Membrane protein, Bmp family

Details for DVU1067 - Membrane protein, Bmp family

GO Terms: GO:0005886

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1067

Tuberculist Genomic Region

DVU0896 Lipoprotein, NLP/P60 family

Details for DVU0896 - Lipoprotein, NLP/P60 family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0896

Tuberculist Genomic Region

DVU1238 Amino acid ABC transporter, periplasmic amino acid-binding protein

Details for DVU1238 - Amino acid ABC transporter, periplasmic amino acid-binding protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1238

Tuberculist Genomic Region

DVU1064 Aconitate hydratase, putative

Details for DVU1064 - Aconitate hydratase, putative

GO Terms: GO:0016829

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1064

Tuberculist Genomic Region

DVU1392 NLP/P60 family protein

Details for DVU1392 - NLP/P60 family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1392

Tuberculist Genomic Region

DVU1406 Phosphoribosylformylglycinamidine cyclo-ligase

Details for DVU1406 - Phosphoribosylformylglycinamidine cyclo-ligase

GO Terms: GO:0006189, GO:0005524, GO:0005737, GO:0004641

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1406

Tuberculist Genomic Region

DVU1615 Phenylacetate-coenzyme A ligase

Details for DVU1615 - Phenylacetate-coenzyme A ligase

GO Terms: GO:0000166, GO:0010124, GO:0047475

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1615

Tuberculist Genomic Region

DVU1423 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase

Details for DVU1423 - 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase

GO Terms: GO:0050661, GO:0045454, GO:0050787, GO:0004148, GO:0050660, GO:0016152, GO:0045340

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1423

Tuberculist Genomic Region

DVU1910 YjeF-related protein

Details for DVU1910 - YjeF-related protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1910

Tuberculist Genomic Region

DVU1954 Probable nicotinate-nucleotide adenylyltransferase

Details for DVU1954 - Probable nicotinate-nucleotide adenylyltransferase

GO Terms: GO:0005524, GO:0009435, GO:0004515

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1954

Tuberculist Genomic Region

DVU1990 Uncharacterized protein

Details for DVU1990 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1990

Tuberculist Genomic Region

DVU2056 Uncharacterized protein

Details for DVU2056 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2056

Tuberculist Genomic Region

DVU2150 RNA polymerase-binding transcription factor DksA

Details for DVU2150 - RNA polymerase-binding transcription factor DksA

GO Terms: GO:0005737, GO:0010468, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2150

Tuberculist Genomic Region

DVU2251 DNA-binding protein

Details for DVU2251 - DNA-binding protein

GO Terms: GO:0043565

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2251

Tuberculist Genomic Region

DVU2364 Aminotransferase, classes I and II

Details for DVU2364 - Aminotransferase, classes I and II

GO Terms: GO:0009058, GO:0030170, GO:0008483

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2364

Tuberculist Genomic Region

DVU2782 Uncharacterized protein

Details for DVU2782 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2782

Tuberculist Genomic Region

DVU2783 Membrane protein, putative

Details for DVU2783 - Membrane protein, putative

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2783

Tuberculist Genomic Region

DVU2791 Cytochrome c family protein

Details for DVU2791 - Cytochrome c family protein

GO Terms: GO:0009055, GO:0020037

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2791

Tuberculist Genomic Region

Displaying 1 - 30 of 30

Motifs

Motif 1: e-value: 0.051 e-value: 81000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1744

DNA-binding protein
 down-regulates -0.11

DVU1744

DVU2423

Transcriptional regulator, putative
 down-regulates -0.25

DVU2423

DVU2557

Bifunctional ligase/repressor BirA
up-regulates 0.11

DVU2557

GO Enrichment

Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016860 intramolecular oxidoreductase activity 3 0.02 1 0.0233
MF GO:0016861 intramolecular oxidoreductase activity, ... 3 0.02 1 0.0233
MF GO:0050661 NADP binding 5 0.04 1 0.0385

Comments

Log in to post comments