Desulfovibrio vulgaris Hildenborough Module 193 Residual: 0.46 | Syntrophy Portal

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Summary

Residual: 0.46 Score: -44.1124 version: dvh_cmonkey_11_Mar_02

Members

DVU0069 Uncharacterized protein Details for DVU0069 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0069 Tuberculist Genomic Region	DVU1602 ATP-dependent Clp protease, ATP-binding subunit ClpA Details for DVU1602 - ATP-dependent Clp protease, ATP-binding subunit ClpA GO Terms: GO:0005524, GO:0004176 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1602 Tuberculist Genomic Region
DVU0488 Phosphoribosylamine--glycine ligase Details for DVU0488 - Phosphoribosylamine--glycine ligase GO Terms: GO:0006189, GO:0005524, GO:0000287, GO:0030145, GO:0004637, GO:0009113 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0488 Tuberculist Genomic Region	DVU1940 Anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative Details for DVU1940 - Anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative GO Terms: GO:0010181, GO:0050660, GO:0004368, GO:0009331, GO:0006072, GO:0005886, GO:0046174 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1940 Tuberculist Genomic Region
DVU0668 Methyl-accepting chemotaxis protein Details for DVU0668 - Methyl-accepting chemotaxis protein GO Terms: GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0668 Tuberculist Genomic Region	DVU1941 HAD-superfamily hydrolase, subfamily IIA Details for DVU1941 - HAD-superfamily hydrolase, subfamily IIA GO Terms: GO:0016787 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1941 Tuberculist Genomic Region
DVU2217 Acetyltransferase, GNAT family Details for DVU2217 - Acetyltransferase, GNAT family GO Terms: GO:0008080 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2217 Tuberculist Genomic Region	DVU1957 Uncharacterized protein Details for DVU1957 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1957 Tuberculist Genomic Region
DVU2549 Uncharacterized protein Details for DVU2549 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2549 Tuberculist Genomic Region	DVU2326 Conserved domain protein Details for DVU2326 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2326 Tuberculist Genomic Region
DVU2550 Uncharacterized protein Details for DVU2550 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2550 Tuberculist Genomic Region	DVU3162 ABC transporter, periplasmic substrate-binding protein Details for DVU3162 - ABC transporter, periplasmic substrate-binding protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3162 Tuberculist Genomic Region
DVU3082 Methyl-accepting chemotaxis protein Details for DVU3082 - Methyl-accepting chemotaxis protein GO Terms: GO:0006935, GO:0016021, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3082 Tuberculist Genomic Region	DVU3257 DNA internalization-related competence protein ComEC/Rec2 Details for DVU3257 - DNA internalization-related competence protein ComEC/Rec2 GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3257 Tuberculist Genomic Region
DVU0316 Flagellar basal body rod protein FlgB Details for DVU0316 - Flagellar basal body rod protein FlgB GO Terms: GO:0009425, GO:0071973 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0316 Tuberculist Genomic Region	DVU3387 Uncharacterized protein Details for DVU3387 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3387 Tuberculist Genomic Region
DVU0494 Aminotransferase, class V Details for DVU0494 - Aminotransferase, class V GO Terms: GO:0030170, GO:0008483 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0494 Tuberculist Genomic Region	DVUA0092 Uncharacterized protein Details for DVUA0092 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0092 Tuberculist Genomic Region
DVU0514 FlgA family protein Details for DVU0514 - FlgA family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0514 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 3700 Motif 2:

e-value: 600

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1572 Transcriptional regulator, CarD family	down-regulates	-0.16	DVU1572
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.15	DVU2114
DVU2588 DNA-binding response regulator	up-regulates	0.12	DVU2588
DVU3142 Sigma-54 dependent transcriptional regulator	up-regulates	0.13	DVU3142

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0048037	cofactor binding	56	0.22	2	0.0170
MF	GO:0008080	N-acetyltransferase activity	5	0.02	1	0.0190
MF	GO:0016410	N-acyltransferase activity	6	0.02	1	0.0230
MF	GO:0016407	acetyltransferase activity	7	0.03	1	0.0270
MF	GO:0030170	pyridoxal phosphate binding	10	0.04	1	0.0380

Essentiality

Comments

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