Desulfovibrio vulgaris Hildenborough Module 197 Residual: 0.45 | Syntrophy Portal

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Summary

Residual: 0.45 Score: -42.714 version: dvh_cmonkey_11_Mar_02

Members

DVU1724 Phage uncharacterized protein, putative Details for DVU1724 - Phage uncharacterized protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1724 Tuberculist Genomic Region	DVU2692 Conserved domain protein Details for DVU2692 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2692 Tuberculist Genomic Region
DVU2706 Uncharacterized protein Details for DVU2706 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2706 Tuberculist Genomic Region	DVU2881 Phage-plasmid primase, P4 family Details for DVU2881 - Phage-plasmid primase, P4 family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2881 Tuberculist Genomic Region
DVU3142 Sigma-54 dependent transcriptional regulator Details for DVU3142 - Sigma-54 dependent transcriptional regulator GO Terms: GO:0005524, GO:0000155, GO:0006355, GO:0043565, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3142 Tuberculist Genomic Region	DVUA0031 Uncharacterized protein Details for DVUA0031 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0031 Tuberculist Genomic Region
DVUA0012 Nitrogenase protein alpha chain Details for DVUA0012 - Nitrogenase protein alpha chain GO Terms: GO:0018697, GO:0051536, GO:0046872, GO:0016612, GO:0009399, GO:0016163 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0012 Tuberculist Genomic Region	DVUA0032 Uncharacterized protein Details for DVUA0032 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0032 Tuberculist Genomic Region
DVUA0034 Conserved domain protein Details for DVUA0034 - Conserved domain protein GO Terms: GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0034 Tuberculist Genomic Region	DVUA0035 Uncharacterized protein Details for DVUA0035 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0035 Tuberculist Genomic Region
DVUA0038 Capsular polysaccharide transport protein Details for DVUA0038 - Capsular polysaccharide transport protein GO Terms: GO:0016020, GO:0015159 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0038 Tuberculist Genomic Region	DVUA0093 Chromate transport family protein Details for DVUA0093 - Chromate transport family protein GO Terms: GO:0015109 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0093 Tuberculist Genomic Region
DVUA0042 Lipoprotein, putative Details for DVUA0042 - Lipoprotein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0042 Tuberculist Genomic Region	DVUA0102 Type III secretion inner membrane protein Details for DVUA0102 - Type III secretion inner membrane protein GO Terms: GO:0016021, GO:0006605 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0102 Tuberculist Genomic Region
DVUA0054 Glycosyl transferase, group 1 family protein Details for DVUA0054 - Glycosyl transferase, group 1 family protein GO Terms: GO:0009058, GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0054 Tuberculist Genomic Region	DVUA0128 Uncharacterized protein Details for DVUA0128 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0128 Tuberculist Genomic Region
DVU0621 Sigma-54 dependent DNA-binding response regulator Details for DVU0621 - Sigma-54 dependent DNA-binding response regulator GO Terms: GO:0005524, GO:0003677, GO:0000160, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0621 Tuberculist Genomic Region	DVUA0136 Zinc transporter ZupT Details for DVUA0136 - Zinc transporter ZupT GO Terms: GO:0016021, GO:0046873, GO:0005886, GO:0006829 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0136 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 11000 Motif 2:

e-value: 13000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1517 Transcriptional regulator cII, putative	up-regulates	0.16	DVU1517
DVU2785 Transcriptional regulator, GntR family	up-regulates	0.23	DVU2785
DVU2832 Transcriptional regulator cII, putative	up-regulates	0.43	DVU2832
DVU3255 Transcriptional regulator, CopG family	down-regulates	-0.11	DVU3255

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0015103	inorganic anion transmembrane transporte...	5	0.02	1	0.0194
MF	GO:0016730	oxidoreductase activity, acting on iron-...	5	0.02	1	0.0194
MF	GO:0016491	oxidoreductase activity	68	0.27	2	0.0250
MF	GO:0008509	anion transmembrane transporter activity	9	0.04	1	0.0347

Essentiality

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