Desulfovibrio vulgaris Hildenborough Module 218 Residual: 0.35

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Summary

Residual: 0.35 Score: -72.2714 version: dvh_cmonkey_11_Mar_02

Members

DVU0825 Protein translocase subunit SecA

Details for DVU0825 - Protein translocase subunit SecA

GO Terms: GO:0005524, GO:0005737, GO:0065002, GO:0046872, GO:0005886, GO:0017038, GO:0006605

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0825

Tuberculist Genomic Region

DVU1468 Peptidase/PDZ domain protein

Details for DVU1468 - Peptidase/PDZ domain protein

GO Terms: GO:0004252

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1468

Tuberculist Genomic Region

DVU0663 Cysteine synthase

Details for DVU0663 - Cysteine synthase

GO Terms: GO:0006535, GO:0004124, GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0663

Tuberculist Genomic Region

DVU1976 60 kDa chaperonin

Details for DVU1976 - 60 kDa chaperonin

GO Terms: GO:0005524, GO:0005737, GO:0042026

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1976

Tuberculist Genomic Region

DVU0665 Nitrogen fixation protein NifU

Details for DVU0665 - Nitrogen fixation protein NifU

GO Terms: GO:0005506, GO:0016226, GO:0051536, GO:0009399

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0665

Tuberculist Genomic Region

DVU1977 10 kDa chaperonin

Details for DVU1977 - 10 kDa chaperonin

GO Terms: GO:0005524, GO:0005737, GO:0006457

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1977

Tuberculist Genomic Region

DVU0811 Chaperone protein DnaK

Details for DVU0811 - Chaperone protein DnaK

GO Terms: GO:0005524, GO:0006457

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0811

Tuberculist Genomic Region

DVU2078 Chemotaxis response regulator protein-glutamate methylesterase of group 2 operon

Details for DVU2078 - Chemotaxis response regulator protein-glutamate methylesterase of group 2 operon

GO Terms: GO:0006935, GO:0005737, GO:0000156, GO:0008984

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2078

Tuberculist Genomic Region

DVU0812 Protein GrpE

Details for DVU0812 - Protein GrpE

GO Terms: GO:0000774, GO:0005737, GO:0006457

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0812

Tuberculist Genomic Region

DVU2079 Histidine kinase

Details for DVU2079 - Histidine kinase

GO Terms: GO:0005524, GO:0016020, GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2079

Tuberculist Genomic Region

DVU0857 Radical SAM domain protein

Details for DVU0857 - Radical SAM domain protein

GO Terms: GO:0051539, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0857

Tuberculist Genomic Region

DVU2643 Chaperone protein HtpG

Details for DVU2643 - Chaperone protein HtpG

GO Terms: GO:0005524, GO:0005737, GO:0006457, GO:0006950

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2643

Tuberculist Genomic Region

DVU0994 Uncharacterized protein

Details for DVU0994 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0994

Tuberculist Genomic Region

Displaying 1 - 13 of 13

Motifs

Motif 1: e-value: 1600 e-value: 11000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0118

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.10

DVU0118

DVU0813

Heat-inducible transcription repressor HrcA
 up-regulates 0.32

DVU0813

DVU0854

NirD protein, putative
 up-regulates 0.21

DVU0854

DVU1340

Transcriptional regulator, Fur family
 up-regulates 0.10

DVU1340

DVU2547

Transcriptional regulator, putative
 up-regulates 0.10

DVU2547

DVU3084

Transcriptional regulator, putative
 down-regulates -0.14

DVU3084

DVU3313

Transcriptional regulator, LysR family
 down-regulates -0.18

DVU3313

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0000096 sulfur amino acid metabolic process 3 0.02 1 0.0162
BP GO:0000097 sulfur amino acid biosynthetic process 3 0.02 1 0.0162
BP GO:0009069 serine family amino acid metabolic proce... 3 0.02 1 0.0162
BP GO:0006790 sulfur compound metabolic process 4 0.02 1 0.0216
BP GO:0044272 sulfur compound biosynthetic process 4 0.02 1 0.0216
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0030554 adenyl nucleotide binding 304 2.37 7 0.0024
MF GO:0017076 purine nucleotide binding 333 2.60 7 0.0043
MF GO:0000166 nucleotide binding 377 2.94 7 0.0092
MF GO:1901265 nucleoside phosphate binding 377 2.94 7 0.0092
MF GO:0036094 small molecule binding 383 2.99 7 0.0101
MF GO:0005524 ATP binding 301 2.35 6 0.0141
MF GO:0032559 adenyl ribonucleotide binding 303 2.37 6 0.0146
MF GO:0043167 ion binding 422 3.29 7 0.0180
MF GO:0035639 purine ribonucleoside triphosphate bindi... 325 2.54 6 0.0208
MF GO:0001882 nucleoside binding 327 2.55 6 0.0214
MF GO:0001883 purine nucleoside binding 327 2.55 6 0.0214
MF GO:0032549 ribonucleoside binding 327 2.55 6 0.0214
MF GO:0032550 purine ribonucleoside binding 327 2.55 6 0.0214
MF GO:0032555 purine ribonucleotide binding 332 2.59 6 0.0231
MF GO:0004252 serine-type endopeptidase activity 3 0.02 1 0.0233
MF GO:0032553 ribonucleotide binding 345 2.69 6 0.0279
MF GO:0097367 carbohydrate derivative binding 345 2.69 6 0.0279
MF GO:0008236 serine-type peptidase activity 5 0.04 1 0.0385
MF GO:0017171 serine hydrolase activity 5 0.04 1 0.0385
MF GO:0043168 anion binding 371 2.90 6 0.0395
MF GO:0005506 iron ion binding 6 0.05 1 0.0460
MF GO:0030234 enzyme regulator activity 6 0.05 1 0.0460

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