Desulfovibrio vulgaris Hildenborough Module 234 Residual: 0.41 | Syntrophy Portal

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Summary

Residual: 0.41 Score: -51.2457 version: dvh_cmonkey_11_Mar_02

Members

DVU0351 Cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein Details for DVU0351 - Cytidine 5'monophosphate N-acetylneuraminic acid synthetase, putative/polysaccharide biosynthesis protein GO Terms: GO:0030246, GO:0030259, GO:0009103, GO:0016758 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0351 Tuberculist Genomic Region	DVUA0043 Polysaccharide deacetylase family protein Details for DVUA0043 - Polysaccharide deacetylase family protein GO Terms: GO:0005975, GO:0016810 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0043 Tuberculist Genomic Region
DVU1035 Glucokinase, putative Details for DVU1035 - Glucokinase, putative GO Terms: GO:0005524, GO:0004340, GO:0006096 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1035 Tuberculist Genomic Region	DVUA0096 Major facilitator superfamily protein Details for DVUA0096 - Major facilitator superfamily protein GO Terms: GO:0016021, GO:0055085, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0096 Tuberculist Genomic Region
DVU1239 Membrane protein, putative Details for DVU1239 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1239 Tuberculist Genomic Region	DVUA0139 Outer membrane autotransporter barrel domain protein Details for DVUA0139 - Outer membrane autotransporter barrel domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0139 Tuberculist Genomic Region
DVU1508 Uncharacterized protein Details for DVU1508 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1508 Tuberculist Genomic Region	DVUA0140 Uncharacterized protein Details for DVUA0140 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0140 Tuberculist Genomic Region
DVU1858 Cold shock domain protein Details for DVU1858 - Cold shock domain protein GO Terms: GO:0003677, GO:0005737, GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1858 Tuberculist Genomic Region	DVU0070 Ser/Thr protein phosphatase family protein Details for DVU0070 - Ser/Thr protein phosphatase family protein GO Terms: GO:0016787 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0070 Tuberculist Genomic Region
DVU2283 Uncharacterized protein Details for DVU2283 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2283 Tuberculist Genomic Region	DVU2456 Uncharacterized protein Details for DVU2456 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2456 Tuberculist Genomic Region
DVU2336 Carboxyl-terminal protease Details for DVU2336 - Carboxyl-terminal protease GO Terms: GO:0008236 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2336 Tuberculist Genomic Region	DVU2517 Uncharacterized protein Details for DVU2517 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2517 Tuberculist Genomic Region
DVU2628 TPR domain protein Details for DVU2628 - TPR domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2628 Tuberculist Genomic Region	DVU2755 1,4-dihydroxy-6-naphtoate synthase Details for DVU2755 - 1,4-dihydroxy-6-naphtoate synthase GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2755 Tuberculist Genomic Region
DVU2874 Uncharacterized protein Details for DVU2874 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2874 Tuberculist Genomic Region	DVU3211 Uncharacterized protein Details for DVU3211 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3211 Tuberculist Genomic Region
DVU3110 L-aspartate oxidase, putative Details for DVU3110 - L-aspartate oxidase, putative GO Terms: GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3110 Tuberculist Genomic Region	DVUA0055 Membrane protein, putative Details for DVUA0055 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0055 Tuberculist Genomic Region
DVU3325 Uncharacterized protein Details for DVU3325 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3325 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.48 Motif 2:

e-value: 31

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0946 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.12	DVU0946
DVU1063 Transcriptional regulatory protein	up-regulates	0.11	DVU1063
DVU1561 Molybdenum-binding protein, HTH domain	up-regulates	0.13	DVU1561
DVU2557 Bifunctional ligase/repressor BirA	up-regulates	0.16	DVU2557
DVU2799 Transcriptional regulator, MarR family	down-regulates	-0.11	DVU2799
DVU2953 Transcriptional regulator, GntR family	up-regulates	0.12	DVU2953
DVU3220 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.18	DVU3220
[field_regulator_taxonomy_regulat_1]	up-regulates	0.12	Formate
[field_regulator_taxonomy_regulat_1]	down-regulates	-0.16	Megaplasmid minus
[field_regulator_taxonomy_regulat_1]	down-regulates	-0.13	Thiosulfate

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0030246	carbohydrate binding	4	0.02	1	0.0190
MF	GO:0008236	serine-type peptidase activity	5	0.02	1	0.0230
MF	GO:0017171	serine hydrolase activity	5	0.02	1	0.0230

Essentiality

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