Desulfovibrio vulgaris Hildenborough Module 237 Residual: 0.36 | Syntrophy Portal

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Summary

Residual: 0.36 Score: -67.2638 version: dvh_cmonkey_11_Mar_02

Members

DVU0388 Amino acid ABC transporter, ATP-binding protein Details for DVU0388 - Amino acid ABC transporter, ATP-binding protein GO Terms: GO:0005524, GO:0016887 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0388 Tuberculist Genomic Region	DVU3069 Uncharacterized protein Details for DVU3069 - Uncharacterized protein GO Terms: GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3069 Tuberculist Genomic Region
DVU1076 Putative membrane protein insertion efficiency factor Details for DVU1076 - Putative membrane protein insertion efficiency factor GO Terms: GO:0005886 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1076 Tuberculist Genomic Region	DVU1075 Ribonuclease P protein component Details for DVU1075 - Ribonuclease P protein component GO Terms: GO:0004526, GO:0000049, GO:0008033 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1075 Tuberculist Genomic Region
DVU1587 Acetyltransferase, GNAT family Details for DVU1587 - Acetyltransferase, GNAT family GO Terms: GO:0008080 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1587 Tuberculist Genomic Region	DVU1077 Membrane protein insertase YidC Details for DVU1077 - Membrane protein insertase YidC GO Terms: GO:0016021, GO:0005886, GO:0051205, GO:0015031 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1077 Tuberculist Genomic Region
DVU1818 Protein-export membrane protein SecF Details for DVU1818 - Protein-export membrane protein SecF GO Terms: GO:0015450, GO:0016021, GO:0005622, GO:0065002, GO:0005886, GO:0006605, GO:0043952 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1818 Tuberculist Genomic Region	DVU1626 Uncharacterized protein Details for DVU1626 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1626 Tuberculist Genomic Region
DVU1819 Protein translocase subunit SecD Details for DVU1819 - Protein translocase subunit SecD GO Terms: GO:0015450, GO:0016021, GO:0005622, GO:0065002, GO:0005886, GO:0006605, GO:0043952 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1819 Tuberculist Genomic Region	DVU1929 Uncharacterized protein Details for DVU1929 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1929 Tuberculist Genomic Region
DVU1840 tRNA N6-adenosine threonylcarbamoyltransferase Details for DVU1840 - tRNA N6-adenosine threonylcarbamoyltransferase GO Terms: GO:0005737, GO:0005506, GO:0004222, GO:0070526, GO:0016747 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1840 Tuberculist Genomic Region	DVU2922 Protein translocase subunit SecE Details for DVU2922 - Protein translocase subunit SecE GO Terms: GO:0015450, GO:0016021, GO:0005622, GO:0065002, GO:0005886, GO:0009306, GO:0006605, GO:0043952 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2922 Tuberculist Genomic Region
DVU2374 Lipoprotein-releasing system ATP-binding protein LolD Details for DVU2374 - Lipoprotein-releasing system ATP-binding protein LolD GO Terms: GO:0005524, GO:0043190, GO:0016887, GO:0042954 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2374 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 590 Motif 2:

e-value: 11000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0118 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.12	DVU0118
DVU1156 Sigma-54 dependent transcriptional regulator, putative/response regulator	down-regulates	-0.14	DVU1156
DVU1561 Molybdenum-binding protein, HTH domain	down-regulates	-0.19	DVU1561
DVU2275 Sigma-54 dependent transcriptional regulator	up-regulates	0.10	DVU2275
DVU2547 Transcriptional regulator, putative	down-regulates	-0.16	DVU2547
DVU3142 Sigma-54 dependent transcriptional regulator	down-regulates	-0.20	DVU3142
DVU3255 Transcriptional regulator, CopG family	up-regulates	0.18	DVU3255

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0022891	substrate-specific transmembrane transpo...	18	0.11	3	0.0001
MF	GO:0022892	substrate-specific transporter activity	19	0.12	3	0.0002
MF	GO:0022857	transmembrane transporter activity	25	0.16	3	0.0004
MF	GO:0005215	transporter activity	33	0.21	3	0.0008
MF	GO:0004519	endonuclease activity	5	0.03	1	0.0309
MF	GO:0008080	N-acetyltransferase activity	5	0.03	1	0.0309
MF	GO:0016410	N-acyltransferase activity	6	0.04	1	0.0370
MF	GO:0016407	acetyltransferase activity	7	0.04	1	0.0430

Essentiality

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