Desulfovibrio vulgaris Hildenborough Module 280 Residual: 0.46 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.46 Score: -44.2058 version: dvh_cmonkey_11_Mar_02

Members

DVU0172 Iron-sulfur cluster-binding protein Details for DVU0172 - Iron-sulfur cluster-binding protein GO Terms: GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0172 Tuberculist Genomic Region	DVU2807 Biopolymer transport protein, ExbD/TolR family Details for DVU2807 - Biopolymer transport protein, ExbD/TolR family GO Terms: GO:0016021, GO:0015031, GO:0005215 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2807 Tuberculist Genomic Region
DVU0173 Thiosulfate reductase, putative Details for DVU0173 - Thiosulfate reductase, putative GO Terms: GO:0051539, GO:0030151, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0173 Tuberculist Genomic Region	DVU3290 Conserved domain protein Details for DVU3290 - Conserved domain protein GO Terms: GO:0008152 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3290 Tuberculist Genomic Region
DVU0186 Uncharacterized protein Details for DVU0186 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0186 Tuberculist Genomic Region	DVU3291 Glutamate synthase, iron-sulfur cluster-binding subunit, putative Details for DVU3291 - Glutamate synthase, iron-sulfur cluster-binding subunit, putative GO Terms: GO:0006537, GO:0015930, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3291 Tuberculist Genomic Region
DVU1169 Methyl-accepting chemotaxis protein Details for DVU1169 - Methyl-accepting chemotaxis protein GO Terms: GO:0006935, GO:0016021, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1169 Tuberculist Genomic Region	DVU3312 Uncharacterized protein Details for DVU3312 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3312 Tuberculist Genomic Region
DVU2110 L-lactate permease Details for DVU2110 - L-lactate permease GO Terms: GO:0005887, GO:0015129 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2110 Tuberculist Genomic Region	DVU0250 Uncharacterized protein Details for DVU0250 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0250 Tuberculist Genomic Region
DVU2560 Conserved domain protein Details for DVU2560 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2560 Tuberculist Genomic Region	DVU0251 Membrane protein, putative Details for DVU0251 - Membrane protein, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0251 Tuberculist Genomic Region
DVU2562 Acyl carrier protein, putative Details for DVU2562 - Acyl carrier protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2562 Tuberculist Genomic Region	DVU0308 Membrane protein, putative Details for DVU0308 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0308 Tuberculist Genomic Region
DVU2563 Beta-ketoacyl synthase, putative Details for DVU2563 - Beta-ketoacyl synthase, putative GO Terms: GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2563 Tuberculist Genomic Region	DVU0309 Transcriptional regulator, LysR family Details for DVU0309 - Transcriptional regulator, LysR family GO Terms: GO:0003677, GO:0003700, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0309 Tuberculist Genomic Region
DVU2802 Transcriptional regulator, GntR family Details for DVU2802 - Transcriptional regulator, GntR family GO Terms: GO:0003677, GO:0003700, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2802 Tuberculist Genomic Region	DVU2510 Penicillin-binding protein Details for DVU2510 - Penicillin-binding protein GO Terms: GO:0008658 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2510 Tuberculist Genomic Region
DVU2803 Membrane protein, putative Details for DVU2803 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2803 Tuberculist Genomic Region	DVU2804 Metallo-beta-lactamase family protein Details for DVU2804 - Metallo-beta-lactamase family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2804 Tuberculist Genomic Region
DVU2805 Cobalamin synthesis protein/P47K family Details for DVU2805 - Cobalamin synthesis protein/P47K family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2805 Tuberculist Genomic Region	DVU3292 Pyridine nucleotide-disulfide oxidoreductase Details for DVU3292 - Pyridine nucleotide-disulfide oxidoreductase GO Terms: GO:0050660, GO:0051536, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3292 Tuberculist Genomic Region
DVU2806 MotA/TolQ/ExbB proton channel family protein Details for DVU2806 - MotA/TolQ/ExbB proton channel family protein GO Terms: GO:0016021, GO:0008565 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2806 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 23 Motif 2:

e-value: 110

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
[field_regulator_taxonomy_regulat_1]

GO Enrichment

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0016021	integral component of membrane	184	1.87	4	0.0470
CC	GO:0031224	intrinsic component of membrane	184	1.87	4	0.0470

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006537	glutamate biosynthetic process	3	0.02	1	0.0240
BP	GO:0006536	glutamate metabolic process	4	0.03	1	0.0320
BP	GO:0043648	dicarboxylic acid metabolic process	4	0.03	1	0.0320
BP	GO:0009084	glutamine family amino acid biosynthetic...	6	0.05	1	0.0480
BP	GO:0043650	dicarboxylic acid biosynthetic process	3	0.02	1	0.0240

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0031406	carboxylic acid binding	6	0.03	1	0.0320
MF	GO:0043177	organic acid binding	6	0.03	1	0.0320

Essentiality

Comments

Log in to post comments